hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-13375153/chunk_1/iprscan-20080306-13375153.nocrc
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Query sequence: pF1KSDA1318
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF03732.7.fs   Retrotransposon gag protein               24.9    9.1e-07   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF03732.7.fs     1/1    1243  1280 ..    57   100 .]    24.9  9.1e-07

Alignments of top-scoring domains:
PF03732.7.fs: domain 1 of 1, from 1243 to 1280: score 24.9, E = 9.1e-07
                   *->rQkgtesvrEYverFkrlarqlphhggvrteealisaFlrGLre<-*
                      +Q g +svr+Y + F  lar l      ++++ l ++Fl+GL e   
  pF1KSDA131  1243    KQ-GQKSVRQYATDFLLLARHLS-----WSDAILRTRFLEGLSE    1280 

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