hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-10470839/chunk_1/iprscan-20080306-10470839.nocrc
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Query sequence: pF1KSDA1205
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02178.9.ls AT hook motif                                   14.7      0.062   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02178.9.ls   1/2     347   359 ..     1    13 []     5.5      2.4
PF02178.9.ls   2/2     381   393 ..     1    13 []     9.2     0.55

Alignments of top-scoring domains:
PF02178.9.ls: domain 1 of 2, from 347 to 359: score 5.5, E = 2.4
                   *->kRkRGRPrKaata<-*
                      +R+RGRPr  + +   
  pF1KSDA120   347    PRPRGRPRIRPLE    359  

PF02178.9.ls: domain 2 of 2, from 381 to 393: score 9.2, E = 0.55
                   *->kRkRGRPrKaata<-*
                      +R+RGR rKa +a   
  pF1KSDA120   381    GRGRGRGRKAEEA    393  

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