PACSIN1 ORF clone pF1KSDA1379

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Flexi ORF Clone pF1KSDA1379

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Clone info.

Species

human

Clone Name

pF1KSDA1379 Sequence (with vector) Restriction Map

Product ID

FXC01628

HaloTag Clone PID

FHC01628

ORF Sequence

DNA sequence (1332 bp)
Protein sequence (444 aa)

Linker Type

Flexi_RBS type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384190]

Gene

KIAA1379

Symbol

PACSIN1

Alias : SDPI

Description

protein kinase C and casein kinase substrate in neurons 1, transcript variant 1

Original Clone ID

fj05092s1

Features of the cloned ORF sequence

Description

Length: 1332 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 444 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS4793.1 4.4e-98 100.0 PACSIN1 CCDS54536.1 8.4e-69 68.4 PACSIN2 CCDS43023.1 7.5e-53 63.1 PACSIN2 CCDS31481.1 3.7e-40 51.7 PACSIN3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR001452 388 398 PR00452 Src homology-3 domain IPR001452 402 417 PR00452 Src homology-3 domain IPR001452 432 444 PR00452 Src homology-3 domain HMMPfam IPR001060 17 105 PF00611 Fps/Fes/Fer/CIP4 homology IPR001452 391 438 PF00018 Src homology-3 domain HMMSmart IPR001060 17 105 SM00055 Fps/Fes/Fer/CIP4 homology IPR001452 388 444 SM00326 Src homology-3 domain ProfileScan IPR001060 13 76 PS50133 Fps/Fes/Fer/CIP4 homology IPR001452 385 444 PS50002 Src homology-3 domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_065855 444 606512 100.0 100.0 NP_001186512 444 606512 100.0 100.0 XP_011512843 444 606512 100.0 100.0 NP_001171900 445 604960 68.4 100.0 XP_005261376 445 604960 68.4 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KSDA1379 Download

>KIAA1379  1332 bp
ATGTCCAGCTCCTACGATGAGGCCTCACTGGCGCCAGAGGAGACCACCGACAGCTTCTGG
GAGGTGGGGAACTACAAGCGGACCGTGAAGCGCATCGATGACGGCCACCGTCTATGCAAC
GACCTGATGAACTGCGTGCAGGAGCGCGCCAAGATCGAGAAGGCGTACGGGCAGCAGCTC
ACCGACTGGGCCAAGCGTTGGCGCCAGCTCATCGAGAAAGGCCCACAGTATGGCAGCCTG
GAGCGGGCCTGGGGTGCCATAATGACAGAGGCAGACAAGGTGAGCGAGCTGCACCAGGAG
GTGAAGAACAATCTGCTGAATGAGGACCTGGAGAAGGTGAAGAACTGGCAGAAGGACGCC
TATCACAAGCAGATCATGGGTGGCTTCAAGGAGACGAAGGAGGCTGAAGATGGCTTCCGC
AAGGCCCAGAAGCCTTGGGCCAAGAAGATGAAGGAGCTGGAGGCAGCCAAGAAGGCCTAC
CATTTGGCTTGCAAAGAGGAAAAGCTGGCCATGACACGGGAGATGAACAGCAAGACGGAG
CAATCGGTCACACCTGAGCAGCAAAAGAAGCTGCAGGACAAAGTGGACAAGTGCAAGCAG
GATGTGCAGAAGACACAGGAGAAGTATGAGAAAGTGCTGGAAGATGTGGGCAAGACCACA
CCCCAGTACATGGAGAACATGGAGCAGGTGTTTGAGCAATGCCAGCAATTTGAGGAAAAG
CGGCTGGTCTTCCTCAAGGAGGTGCTGCTGGACATCAAACGGCACCTCAACCTGGCTGAG
AACAGCAGCTACATCCATGTGTACCGTGAGCTGGAGCAGGCCATCCGGGGGGCTGATGCC
CAGGAAGACCTCAGATGGTTCCGCAGCACCAGTGGCCCCGGCATGCCCATGAACTGGCCC
CAGTTTGAGGAGTGGAACCCAGACCTTCCTCACACCACCACCAAGAAGGAGAAACAGCCT
AAGAAGGCAGAGGGAGTGGCGCTGACCAATGCCACTGGGGCGGTAGAGTCCACATCCCAG
GCTGGGGACCGCGGCAGTGTTAGCAGCTACGACAGAGGCCAGCCCTACGCCACCGAGTGG
TCAGACGACGAGAGTGGGAACCCCTTTGGGGGCAGTGAGACCAACGGGGGCGCCAACCCC
TTTGAGGACGACTCCAAGGGAGTGCGCGTGCGGGCACTCTACGACTATGACGGCCAGGAG
CAGGACGAGCTCAGCTTTAAGGCCGGAGACGAACTCACCAAGCTGGGCGAGGAGGATGAG
CAGGGCTGGTGCCGTGGGCGGCTGGACAGCGGGCAGCTGGGCCTCTACCCTGCCAACTAC
GTGGAGGCTATC

ORF Protein

Cloned ORF protein sequence for pF1KSDA1379 Download

>KIAA1379  444 aa
MSSSYDEASLAPEETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQL
TDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDA
YHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTE
QSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEK
RLVFLKEVLLDIKRHLNLAENSSYIHVYRELEQAIRGADAQEDLRWFRSTSGPGMPMNWP
QFEEWNPDLPHTTTKKEKQPKKAEGVALTNATGAVESTSQAGDRGSVSSYDRGQPYATEW
SDDESGNPFGGSETNGGANPFEDDSKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDE
QGWCRGRLDSGQLGLYPANYVEAI

ORF+Vector

Nucleotide Sequence (with vector) for pF1KSDA1379 Download

>pF1KSDA1379  4469 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT
AGAACCATGTCCAGCTCCTACGATGAGGCCTCACTGGCGCCAGAGGAGACCACCGACAGC
TTCTGGGAGGTGGGGAACTACAAGCGGACCGTGAAGCGCATCGATGACGGCCACCGTCTA
TGCAACGACCTGATGAACTGCGTGCAGGAGCGCGCCAAGATCGAGAAGGCGTACGGGCAG
CAGCTCACCGACTGGGCCAAGCGTTGGCGCCAGCTCATCGAGAAAGGCCCACAGTATGGC
AGCCTGGAGCGGGCCTGGGGTGCCATAATGACAGAGGCAGACAAGGTGAGCGAGCTGCAC
CAGGAGGTGAAGAACAATCTGCTGAATGAGGACCTGGAGAAGGTGAAGAACTGGCAGAAG
GACGCCTATCACAAGCAGATCATGGGTGGCTTCAAGGAGACGAAGGAGGCTGAAGATGGC
TTCCGCAAGGCCCAGAAGCCTTGGGCCAAGAAGATGAAGGAGCTGGAGGCAGCCAAGAAG
GCCTACCATTTGGCTTGCAAAGAGGAAAAGCTGGCCATGACACGGGAGATGAACAGCAAG
ACGGAGCAATCGGTCACACCTGAGCAGCAAAAGAAGCTGCAGGACAAAGTGGACAAGTGC
AAGCAGGATGTGCAGAAGACACAGGAGAAGTATGAGAAAGTGCTGGAAGATGTGGGCAAG
ACCACACCCCAGTACATGGAGAACATGGAGCAGGTGTTTGAGCAATGCCAGCAATTTGAG
GAAAAGCGGCTGGTCTTCCTCAAGGAGGTGCTGCTGGACATCAAACGGCACCTCAACCTG
GCTGAGAACAGCAGCTACATCCATGTGTACCGTGAGCTGGAGCAGGCCATCCGGGGGGCT
GATGCCCAGGAAGACCTCAGATGGTTCCGCAGCACCAGTGGCCCCGGCATGCCCATGAAC
TGGCCCCAGTTTGAGGAGTGGAACCCAGACCTTCCTCACACCACCACCAAGAAGGAGAAA
CAGCCTAAGAAGGCAGAGGGAGTGGCGCTGACCAATGCCACTGGGGCGGTAGAGTCCACA
TCCCAGGCTGGGGACCGCGGCAGTGTTAGCAGCTACGACAGAGGCCAGCCCTACGCCACC
GAGTGGTCAGACGACGAGAGTGGGAACCCCTTTGGGGGCAGTGAGACCAACGGGGGCGCC
AACCCCTTTGAGGACGACTCCAAGGGAGTGCGCGTGCGGGCACTCTACGACTATGACGGC
CAGGAGCAGGACGAGCTCAGCTTTAAGGCCGGAGACGAACTCACCAAGCTGGGCGAGGAG
GATGAGCAGGGCTGGTGCCGTGGGCGGCTGGACAGCGGGCAGCTGGGCCTCTACCCTGCC
AACTACGTGGAGGCTATCTACGTAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCT
CTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGC
TGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACG
GGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAA
AACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGC
GCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCG
TTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTG
CTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGG
AAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGA
TCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTG
CACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAG
ACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTT
TTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTA
TCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCG
GGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTT
GCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGAT
CCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGG
ATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCA
GCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACT
CATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATC
GACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGAT
ATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCC
GCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGA
CTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGC
GGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGG
CCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCG
CCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGG
ACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGAC
CCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCA
TAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGT
GCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTC
CAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAG
AGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACAC
TAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGT
TGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAA
GCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGG
GTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAA
AAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCC
CTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAAT
GTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATT
GCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTG
AACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCC
TCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCG
AGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAA
TTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAA
ACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGC
ATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGT
CGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGC
AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGC
AGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTC
TAAATACATTCAAATATGTATCCGCTCAT