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SpecieshumanProduct IDFXC00531Cloning SiteSgfI-PmeISymbolLRRTM2Descriptionleucine rich repeat transmembrane neuronal 2
Length: 1548 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 516 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS47272.1 5.6e-199 100.0 LRRTM2 CCDS1966.1 1.5e-91 47.6 LRRTM1 CCDS7270.1 2.9e-82 44.6 LRRTM3 CCDS46347.1 3.9e-80 43.5 LRRTM4 CCDS46346.1 7.3e-80 43.3 LRRTM4
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan NULL 135 148 PR00019 NULL NULL 180 193 PR00019 NULL HMMPfam IPR001611 110 132 PF00560 Leucine-rich repeat IPR001611 134 156 PF00560 Leucine-rich repeat IPR001611 158 179 PF00560 Leucine-rich repeat IPR001611 182 204 PF00560 Leucine-rich repeat IPR001611 206 225 PF00560 Leucine-rich repeat HMMSmart IPR003591 84 107 SM00369 Leucine-rich repeat IPR003591 108 131 SM00369 Leucine-rich repeat IPR003591 132 155 SM00369 Leucine-rich repeat IPR003591 156 179 SM00369 Leucine-rich repeat IPR003591 180 203 SM00369 Leucine-rich repeat IPR003591 204 224 SM00369 Leucine-rich repeat IPR003591 228 251 SM00369 Leucine-rich repeat IPR003591 252 275 SM00369 Leucine-rich repeat IPR003591 276 299 SM00369 Leucine-rich repeat ProfileScan IPR001611 63 83 PS51450 Leucine-rich repeat IPR001611 86 107 PS51450 Leucine-rich repeat IPR001611 110 131 PS51450 Leucine-rich repeat IPR001611 134 155 PS51450 Leucine-rich repeat IPR001611 158 179 PS51450 Leucine-rich repeat IPR001611 182 203 PS51450 Leucine-rich repeat IPR001611 206 227 PS51450 Leucine-rich repeat IPR001611 230 251 PS51450 Leucine-rich repeat IPR001611 254 275 PS51450 Leucine-rich repeat IPR001611 278 299 PS51450 Leucine-rich repeat
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 12 PMLAAIYAMSMVLKMLPALGMAC 34 SECONDARY 23 2 423 VITGTMALLFSFFFIIFIVFIS 444 PRIMARY 22
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_056379 516 610868 100.0 100.0 XP_016859475 522 610867 47.6 100.0 NP_849161 522 610867 47.6 100.0 XP_016859476 522 610867 47.6 100.0 NP_821079 581 610869 44.6 100.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KSDA0416 Download>KIAA0416 1548 bp ATGGGCTTACATTTCAAGTGGCCATTAGGGGCCCCTATGCTGGCAGCAATATATGCAATG AGTATGGTTTTAAAAATGCTGCCTGCCCTGGGTATGGCGTGTCCACCCAAATGCCGCTGC GAGAAGCTGCTCTTCTACTGCGACTCTCAGGGCTTCCACTCAGTGCCAAACGCCACAGAC AAGGGCTCTCTGGGCCTGTCCCTGAGGCACAATCACATCACAGAGCTCGAAAGAGATCAA TTTGCCAGCTTCAGTCAACTTACTTGGCTCCACTTAGATCACAATCAAATTTCAACAGTA AAAGAAGATGCTTTTCAAGGACTATATAAACTTAAGGAATTAATCTTAAGTTCCAACAAA ATATTTTACTTGCCAAACACAACTTTTACCCAACTGATTAACCTGCAAAATTTGGACCTG TCTTTTAATCAGCTGTCATCTCTGCACCCAGAGCTCTTCTATGGCCTTCGGAAGCTGCAG ACCTTGCATTTACGTTCCAACTCCCTGCGGACTATCCCAGTACGCCTGTTCTGGGACTGT CGTAGTCTGGAGTTTCTGGATTTGAGCACAAATCGTTTGCGAAGTTTGGCTCGCAATGGA TTTGCAGGATTAATTAAACTGAGAGAGCTTCACCTAGAGCACAACCAGCTGACGAAGATT AATTTTGCTCATTTCCTACGGCTAAGCAGTCTGCACACGCTCTTCTTACAATGGAACAAA ATCAGCAACTTGACATGTGGGATGGAGTGGACCTGGGGCACTTTAGAAAAGCTAGACCTG ACTGGAAATGAAATCAAAGCCATCGACTTGACAGTGTTTGAAACGATGCCCAATCTTAAA ATACTACTCATGGATAACAACAAGTTAAACAGCCTTGATTCCAAGATCTTAAACTCCCTG AGATCCCTCACAACCGTTGGTCTCTCTGGCAATCTGTGGGAATGCAGCGCCCGAATATGT GCTCTGGCCTCCTGGCTGGGCAGTTTCCAAGGTCGGTGGGAACACTCCATCCTATGCCAC AGTCCTGACCACACCCAAGGAGAGGATATTCTAGATGCAGTCCATGGATTTCAGCTCTGC TGGAATTTGTCAACCACTGTCACTGTCATGGCTACAACTTATAGAGATCCAACCACTGAA TATACAAAAAGAATAAGCTCATCAAGTTACCATGTGGGAGACAAAGAAATCCCAACTACT GCAGGCATAGCAGTTACTACCGAGGAACACTTTCCTGAACCAGACAATGCCATCTTCACT CAGCGGGTAATTACGGGAACAATGGCTTTATTGTTTTCTTTCTTTTTTATTATTTTTATA GTGTTCATCTCCAGGAAGTGCTGCCCTCCCACTTTAAGAAGAATTAGGCAGTGCTCAATG GTTCAGAACCACAGGCAGCTCCGATCCCAAACACGACTCCATATGTCAAACATGTCAGAC CAAGGACCGTATAATGAATATGAACCCACCCATGAAGGACCCTTCATCATCATTAATGGT TATGGACAGTGCAAGTGTCAGCAGCTGCCATACAAAGAATGTGAAGTA
Cloned ORF protein sequence for pF1KSDA0416 Download>KIAA0416 516 aa MGLHFKWPLGAPMLAAIYAMSMVLKMLPALGMACPPKCRCEKLLFYCDSQGFHSVPNATD KGSLGLSLRHNHITELERDQFASFSQLTWLHLDHNQISTVKEDAFQGLYKLKELILSSNK IFYLPNTTFTQLINLQNLDLSFNQLSSLHPELFYGLRKLQTLHLRSNSLRTIPVRLFWDC RSLEFLDLSTNRLRSLARNGFAGLIKLRELHLEHNQLTKINFAHFLRLSSLHTLFLQWNK ISNLTCGMEWTWGTLEKLDLTGNEIKAIDLTVFETMPNLKILLMDNNKLNSLDSKILNSL RSLTTVGLSGNLWECSARICALASWLGSFQGRWEHSILCHSPDHTQGEDILDAVHGFQLC WNLSTTVTVMATTYRDPTTEYTKRISSSSYHVGDKEIPTTAGIAVTTEEHFPEPDNAIFT QRVITGTMALLFSFFFIIFIVFISRKCCPPTLRRIRQCSMVQNHRQLRSQTRLHMSNMSD QGPYNEYEPTHEGPFIIINGYGQCKCQQLPYKECEV
Nucleotide Sequence (with vector) for pF1KSDA0416 Download>pF1KSDA0416 4687 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT AGAACCATGGGCTTACATTTCAAGTGGCCATTAGGGGCCCCTATGCTGGCAGCAATATAT GCAATGAGTATGGTTTTAAAAATGCTGCCTGCCCTGGGTATGGCGTGTCCACCCAAATGC CGCTGCGAGAAGCTGCTCTTCTACTGCGACTCTCAGGGCTTCCACTCAGTGCCAAACGCC ACAGACAAGGGCTCTCTGGGCCTGTCCCTGAGGCACAATCACATCACAGAGCTCGAAAGA GATCAATTTGCCAGCTTCAGTCAACTTACTTGGCTCCACTTAGATCACAATCAAATTTCA ACAGTAAAAGAAGATGCTTTTCAAGGACTATATAAACTTAAGGAATTAATCTTAAGTTCC AACAAAATATTTTACTTGCCAAACACAACTTTTACCCAACTGATTAACCTGCAAAATTTG GACCTGTCTTTTAATCAGCTGTCATCTCTGCACCCAGAGCTCTTCTATGGCCTTCGGAAG CTGCAGACCTTGCATTTACGTTCCAACTCCCTGCGGACTATCCCAGTACGCCTGTTCTGG GACTGTCGTAGTCTGGAGTTTCTGGATTTGAGCACAAATCGTTTGCGAAGTTTGGCTCGC AATGGATTTGCAGGATTAATTAAACTGAGAGAGCTTCACCTAGAGCACAACCAGCTGACG AAGATTAATTTTGCTCATTTCCTACGGCTAAGCAGTCTGCACACGCTCTTCTTACAATGG AACAAAATCAGCAACTTGACATGTGGGATGGAGTGGACCTGGGGCACTTTAGAAAAGCTA GACCTGACTGGAAATGAAATCAAAGCCATCGACTTGACAGTGTTTGAAACGATGCCCAAT CTTAAAATACTACTCATGGATAACAACAAGTTAAACAGCCTTGATTCCAAGATCTTAAAC TCCCTGAGATCCCTCACAACCGTTGGTCTCTCTGGCAATCTGTGGGAATGCAGCGCCCGA ATATGTGCTCTGGCCTCCTGGCTGGGCAGTTTCCAAGGTCGGTGGGAACACTCCATCCTA TGCCACAGTCCTGACCACACCCAAGGAGAGGATATTCTAGATGCAGTCCATGGATTTCAG CTCTGCTGGAATTTGTCAACCACTGTCACTGTCATGGCTACAACTTATAGAGATCCAACC ACTGAATATACAAAAAGAATAAGCTCATCAAGTTACCATGTGGGAGACAAAGAAATCCCA ACTACTGCAGGCATAGCAGTTACTACCGAGGAACACTTTCCTGAACCAGACAATGCCATC TTCACTCAGCGGGTAATTACGGGAACAATGGCTTTATTGTTTTCTTTCTTTTTTATTATT TTTATAGTGTTCATCTCCAGGAAGTGCTGCCCTCCCACTTTAAGAAGAATTAGGCAGTGC TCAATGGTTCAGAACCACAGGCAGCTCCGATCCCAAACACGACTCCATATGTCAAACATG TCAGACCAAGGACCGTATAATGAATATGAACCCACCCATGAAGGACCCTTCATCATCATT AATGGTTATGGACAGTGCAAGTGTCAGCAGCTGCCATACAAAGAATGTGAAGTATACGTA GTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCA AGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGA GCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAA AGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCA TGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGAT AGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGT GTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAA GAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATG GCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGA TGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGG GTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCC GTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGT GCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTT CCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGC GAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATC ATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCAC CAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAG GATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAG GCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAAT ATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCG GACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAA TGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCC TTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGCGAAATGACCGA CCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAA TCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGT AAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAA AATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTT CCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTG TCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTC AGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCC GACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTA TCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCT ACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATC TGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAA CAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAA AAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAA AACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTT TTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCA TGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGC ATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTT GTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTAC AATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCG CAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAG ATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCG GTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGT GTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCA GTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAG GACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC AGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG CCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATC CGCTCAT
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