PABPC5 ORF clone pF1KB8819

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KOP Flexi HaloTag ORF List search

Flexi ORF Clone pF1KB8819

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Clone info.

Species

human

Clone Name

pF1KB8819 Sequence (with vector) Restriction Map

Product ID

FXC03043

HaloTag Clone PID

FHC03043

ORF Sequence

DNA sequence (1146 bp)
Protein sequence (382 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464655]

Gene

KIBB8819

Symbol

PABPC5

Alias : PABP5

Description

poly(A) binding protein, cytoplasmic 5

Original Clone ID

cp00854

Features of the cloned ORF sequence

Description

Length: 1146 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 382 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS14460.1 5e-119 100.0 PABPC5 CCDS44114.1 3.3e-73 66.6 PABPC4 CCDS438.1 3.3e-73 66.6 PABPC4 CCDS44115.1 3.4e-73 66.6 PABPC4 CCDS6289.1 2.2e-72 64.3 PABPC1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000504 20 88 PF00076 RNA recognition motif domain IPR000504 108 175 PF00076 RNA recognition motif domain IPR000504 201 269 PF00076 RNA recognition motif domain IPR000504 304 372 PF00076 RNA recognition motif domain HMMSmart IPR000504 19 92 SM00360 RNA recognition motif domain IPR003954 107 178 SM00361 RNA recognition motif domain IPR000504 107 178 SM00360 RNA recognition motif domain IPR003954 200 272 SM00361 RNA recognition motif domain IPR000504 200 272 SM00360 RNA recognition motif domain IPR003954 303 374 SM00361 RNA recognition motif domain IPR000504 303 374 SM00360 RNA recognition motif domain HMMTigr IPR006515 18 379 TIGR01628 Polyadenylate binding protein ProfileScan IPR000504 18 96 PS50102 RNA recognition motif domain IPR000504 106 182 PS50102 RNA recognition motif domain IPR000504 199 276 PS50102 RNA recognition motif domain IPR000504 302 378 PS50102 RNA recognition motif domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_543022 382 300407 100.0 100.0 NP_001129126 631 603407 66.6 95.5 NP_003810 644 603407 66.6 95.5 NP_001129125 660 603407 66.6 95.5 XP_005250918 636 604679 64.3 97.6 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB8819 Download

>KIBB8819  1146 bp
ATGGGGAGCGGGGAGCCTAATCCTGCTGGCAAGAAAAAGAAGTATCTCAAGGCCGCTCTG
TACGTGGGTGACTTGGACCCAGATGTCACCGAGGACATGCTCTATAAGAAGTTCAGGCCT
GCTGGCCCTCTGCGATTCACCCGAATCTGCCGTGATCCGGTGACCCGCAGCCCCCTGGGC
TATGGGTATGTTAACTTCCGCTTTCCCGCGGATGCAGAGTGGGCCTTGAACACCATGAAT
TTTGATTTGATTAATGGAAAACCATTCCGCCTTATGTGGTCTCAGCCAGATGACCGCTTA
AGAAAGTCTGGAGTGGGAAATATATTCATCAAAAACCTGGACAAATCCATAGACAATAGG
GCCCTGTTTTACTTATTTTCTGCTTTTGGGAACATTCTGTCCTGCAAAGTCGTATGCGAT
GACAACGGCTCTAAGGGTTATGCCTATGTTCACTTTGACAGCCTGGCCGCTGCCAATAGA
GCCATCTGGCACATGAATGGAGTGCGGCTCAACAACCGCCAGGTGTATGTTGGCAGATTC
AAATTCCCAGAAGAGCGGGCGGCTGAGGTCAGAACCAGGGATAGAGCAACTTTCACCAAT
GTTTTCGTTAAAAACATTGGAGACGACATAGATGACGAAAAACTGAAGGAACTTTTCTGT
GAATATGGGCCAACTGAGAGTGTTAAAGTAATAAGAGATGCCAGTGGGAAATCTAAAGGC
TTTGGATTTGTGAGATATGAGACACACGAGGCTGCCCAAAAGGCTGTGCTAGACTTGCAT
GGAAAGTCCATCGATGGAAAAGTCCTCTATGTAGGGCGAGCACAGAAGAAAATTGAACGC
CTGGCTGAGTTGAGGCGGAGATTTGAACGGCTGAGGTTAAAAGAAAAAAGTCGGCCCCCA
GGGGTGCCTATCTATATTAAGAACTTGGATGAGACAATCAATGATGAAAAACTGAAGGAG
GAATTTTCTTCCTTTGGGTCAATTAGTCGGGCCAAAGTGATGATGGAAGTGGGGCAAGGC
AAAGGATTTGGTGTGGTCTGCTTTTCCTCTTTTGAAGAGGCTACCAAAGCAGTGGATGAG
ATGAATGGCCGCATAGTGGGCTCCAAGCCCCTGCATGTCACCCTGGGCCAGGCCAGGCGC
AGGTGC

ORF Protein

Cloned ORF protein sequence for pF1KB8819 Download

>KIBB8819  382 aa
MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
MNGRIVGSKPLHVTLGQARRRC

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB8819 Download

>pF1KB8819  4259 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGGGAGCGGG
GAGCCTAATCCTGCTGGCAAGAAAAAGAAGTATCTCAAGGCCGCTCTGTACGTGGGTGAC
TTGGACCCAGATGTCACCGAGGACATGCTCTATAAGAAGTTCAGGCCTGCTGGCCCTCTG
CGATTCACCCGAATCTGCCGTGATCCGGTGACCCGCAGCCCCCTGGGCTATGGGTATGTT
AACTTCCGCTTTCCCGCGGATGCAGAGTGGGCCTTGAACACCATGAATTTTGATTTGATT
AATGGAAAACCATTCCGCCTTATGTGGTCTCAGCCAGATGACCGCTTAAGAAAGTCTGGA
GTGGGAAATATATTCATCAAAAACCTGGACAAATCCATAGACAATAGGGCCCTGTTTTAC
TTATTTTCTGCTTTTGGGAACATTCTGTCCTGCAAAGTCGTATGCGATGACAACGGCTCT
AAGGGTTATGCCTATGTTCACTTTGACAGCCTGGCCGCTGCCAATAGAGCCATCTGGCAC
ATGAATGGAGTGCGGCTCAACAACCGCCAGGTGTATGTTGGCAGATTCAAATTCCCAGAA
GAGCGGGCGGCTGAGGTCAGAACCAGGGATAGAGCAACTTTCACCAATGTTTTCGTTAAA
AACATTGGAGACGACATAGATGACGAAAAACTGAAGGAACTTTTCTGTGAATATGGGCCA
ACTGAGAGTGTTAAAGTAATAAGAGATGCCAGTGGGAAATCTAAAGGCTTTGGATTTGTG
AGATATGAGACACACGAGGCTGCCCAAAAGGCTGTGCTAGACTTGCATGGAAAGTCCATC
GATGGAAAAGTCCTCTATGTAGGGCGAGCACAGAAGAAAATTGAACGCCTGGCTGAGTTG
AGGCGGAGATTTGAACGGCTGAGGTTAAAAGAAAAAAGTCGGCCCCCAGGGGTGCCTATC
TATATTAAGAACTTGGATGAGACAATCAATGATGAAAAACTGAAGGAGGAATTTTCTTCC
TTTGGGTCAATTAGTCGGGCCAAAGTGATGATGGAAGTGGGGCAAGGCAAAGGATTTGGT
GTGGTCTGCTTTTCCTCTTTTGAAGAGGCTACCAAAGCAGTGGATGAGATGAATGGCCGC
ATAGTGGGCTCCAAGCCCCTGCATGTCACCCTGGGCCAGGCCAGGCGCAGGTGCGTTTAA
ACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGA
TCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATA
ACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGG
AACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAG
CCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCA
GTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCG
CTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTG
CCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTC
TTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGG
TCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAG
AGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTC
CGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTG
AATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGC
GCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTG
CCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCT
GATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCG
AAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGAT
CTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGT
ATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATG
GTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGC
TATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCT
GACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTAT
CGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGA
CGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGA
TAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGC
CGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACG
CTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGG
AAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTT
TCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGT
GTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTG
CGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACT
GGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTT
CTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCT
GCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCAC
CGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATT
TCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACG
TTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTC
CGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAAT
GGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTAT
TCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCAT
TTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGG
GATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTC
CGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATC
AGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCC
ACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC
TCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAG
ACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATC
CGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCC
CGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTG
CGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT