GJC2 ORF clone pF1KB7170

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Flexi ORF Clone pF1KB7170

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Clone info.

Species

human

Clone Name

pF1KB7170 Sequence (with vector) Restriction Map

Product ID

FXC20853

HaloTag Clone PID

ORF Sequence

DNA sequence (1317 bp)
Protein sequence (439 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIBB7170

Symbol

GJC2

Alias : CX46.6, Cx47, GJA12, HLD2, LMPH1C, LMPHM3, PMLDAR, SPG44

Description

gap junction protein, gamma 2, 47kDa

Original Clone ID

cp01175

Features of the cloned ORF sequence

Description

Length: 1317 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 439 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS1569.1 3.9e-111 100.0 GJC2 CCDS11487.1 3.3e-20 47.1 GJC1 CCDS9289.1 9.6e-13 36.4 GJA3 CCDS5025.1 4.6e-12 36.9 GJA10 CCDS30834.1 5.2e-12 33.6 GJA8 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR000500 23 47 PR00206 Connexin IPR000500 54 76 PR00206 Connexin IPR000500 79 99 PR00206 Connexin IPR000500 209 235 PR00206 Connexin IPR000500 245 265 PR00206 Connexin IPR000500 266 289 PR00206 Connexin HMMPfam IPR013092 5 109 PF00029 Connexin IPR019570 223 289 PF10582 Gap junction protein HMMSmart IPR013092 45 78 SM00037 Connexin
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 23 VGKVWLTVLVVFRIVLTAVGGEA 45 PRIMARY 23 2 80 WVFQIVVISTPSVMYLGYAVHRL 102 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_065168 439 608803,608804,613206,613480 100.0 100.0 XP_005256977 396 608655 47.1 99.3 NP_005488 396 608655 47.1 99.3 XP_005256978 396 608655 47.1 99.3 NP_001073852 396 608655 47.1 99.3 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB7170 Download

>KIBB7170  1317 bp
ATGACCAACATGAGCTGGAGCTTCCTGACGCGGCTGCTGGAGGAGATCCACAACCACTCC
ACCTTCGTGGGCAAGGTGTGGCTCACGGTGCTGGTGGTCTTCCGCATCGTGCTGACGGCT
GTGGGCGGCGAGGCCATCTACTCGGACGAGCAGGCCAAGTTCACTTGCAACACGCGGCAG
CCAGGCTGCGACAACGTCTGCTATGACGCCTTCGCGCCCCTGTCGCACGTGCGCTTCTGG
GTCTTCCAGATTGTGGTCATCTCCACGCCCTCGGTCATGTACCTGGGCTACGCCGTGCAC
CGCCTGGCCCGTGCGTCTGAGCAGGAGCGGCGCCGCGCCCTCCGCCGCCGCCCGGGGCCA
CGCCGCGCGCCCCGAGCGCACCTGCCGCCCCCGCACGCCGGCTGGCCTGAGCCCGCCGAC
CTGGGCGAGGAGGAGCCCATGCTGGGCCTGGGCGAGGAGGAGGAGGAGGAGGAGACGGGG
GCAGCCGAGGGCGCCGGCGAGGAAGCGGAGGAGGCAGGCGCGGAGGAGGCGTGCACTAAG
GCGGTCGGCGCTGACGGCAAGGCGGCAGGGACCCCGGGCCCGACCGGGCAACACGATGGG
CGGAGGCGCATCCAGCGGGAGGGCCTGATGCGCGTGTACGTGGCCCAGCTGGTGGCCAGG
GCAGCTTTCGAGGTGGCCTTCCTGGTGGGCCAGTACCTGCTGTACGGCTTCGAGGTGCGA
CCGTTCTTTCCCTGCAGCCGCCAGCCCTGCCCGCACGTGGTGGACTGCTTCGTGTCGCGC
CCTACTGAAAAGACGGTCTTCCTGCTGGTTATGTACGTGGTCAGCTGCCTGTGCCTGCTG
CTCAACCTCTGTGAGATGGCCCACCTGGGCTTGGGCAGCGCGCAGGACGCGGTGCGCGGC
CGCCGCGGCCCCCCGGCCTCCGCCCCCGCCCCCGCGCCGCGGCCCCCGCCCTGCGCCTTC
CCTGCGGCGGCCGCTGGCTTGGCCTGCCCGCCCGACTACAGCCTGGTGGTGCGGGCGGCC
GAGCGCGCTCGGGCGCATGACCAGAACCTGGCAAACCTGGCCCTGCAGGCGCTGCGCGAC
GGGGCAGCGGCTGGGGACCGCGACCGGGACAGTTCGCCGTGCGTCGGCCTCCCTGCGGCC
TCCCGGGGGCCCCCCAGAGCAGGCGCCCCCGCGTCCCGGACGGGCAGTGCTACCTCTGCG
GGCACTGTCGGGGAGCAGGGCCGGCCCGGCACCCACGAGCGGCCAGGAGCCAAGCCCAGG
GCTGGCTCCGAGAAGGGCAGTGCCAGCAGCAGGGACGGGAAGACCACCGTGTGGATC

ORF Protein

Cloned ORF protein sequence for pF1KB7170 Download

>KIBB7170  439 aa
MTNMSWSFLTRLLEEIHNHSTFVGKVWLTVLVVFRIVLTAVGGEAIYSDEQAKFTCNTRQ
PGCDNVCYDAFAPLSHVRFWVFQIVVISTPSVMYLGYAVHRLARASEQERRRALRRRPGP
RRAPRAHLPPPHAGWPEPADLGEEEPMLGLGEEEEEEETGAAEGAGEEAEEAGAEEACTK
AVGADGKAAGTPGPTGQHDGRRRIQREGLMRVYVAQLVARAAFEVAFLVGQYLLYGFEVR
PFFPCSRQPCPHVVDCFVSRPTEKTVFLLVMYVVSCLCLLLNLCEMAHLGLGSAQDAVRG
RRGPPASAPAPAPRPPPCAFPAAAAGLACPPDYSLVVRAAERARAHDQNLANLALQALRD
GAAAGDRDRDSSPCVGLPAASRGPPRAGAPASRTGSATSAGTVGEQGRPGTHERPGAKPR
AGSEKGSASSRDGKTTVWI

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB7170 Download

>pF1KB7170  4430 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGACCAACATG
AGCTGGAGCTTCCTGACGCGGCTGCTGGAGGAGATCCACAACCACTCCACCTTCGTGGGC
AAGGTGTGGCTCACGGTGCTGGTGGTCTTCCGCATCGTGCTGACGGCTGTGGGCGGCGAG
GCCATCTACTCGGACGAGCAGGCCAAGTTCACTTGCAACACGCGGCAGCCAGGCTGCGAC
AACGTCTGCTATGACGCCTTCGCGCCCCTGTCGCACGTGCGCTTCTGGGTCTTCCAGATT
GTGGTCATCTCCACGCCCTCGGTCATGTACCTGGGCTACGCCGTGCACCGCCTGGCCCGT
GCGTCTGAGCAGGAGCGGCGCCGCGCCCTCCGCCGCCGCCCGGGGCCACGCCGCGCGCCC
CGAGCGCACCTGCCGCCCCCGCACGCCGGCTGGCCTGAGCCCGCCGACCTGGGCGAGGAG
GAGCCCATGCTGGGCCTGGGCGAGGAGGAGGAGGAGGAGGAGACGGGGGCAGCCGAGGGC
GCCGGCGAGGAAGCGGAGGAGGCAGGCGCGGAGGAGGCGTGCACTAAGGCGGTCGGCGCT
GACGGCAAGGCGGCAGGGACCCCGGGCCCGACCGGGCAACACGATGGGCGGAGGCGCATC
CAGCGGGAGGGCCTGATGCGCGTGTACGTGGCCCAGCTGGTGGCCAGGGCAGCTTTCGAG
GTGGCCTTCCTGGTGGGCCAGTACCTGCTGTACGGCTTCGAGGTGCGACCGTTCTTTCCC
TGCAGCCGCCAGCCCTGCCCGCACGTGGTGGACTGCTTCGTGTCGCGCCCTACTGAAAAG
ACGGTCTTCCTGCTGGTTATGTACGTGGTCAGCTGCCTGTGCCTGCTGCTCAACCTCTGT
GAGATGGCCCACCTGGGCTTGGGCAGCGCGCAGGACGCGGTGCGCGGCCGCCGCGGCCCC
CCGGCCTCCGCCCCCGCCCCCGCGCCGCGGCCCCCGCCCTGCGCCTTCCCTGCGGCGGCC
GCTGGCTTGGCCTGCCCGCCCGACTACAGCCTGGTGGTGCGGGCGGCCGAGCGCGCTCGG
GCGCATGACCAGAACCTGGCAAACCTGGCCCTGCAGGCGCTGCGCGACGGGGCAGCGGCT
GGGGACCGCGACCGGGACAGTTCGCCGTGCGTCGGCCTCCCTGCGGCCTCCCGGGGGCCC
CCCAGAGCAGGCGCCCCCGCGTCCCGGACGGGCAGTGCTACCTCTGCGGGCACTGTCGGG
GAGCAGGGCCGGCCCGGCACCCACGAGCGGCCAGGAGCCAAGCCCAGGGCTGGCTCCGAG
AAGGGCAGTGCCAGCAGCAGGGACGGGAAGACCACCGTGTGGATCGTTTAAACGAATTCG
AGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGC
TAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATA
ACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATC
CGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCA
AGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGAC
ATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTA
GCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGG
GCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCA
AGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGC
ATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTC
GGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCA
GCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTG
CAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTG
CTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAG
GATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATG
CGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGC
ATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAA
GAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGAT
GGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAAT
GGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGAC
ATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTC
CTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTT
GACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACC
GGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGG
AAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCT
GGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCA
GAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCT
CGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTC
GGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGT
TCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATC
CGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGC
CACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTG
GTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCC
AGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAG
CGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGA
TCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGAT
TTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATAC
AGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTC
AGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGT
TAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTG
TCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGT
AAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGA
TGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAG
AAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCC
CATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGC
GAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT
TTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAG
CGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAA
CTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTAC
AAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT