COL8A1 ORF clone pF1KB3288

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Flexi ORF Clone pF1KB3288

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Clone info.

Species

human

Clone Name

pF1KB3288 Sequence (with vector) Restriction Map

Product ID

FXC01729

HaloTag Clone PID

ORF Sequence

DNA sequence (2232 bp)
Protein sequence (744 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1KOF Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384777]

Gene

KIBB3288

Symbol

COL8A1

Alias : C3orf7

Description

collagen, type VIII, alpha 1, transcript variant 1

Original Clone ID

ah02003

Features of the cloned ORF sequence

Description

Length: 2232 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 744 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS2934.1 4.8e-114 100.0 COL8A1 CCDS403.1 2.2e-51 57.2 COL8A2 CCDS72756.1 5.6e-51 58.6 COL8A2 CCDS5105.1 1.8e-36 52.7 COL10A1 CCDS6982.1 1.3e-29 44.8 COL5A1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR001073 626 652 PR00007 Complement C1q protein IPR001073 653 672 PR00007 Complement C1q protein IPR001073 698 719 PR00007 Complement C1q protein IPR001073 732 742 PR00007 Complement C1q protein HMMPfam IPR008160 118 170 PF01391 Collagen triple helix repeat IPR008160 158 213 PF01391 Collagen triple helix repeat IPR008160 423 478 PF01391 Collagen triple helix repeat IPR008160 474 529 PF01391 Collagen triple helix repeat IPR008160 519 571 PF01391 Collagen triple helix repeat IPR001073 617 741 PF00386 Complement C1q protein HMMSmart IPR001073 609 744 SM00110 Complement C1q protein ProfileScan IPR001073 611 744 PS50871 Complement C1q protein
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 2 AVLPGPLQLLGVLLTISLSSIRL 24 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_065084 744 120251 100.0 100.0 NP_001841 744 120251 100.0 100.0 NP_005193 703 120252,136800,609140 57.2 88.2 XP_005270534 780 120252,136800,609140 57.2 88.2 NP_001281276 638 120252,136800,609140 58.6 85.1 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB3288 Download

>KIBB3288  2232 bp
ATGGCTGTGCTGCCTGGCCCTCTGCAGCTGCTGGGAGTGCTGCTTACCATTTCCCTGAGT
TCCATCAGGCTCATTCAGGCTGGTGCCTACTATGGGATCAAGCCGCTGCCACCTCAAATT
CCTCCTCAGATGCCACCACAAATTCCACAATACCAGCCCCTGGGTCAGCAAGTACCTCAC
ATGCCTTTGGCCAAAGATGGCCTTGCCATGGGCAAGGAGATGCCCCACTTGCAGTATGGC
AAAGAGTATCCACACCTACCCCAATATATGAAGGAAATTCAACCGGCGCCAAGAATGGGC
AAGGAAGCCGTACCCAAGAAAGGCAAAGAAATACCATTAGCCAGTTTACGAGGGGAACAA
GGTCCCCGTGGAGAGCCTGGCCCAAGAGGACCACCTGGGCCCCCTGGTTTGCCAGGTCAT
GGGATACCTGGAATTAAAGGAAAACCAGGGCCACAGGGATATCCAGGAGTTGGAAAGCCA
GGTATGCCTGGAATGCCAGGGAAGCCAGGAGCCATGGGCATGCCTGGGGCAAAAGGAGAA
ATTGGACAGAAAGGGGAAATTGGGCCTATGGGGATCCCAGGACCACAAGGACCTCCAGGG
CCTCATGGACTTCCTGGCATTGGGAAGCCAGGTGGGCCAGGGTTACCAGGGCAACCAGGA
CCAAAGGGTGATCGAGGACCCAAAGGACTACCAGGACCTCAAGGCCTTCGGGGTCCTAAA
GGAGACAAGGGCTTCGGGATGCCAGGTGCGCCAGGTGTAAAGGGGCCTCCAGGGATGCAC
GGCCCTCCCGGCCCTGTTGGACTGCCAGGAGTGGGCAAACCAGGAGTGACAGGCTTCCCT
GGGCCCCAGGGCCCCCTGGGAAAGCCAGGGGCTCCAGGAGAACCTGGGCCACAAGGCCCT
ATTGGGGTACCGGGGGTTCAAGGACCTCCTGGGATACCCGGAATTGGAAAGCCAGGCCAG
GATGGGATCCCAGGCCAGCCAGGATTTCCAGGTGGCAAAGGGGAGCAAGGACTGCCAGGG
CTACCAGGACCCCCAGGCCTTCCAGGGATTGGGAAACCAGGCTTCCCAGGACCCAAAGGT
GACCGGGGCATGGGAGGTGTTCCTGGGGCTCTTGGACCAAGAGGGGAGAAAGGACCAATA
GGTGCCCCAGGAATAGGGGGTCCTCCAGGAGAGCCAGGCCTGCCTGGAATCCCAGGTCCT
ATGGGCCCTCCAGGTGCTATTGGTTTTCCTGGACCCAAAGGAGAAGGTGGGATTGTAGGG
CCACAGGGGCCACCAGGTCCCAAGGGTGAGCCAGGGCTTCAAGGCTTCCCAGGAAAGCCA
GGTTTCCTTGGTGAAGTAGGGCCTCCTGGCATGAGGGGTTTGCCAGGTCCCATAGGGCCC
AAGGGGGAAGCTGGGCAAAAAGGTGTACCAGGACTCCCTGGTGTTCCAGGGCTTCTCGGA
CCTAAGGGAGAGCCAGGAATCCCAGGGGATCAGGGTTTACAGGGCCCCCCAGGTATCCCA
GGGATTGGGGGCCCTAGTGGCCCCATTGGACCACCTGGGATTCCAGGCCCCAAAGGGGAG
CCGGGCCTCCCAGGGCCCCCTGGGTTCCCTGGTATAGGGAAACCCGGAGTGGCAGGACTT
CATGGCCCCCCAGGGAAGCCTGGTGCCCTTGGTCCTCAAGGCCAGCCTGGCCTTCCAGGA
CCCCCAGGCCCTCCAGGACCTCCAGGACCCCCAGCTGTGATGCCCCCTACACCACCACCC
CAGGGAGAGTATCTGCCAGATATGGGGCTGGGAATTGATGGCGTGAAACCCCCCCATGCC
TACGGGGCTAAGAAAGGCAAGAATGGAGGGCCAGCCTATGAGATGCCTGCATTTACCGCC
GAGCTAACCGCACCTTTCCCACCGGTGGGGGCCCCAGTGAAGTTTAACAAACTGCTGTAT
AACGGCAGACAGAACTACAACCCGCAGACAGGCATCTTCACCTGTGAGGTCCCTGGTGTC
TACTACTTTGCATACCACGTTCACTGCAAGGGGGGCAACGTGTGGGTTGCTCTATTCAAG
AACAACGAGCCCGTGATGTACACGTACGACGAGTACAAAAAGGGCTTCCTGGACCAGGCA
TCTGGGAGTGCAGTGCTGCTGCTCAGGCCCGGAGACCGGGTGTTCCTCCAGATGCCCTCA
GAACAGGCTGCAGGACTGTATGCCGGGCAGTATGTCCACTCCTCCTTTTCAGGATATTTA
TTGTATCCCATG

ORF Protein

Cloned ORF protein sequence for pF1KB3288 Download

>KIBB3288  744 aa
MAVLPGPLQLLGVLLTISLSSIRLIQAGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPH
MPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQ
GPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGE
IGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPK
GDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGP
IGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKG
DRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVG
PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLG
PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGL
HGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHA
YGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGV
YYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPS
EQAAGLYAGQYVHSSFSGYLLYPM

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB3288 Download

>pF1KB3288  5345 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCTGTGCTG
CCTGGCCCTCTGCAGCTGCTGGGAGTGCTGCTTACCATTTCCCTGAGTTCCATCAGGCTC
ATTCAGGCTGGTGCCTACTATGGGATCAAGCCGCTGCCACCTCAAATTCCTCCTCAGATG
CCACCACAAATTCCACAATACCAGCCCCTGGGTCAGCAAGTACCTCACATGCCTTTGGCC
AAAGATGGCCTTGCCATGGGCAAGGAGATGCCCCACTTGCAGTATGGCAAAGAGTATCCA
CACCTACCCCAATATATGAAGGAAATTCAACCGGCGCCAAGAATGGGCAAGGAAGCCGTA
CCCAAGAAAGGCAAAGAAATACCATTAGCCAGTTTACGAGGGGAACAAGGTCCCCGTGGA
GAGCCTGGCCCAAGAGGACCACCTGGGCCCCCTGGTTTGCCAGGTCATGGGATACCTGGA
ATTAAAGGAAAACCAGGGCCACAGGGATATCCAGGAGTTGGAAAGCCAGGTATGCCTGGA
ATGCCAGGGAAGCCAGGAGCCATGGGCATGCCTGGGGCAAAAGGAGAAATTGGACAGAAA
GGGGAAATTGGGCCTATGGGGATCCCAGGACCACAAGGACCTCCAGGGCCTCATGGACTT
CCTGGCATTGGGAAGCCAGGTGGGCCAGGGTTACCAGGGCAACCAGGACCAAAGGGTGAT
CGAGGACCCAAAGGACTACCAGGACCTCAAGGCCTTCGGGGTCCTAAAGGAGACAAGGGC
TTCGGGATGCCAGGTGCGCCAGGTGTAAAGGGGCCTCCAGGGATGCACGGCCCTCCCGGC
CCTGTTGGACTGCCAGGAGTGGGCAAACCAGGAGTGACAGGCTTCCCTGGGCCCCAGGGC
CCCCTGGGAAAGCCAGGGGCTCCAGGAGAACCTGGGCCACAAGGCCCTATTGGGGTACCG
GGGGTTCAAGGACCTCCTGGGATACCCGGAATTGGAAAGCCAGGCCAGGATGGGATCCCA
GGCCAGCCAGGATTTCCAGGTGGCAAAGGGGAGCAAGGACTGCCAGGGCTACCAGGACCC
CCAGGCCTTCCAGGGATTGGGAAACCAGGCTTCCCAGGACCCAAAGGTGACCGGGGCATG
GGAGGTGTTCCTGGGGCTCTTGGACCAAGAGGGGAGAAAGGACCAATAGGTGCCCCAGGA
ATAGGGGGTCCTCCAGGAGAGCCAGGCCTGCCTGGAATCCCAGGTCCTATGGGCCCTCCA
GGTGCTATTGGTTTTCCTGGACCCAAAGGAGAAGGTGGGATTGTAGGGCCACAGGGGCCA
CCAGGTCCCAAGGGTGAGCCAGGGCTTCAAGGCTTCCCAGGAAAGCCAGGTTTCCTTGGT
GAAGTAGGGCCTCCTGGCATGAGGGGTTTGCCAGGTCCCATAGGGCCCAAGGGGGAAGCT
GGGCAAAAAGGTGTACCAGGACTCCCTGGTGTTCCAGGGCTTCTCGGACCTAAGGGAGAG
CCAGGAATCCCAGGGGATCAGGGTTTACAGGGCCCCCCAGGTATCCCAGGGATTGGGGGC
CCTAGTGGCCCCATTGGACCACCTGGGATTCCAGGCCCCAAAGGGGAGCCGGGCCTCCCA
GGGCCCCCTGGGTTCCCTGGTATAGGGAAACCCGGAGTGGCAGGACTTCATGGCCCCCCA
GGGAAGCCTGGTGCCCTTGGTCCTCAAGGCCAGCCTGGCCTTCCAGGACCCCCAGGCCCT
CCAGGACCTCCAGGACCCCCAGCTGTGATGCCCCCTACACCACCACCCCAGGGAGAGTAT
CTGCCAGATATGGGGCTGGGAATTGATGGCGTGAAACCCCCCCATGCCTACGGGGCTAAG
AAAGGCAAGAATGGAGGGCCAGCCTATGAGATGCCTGCATTTACCGCCGAGCTAACCGCA
CCTTTCCCACCGGTGGGGGCCCCAGTGAAGTTTAACAAACTGCTGTATAACGGCAGACAG
AACTACAACCCGCAGACAGGCATCTTCACCTGTGAGGTCCCTGGTGTCTACTACTTTGCA
TACCACGTTCACTGCAAGGGGGGCAACGTGTGGGTTGCTCTATTCAAGAACAACGAGCCC
GTGATGTACACGTACGACGAGTACAAAAAGGGCTTCCTGGACCAGGCATCTGGGAGTGCA
GTGCTGCTGCTCAGGCCCGGAGACCGGGTGTTCCTCCAGATGCCCTCAGAACAGGCTGCA
GGACTGTATGCCGGGCAGTATGTCCACTCCTCCTTTTCAGGATATTTATTGTATCCCATG
GTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCA
AGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGA
GCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAA
AGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCA
TGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGAT
AGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGT
GTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAA
GAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATG
GCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGA
TGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGG
GTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCC
GTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGT
GCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTT
CCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGC
GAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATC
ATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCAC
CAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAG
GATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAG
GCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAAT
ATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCG
GACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAA
TGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCC
TTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACC
AAGCGACGCCCAACCGGACTATAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCAT
GACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGAT
CAAAGGATCTTCTTGAAATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAA
ACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAA
GGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTT
AGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTT
ACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATA
GTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTT
GGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCAC
GCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGA
GCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCG
CCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAA
AAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACAT
GTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGC
TGATACCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATG
AAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCAT
AGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGT
TGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAA
TTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCA
GTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGAT
TAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGT
GGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGT
GGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGT
CGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGA
CAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAG
GACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC
TTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCG
CTCAT