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SpecieshumanProduct IDFXC07890Cloning SiteSgfI-PmeIGenBank AccessionGeneKIEE2473SymbolABCB6
Alias : ABC, LAN, MTABC3, PRP, umatDescriptionATP-binding cassette, sub-family B (MDR/TAP), member 6 (Langereis blood group)Original Clone IDoc01529
Length: 2526 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 842 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS2436.1 0 100.0 ABCB6 CCDS65291.1 1.8e-97 42.0 ABCB7 CCDS14428.1 1.8e-97 42.0 ABCB7 CCDS65290.1 2e-92 39.4 ABCB7 CCDS75994.1 2e-92 39.5 ABCB7
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001140 266 544 PF00664 ABC transporter IPR003439 630 755 PF00005 ABC transporter-like HMMSmart IPR003593 615 816 SM00382 ATPase ProfileScan IPR017940 266 556 PS50929 ABC transporter IPR003439 590 824 PS50893 ABC transporter-like
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 26 CFFFTLVPSTRMALGTLALVLAL 48 SECONDARY 23 2 72 PYVLQLLLATLQAALPLAGLAGR 94 PRIMARY 23 3 105 SYLLLASVLESLAGACGLWLLVV 127 SECONDARY 23 4 137 AMGIWIKFRHSPGLLLLWTVAFA 159 SECONDARY 23 5 185 QFSLWVLRYVVSGGLFVLGLWAP 207 SECONDARY 23 6 261 LQLVVLICLGLMGLERALNVLVP 283 PRIMARY 23 7 381 TGLLSYLVFNVIPTLADIIIGII 403 PRIMARY 23 8 412 WFGLIVFLCMSLYLTLTIVVTEW 434 PRIMARY 23 9 501 QNLVIGLGLLAGSLLCAYFVTEQ 523 PRIMARY 23 10 534 GTYIIQLYMPLNWFGTYYRMIQT 556 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005680 842 111600,605452,609153,614497,615402 100.0 100.0 NP_001258626 712 300135,301310 39.4 80.0 NP_001258628 713 300135,301310 39.5 80.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE2473 Download>KIEE2473 2526 bp ATGGTGACTGTGGGCAACTACTGCGAGGCCGAAGGGCCCGTGGGTCCGGCCTGGATGCAG GATGGCCTGAGTCCCTGCTTCTTCTTCACGCTCGTGCCCTCGACGCGGATGGCTCTAGGG ACTCTGGCCTTGGTGCTGGCTCTTCCCTGCAGACGCCGGGAGCGGCCCGCTGGTGCTGAT TCGCTGTCTTGGGGGGCCGGCCCTCGCATCTCTCCCTACGTGCTGCAGCTGCTTCTGGCC ACACTTCAGGCGGCGCTGCCCCTGGCCGGCCTGGCTGGCCGGGTGGGCACTGCCCGGGGG GCCCCACTGCCAAGCTATCTACTTCTGGCCTCCGTGCTGGAGAGTCTGGCCGGCGCCTGT GGCCTGTGGCTGCTTGTCGTGGAGCGGAGCCAGGCACGGCAGCGTCTGGCAATGGGCATC TGGATCAAGTTCAGGCACAGCCCTGGTCTCCTGCTCCTCTGGACTGTGGCGTTTGCAGCT GAGAACTTGGCCCTGGTGTCTTGGAACAGCCCACAGTGGTGGTGGGCAAGGGCAGACTTG GGCCAGCAGGTTCAGTTTAGCCTGTGGGTGCTGCGGTATGTGGTCTCTGGAGGGCTGTTT GTCCTGGGTCTCTGGGCCCCTGGACTTCGTCCCCAGTCCTATACATTGCAGGTTCATGAA GAGGACCAAGATGTGGAAAGGAGCCAGGTTCGGTCAGCAGCCCAACAGTCTACCTGGCGA GATTTTGGCAGGAAGCTCCGCCTCCTGAGTGGCTACCTGTGGCCTCGAGGGAGTCCAGCT CTGCAGCTGGTGGTGCTCATCTGCCTGGGGCTCATGGGTTTGGAACGGGCACTCAATGTG TTGGTGCCTATATTCTATAGGAACATTGTGAACTTGCTGACTGAGAAGGCACCTTGGAAC TCTCTGGCCTGGACTGTTACCAGTTACGTCTTCCTCAAGTTCCTCCAGGGGGGTGGCACT GGCAGTACAGGCTTCGTGAGCAACCTGCGCACCTTCCTGTGGATCCGGGTGCAGCAGTTC ACGTCTCGGCGGGTGGAGCTGCTCATCTTCTCCCACCTGCACGAGCTCTCACTGCGCTGG CACCTGGGGCGCCGCACAGGGGAGGTGCTGCGGATCGCGGATCGGGGCACATCCAGTGTC ACAGGGCTGCTCAGCTACCTGGTGTTCAATGTCATCCCCACGCTGGCCGACATCATCATT GGCATCATCTACTTCAGCATGTTCTTCAACGCCTGGTTTGGCCTCATTGTGTTCCTGTGC ATGAGTCTTTACCTCACCCTGACCATTGTGGTCACTGAGTGGAGAACCAAGTTTCGTCGT GCTATGAACACACAGGAGAACGCTACCCGGGCACGAGCAGTGGACTCTCTGCTAAACTTC GAGACGGTGAAGTATTACAACGCCGAGAGTTACGAAGTGGAACGCTATCGAGAGGCCATC ATCAAATATCAGGGTTTGGAGTGGAAGTCGAGCGCTTCACTGGTTTTACTAAATCAGACC CAGAACCTGGTAATTGGGCTCGGGCTCCTCGCCGGCTCCCTGCTTTGCGCATACTTTGTC ACTGAGCAGAAGCTACAGGTTGGGGACTATGTGCTCTTTGGCACCTACATTATCCAGCTG TACATGCCCCTCAATTGGTTTGGCACCTACTACAGGATGATCCAGACCAACTTCATTGAC ATGGAGAACATGTTTGACTTGCTGAAAGAGGAGACAGAAGTGAAGGACCTTCCTGGAGCA GGGCCCCTTCGCTTTCAGAAGGGCCGTATTGAGTTTGAGAACGTGCACTTCAGCTATGCC GATGGGCGGGAGACTCTGCAGGACGTGTCTTTCACTGTGATGCCTGGACAGACACTTGCC CTGGTGGGCCCATCTGGGGCAGGGAAGAGCACAATTTTGCGCCTGCTGTTTCGCTTCTAC GACATCAGCTCTGGCTGCATCCGAATAGATGGGCAGGACATTTCACAGGTGACCCAGGCC TCTCTCCGGTCTCACATTGGAGTTGTGCCCCAAGACACTGTCCTCTTTAATGACACCATC GCCGACAATATCCGTTACGGCCGTGTCACAGCTGGGAATGATGAGGTGGAGGCTGCTGCT CAGGCTGCAGGCATCCATGATGCCATTATGGCTTTCCCTGAAGGGTACAGGACACAGGTG GGCGAGCGGGGACTGAAGCTGAGCGGCGGGGAGAAGCAGCGCGTCGCCATTGCCCGCACC ATCCTCAAGGCTCCGGGCATCATTCTGCTGGATGAGGCAACGTCAGCGCTGGATACATCT AATGAGAGGGCCATCCAGGCTTCTCTGGCCAAAGTCTGTGCCAACCGCACCACCATCGTA GTGGCACACAGGCTCTCAACTGTGGTCAATGCTGACCAGATCCTCGTCATCAAGGATGGC TGCATCGTGGAGAGGGGACGACACGAGGCTCTGTTGTCCCGAGGTGGGGTGTATGCTGAC ATGTGGCAGCTGCAGCAGGGACAGGAAGAAACCTCTGAAGACACTAAGCCTCAGACCATG GAACGG
Cloned ORF protein sequence for pF1KE2473 Download>KIEE2473 842 aa MVTVGNYCEAEGPVGPAWMQDGLSPCFFFTLVPSTRMALGTLALVLALPCRRRERPAGAD SLSWGAGPRISPYVLQLLLATLQAALPLAGLAGRVGTARGAPLPSYLLLASVLESLAGAC GLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNSPQWWWARADL GQQVQFSLWVLRYVVSGGLFVLGLWAPGLRPQSYTLQVHEEDQDVERSQVRSAAQQSTWR DFGRKLRLLSGYLWPRGSPALQLVVLICLGLMGLERALNVLVPIFYRNIVNLLTEKAPWN SLAWTVTSYVFLKFLQGGGTGSTGFVSNLRTFLWIRVQQFTSRRVELLIFSHLHELSLRW HLGRRTGEVLRIADRGTSSVTGLLSYLVFNVIPTLADIIIGIIYFSMFFNAWFGLIVFLC MSLYLTLTIVVTEWRTKFRRAMNTQENATRARAVDSLLNFETVKYYNAESYEVERYREAI IKYQGLEWKSSASLVLLNQTQNLVIGLGLLAGSLLCAYFVTEQKLQVGDYVLFGTYIIQL YMPLNWFGTYYRMIQTNFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYA DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQA SLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQV GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIV VAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETSEDTKPQTM ER
Nucleotide Sequence (with vector) for pF1KE2473 Download>pF1KE2473 5639 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGTGACTGTG GGCAACTACTGCGAGGCCGAAGGGCCCGTGGGTCCGGCCTGGATGCAGGATGGCCTGAGT CCCTGCTTCTTCTTCACGCTCGTGCCCTCGACGCGGATGGCTCTAGGGACTCTGGCCTTG GTGCTGGCTCTTCCCTGCAGACGCCGGGAGCGGCCCGCTGGTGCTGATTCGCTGTCTTGG GGGGCCGGCCCTCGCATCTCTCCCTACGTGCTGCAGCTGCTTCTGGCCACACTTCAGGCG GCGCTGCCCCTGGCCGGCCTGGCTGGCCGGGTGGGCACTGCCCGGGGGGCCCCACTGCCA AGCTATCTACTTCTGGCCTCCGTGCTGGAGAGTCTGGCCGGCGCCTGTGGCCTGTGGCTG CTTGTCGTGGAGCGGAGCCAGGCACGGCAGCGTCTGGCAATGGGCATCTGGATCAAGTTC AGGCACAGCCCTGGTCTCCTGCTCCTCTGGACTGTGGCGTTTGCAGCTGAGAACTTGGCC CTGGTGTCTTGGAACAGCCCACAGTGGTGGTGGGCAAGGGCAGACTTGGGCCAGCAGGTT CAGTTTAGCCTGTGGGTGCTGCGGTATGTGGTCTCTGGAGGGCTGTTTGTCCTGGGTCTC TGGGCCCCTGGACTTCGTCCCCAGTCCTATACATTGCAGGTTCATGAAGAGGACCAAGAT GTGGAAAGGAGCCAGGTTCGGTCAGCAGCCCAACAGTCTACCTGGCGAGATTTTGGCAGG AAGCTCCGCCTCCTGAGTGGCTACCTGTGGCCTCGAGGGAGTCCAGCTCTGCAGCTGGTG GTGCTCATCTGCCTGGGGCTCATGGGTTTGGAACGGGCACTCAATGTGTTGGTGCCTATA TTCTATAGGAACATTGTGAACTTGCTGACTGAGAAGGCACCTTGGAACTCTCTGGCCTGG ACTGTTACCAGTTACGTCTTCCTCAAGTTCCTCCAGGGGGGTGGCACTGGCAGTACAGGC TTCGTGAGCAACCTGCGCACCTTCCTGTGGATCCGGGTGCAGCAGTTCACGTCTCGGCGG GTGGAGCTGCTCATCTTCTCCCACCTGCACGAGCTCTCACTGCGCTGGCACCTGGGGCGC CGCACAGGGGAGGTGCTGCGGATCGCGGATCGGGGCACATCCAGTGTCACAGGGCTGCTC AGCTACCTGGTGTTCAATGTCATCCCCACGCTGGCCGACATCATCATTGGCATCATCTAC TTCAGCATGTTCTTCAACGCCTGGTTTGGCCTCATTGTGTTCCTGTGCATGAGTCTTTAC CTCACCCTGACCATTGTGGTCACTGAGTGGAGAACCAAGTTTCGTCGTGCTATGAACACA CAGGAGAACGCTACCCGGGCACGAGCAGTGGACTCTCTGCTAAACTTCGAGACGGTGAAG TATTACAACGCCGAGAGTTACGAAGTGGAACGCTATCGAGAGGCCATCATCAAATATCAG GGTTTGGAGTGGAAGTCGAGCGCTTCACTGGTTTTACTAAATCAGACCCAGAACCTGGTA ATTGGGCTCGGGCTCCTCGCCGGCTCCCTGCTTTGCGCATACTTTGTCACTGAGCAGAAG CTACAGGTTGGGGACTATGTGCTCTTTGGCACCTACATTATCCAGCTGTACATGCCCCTC AATTGGTTTGGCACCTACTACAGGATGATCCAGACCAACTTCATTGACATGGAGAACATG TTTGACTTGCTGAAAGAGGAGACAGAAGTGAAGGACCTTCCTGGAGCAGGGCCCCTTCGC TTTCAGAAGGGCCGTATTGAGTTTGAGAACGTGCACTTCAGCTATGCCGATGGGCGGGAG ACTCTGCAGGACGTGTCTTTCACTGTGATGCCTGGACAGACACTTGCCCTGGTGGGCCCA TCTGGGGCAGGGAAGAGCACAATTTTGCGCCTGCTGTTTCGCTTCTACGACATCAGCTCT GGCTGCATCCGAATAGATGGGCAGGACATTTCACAGGTGACCCAGGCCTCTCTCCGGTCT CACATTGGAGTTGTGCCCCAAGACACTGTCCTCTTTAATGACACCATCGCCGACAATATC CGTTACGGCCGTGTCACAGCTGGGAATGATGAGGTGGAGGCTGCTGCTCAGGCTGCAGGC ATCCATGATGCCATTATGGCTTTCCCTGAAGGGTACAGGACACAGGTGGGCGAGCGGGGA CTGAAGCTGAGCGGCGGGGAGAAGCAGCGCGTCGCCATTGCCCGCACCATCCTCAAGGCT CCGGGCATCATTCTGCTGGATGAGGCAACGTCAGCGCTGGATACATCTAATGAGAGGGCC ATCCAGGCTTCTCTGGCCAAAGTCTGTGCCAACCGCACCACCATCGTAGTGGCACACAGG CTCTCAACTGTGGTCAATGCTGACCAGATCCTCGTCATCAAGGATGGCTGCATCGTGGAG AGGGGACGACACGAGGCTCTGTTGTCCCGAGGTGGGGTGTATGCTGACATGTGGCAGCTG CAGCAGGGACAGGAAGAAACCTCTGAAGACACTAAGCCTCAGACCATGGAACGGGTTTAA ACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGA TCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATA ACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGG AACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAG CCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCA GTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCG CTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTG CCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTC TTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGG TCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAG AGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTC CGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTG AATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGC GCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTG CCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCT GATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCG AAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGAT CTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGT ATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATG GTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGC TATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCT GACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTAT CGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGA CGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGA TAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGC CGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACG CTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGG AAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTT TCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGT GTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTG CGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACT GGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTT CTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCT GCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCAC CGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATT TCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACG TTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTC CGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAAT GGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTAT TCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCAT TTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGG GATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTC CGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATC AGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCC ACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC TCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAG ACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATC CGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCC CGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTG CGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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