ZNF542P ORF clone FHC03194

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Halotag ORF Clone FHC03194

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Clone info.

Species

human

Clone Name

pFN21AB9609 Sequence (with vector) Restriction Map

Product ID

FHC03194

Flexi Clone PID

FXC03194

Original Clone PID

ORK03194

ORF Sequence

DNA sequence (723 bp)
Protein sequence (241 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464766]

Gene

KIBB9609

Symbol

ZNF542P

Alias : ZNF542

Description

zinc finger protein 542, pseudogene

Original Clone ID

cp00192

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 723 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 241 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS75904.1 7.8e-35 60.6 ZNF79 CCDS69664.1 9.1e-35 60.6 ZNF79 CCDS6871.1 9.4e-35 60.6 ZNF79 CCDS12491.1 2.5e-34 61.2 ZNF565 CCDS12501.1 4.7e-34 61.3 ZNF383 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR007087 17 39 PF00096 Zinc finger IPR007087 45 67 PF00096 Zinc finger IPR007087 73 95 PF00096 Zinc finger IPR007087 129 151 PF00096 Zinc finger IPR007087 157 179 PF00096 Zinc finger HMMSmart IPR015880 17 39 SM00355 Zinc finger IPR015880 45 67 SM00355 Zinc finger IPR015880 73 95 SM00355 Zinc finger IPR015880 101 123 SM00355 Zinc finger IPR015880 129 151 SM00355 Zinc finger IPR015880 157 179 SM00355 Zinc finger IPR015880 185 207 SM00355 Zinc finger IPR015880 213 233 SM00355 Zinc finger ProfileScan IPR007087 17 44 PS50157 Zinc finger IPR007087 45 72 PS50157 Zinc finger IPR007087 73 100 PS50157 Zinc finger IPR007087 101 128 PS50157 Zinc finger IPR007087 129 156 PS50157 Zinc finger IPR007087 157 184 PS50157 Zinc finger IPR007087 185 212 PS50157 Zinc finger IPR007087 213 240 PS50157 Zinc finger
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001273627 364 194552 60.6 97.9 NP_001273625 474 194552 60.6 97.9 XP_006717342 474 194552 60.6 97.9 NP_001273626 474 194552 60.6 97.9 NP_001309189 474 194552 60.6 97.9 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB9609 Download

>KIBB9609  723 bp
ATGACTCATCTCACACAGCATCAGACTACACATACGAGAGAAAAGTTCCATGAATGCAGT
GAATGTGGAAAGGCCTTCAGCCGTGTCTCAGCTCTTATAGATCACCAGCGAATTCATAGT
GGAGAAAAGCCGTATGAATGTAAGGAGTGTGGAAGAGCCTTCACTCAAAGTGCCCAGCTC
ATTAGACATCAGAAAACTCATTCTGGAGAAAAACCCTATGAGTGTAGTAAGTGTAAGAAA
TCTTTTGTGCACCTGTCTTCCCTGATTGAACATTGGAGAATTCACACTGGAGAAAAACCA
TATCAATGTAAGGACTGCAAAAAGACCTTTTGTCGTGTGATGCAGTTCACTCTGCACAGG
AGAATTCATACTGGTGAAAAACCCTATGAATGCAAGGAATGTGGAAAGTCCTTCAGCGCC
CATTCTTCTCTTGTTACTCATAAGAGAACACACAGTGGAGAAAAACCGTATAAATGCAAG
GAATGTGGAAAAGCCTTCAGTGCGCACTCTTCCCTTGTTACTCATAAGAGAACACACAGT
GGAGAGAAACCCTATACATGCCATGCCTGTGGGAAGGCCTTTAATACTTCCTCCACACTT
TGTCAACATAATAGAATTCATACTGGTGAAAAACCCTTTCAGTGCAGTCAATGCGGGAAG
TCCTTTAGCTGCAGCTCTCACCTTACTCGACACTGTAGAATGTGTAATGGAAAATTTAGC
AAA

ORF Protein

Cloned ORF protein sequence for pFN21AB9609 Download

>KIBB9609  241 aa
MTHLTQHQTTHTREKFHECSECGKAFSRVSALIDHQRIHSGEKPYECKECGRAFTQSAQL
IRHQKTHSGEKPYECSKCKKSFVHLSSLIEHWRIHTGEKPYQCKDCKKTFCRVMQFTLHR
RIHTGEKPYECKECGKSFSAHSSLVTHKRTHSGEKPYKCKECGKAFSAHSSLVTHKRTHS
GEKPYTCHACGKAFNTSSTLCQHNRIHTGEKPFQCSQCGKSFSCSSHLTRHCRMCNGKFS
K

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB9609 Download

>pFN21AB9609  5428 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGACTCATCTCACACAGCATCAGACTACACATAC
GAGAGAAAAGTTCCATGAATGCAGTGAATGTGGAAAGGCCTTCAGCCGTGTCTCAGCTCT
TATAGATCACCAGCGAATTCATAGTGGAGAAAAGCCGTATGAATGTAAGGAGTGTGGAAG
AGCCTTCACTCAAAGTGCCCAGCTCATTAGACATCAGAAAACTCATTCTGGAGAAAAACC
CTATGAGTGTAGTAAGTGTAAGAAATCTTTTGTGCACCTGTCTTCCCTGATTGAACATTG
GAGAATTCACACTGGAGAAAAACCATATCAATGTAAGGACTGCAAAAAGACCTTTTGTCG
TGTGATGCAGTTCACTCTGCACAGGAGAATTCATACTGGTGAAAAACCCTATGAATGCAA
GGAATGTGGAAAGTCCTTCAGCGCCCATTCTTCTCTTGTTACTCATAAGAGAACACACAG
TGGAGAAAAACCGTATAAATGCAAGGAATGTGGAAAAGCCTTCAGTGCGCACTCTTCCCT
TGTTACTCATAAGAGAACACACAGTGGAGAGAAACCCTATACATGCCATGCCTGTGGGAA
GGCCTTTAATACTTCCTCCACACTTTGTCAACATAATAGAATTCATACTGGTGAAAAACC
CTTTCAGTGCAGTCAATGCGGGAAGTCCTTTAGCTGCAGCTCTCACCTTACTCGACACTG
TAGAATGTGTAATGGAAAATTTAGCAAAGTTTAAACGAATTCGGGCTCGGTACCCGGGGA
TCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGG
AAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCG
CTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAG
TGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATA
AGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGG
GAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTC
TAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTC
ATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCA
GGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACAT
TCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAA
AGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTT
TGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAG
TTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGT
TTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCG
GTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAG
AATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTA
AGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTG
ACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTA
ACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGAC
ACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTT
ACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCA
CTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAG
CGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTA
GTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAG
ATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAAC
CGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAG
GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGC
TGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTC
AGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCC
TCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTT
CGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCG
TTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTAT
CCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAG
CCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGT
GGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGC
CAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTA
GCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAG
ATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGA
TTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATA
CAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTT
CAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGG
TTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCT
GTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGG
TAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACG
ATGCGTCCGGCGTAGAGGATCGAGATCT