RNF39 ORF clone FHC02302

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC02302

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Clone info.

Species

human

Clone Name

pFN21AB7180 Sequence (with vector) Restriction Map

Product ID

FHC02302

Flexi Clone PID

FXC02302

ORF Sequence

DNA sequence (1260 bp)
Protein sequence (420 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464177]

Gene

KIBB7180

Symbol

RNF39

Alias : FAP216, HZF, HZFW, LIRF

Description

ring finger protein 39, transcript variant 1

Original Clone ID

oc00484

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1260 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 420 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS4673.1 7.9e-142 100.0 RNF39 CCDS4674.1 1.2e-107 84.3 RNF39 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR003879 226 243 PR01407 Butyrophylin-like IPR003879 243 260 PR01407 Butyrophylin-like IPR003879 266 290 PR01407 Butyrophylin-like IPR003879 311 324 PR01407 Butyrophylin-like IPR003879 356 380 PR01407 Butyrophylin-like HMMPfam IPR018957 88 134 PF00097 Zinc finger IPR003877 282 405 PF00622 SPla/RYanodine receptor SPRY HMMSmart IPR001841 88 134 SM00184 Zinc finger IPR006574 227 280 SM00589 SPRY-associated IPR018355 281 419 SM00449 SPla/RYanodine receptor subgroup ProfileScan IPR001841 88 134 PS50089 Zinc finger IPR001870 210 420 PS50188 B302/SPRY domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_079512 420 607524 100.0 100.0 NP_739575 354 607524 84.3 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB7180 Download

>KIBB7180  1260 bp
ATGTGGTGGAGAGATTTGACGAGACTGAGACTCTGGTTGAAGAGAGAGGCAATCCCAGGA
GAGGGGCGGAAAGCGGCAAAAGTTAATGCGGGAGTCGGAGAGAAGGGCATCTACACAGCA
AGCAGCAGGGGCGGCCCGCCATCTGCGCGCTCGAAGGCGGTCACGGTGGTCGCGGAAGGG
GCGGCGTCCAGATCCTGGCTTTCCATGGATGCGCCCGAGCTGGGCCCGGGGCTGGTGGAG
CGTCTGGAGCAGCTGGCGACGTGTCCTCTGTGCGGGGGCTCCTTCGAGGACCCGGTGCTT
CTGGCGTGCGAGCACAGCTTCTGCCGCGCGTGTCTGGCCCGCCGCTGGGGGACTCCGCCG
GCGACCGGCACCGAGGCTTCCCCCACCGCCTGTCCCTGCTGCGGCCTGCCGTGTCCCCGC
CGCAGCCTGAGGTCTAATGTGCGGCTGGCGGTGGAGGTGCGAATCAGCCGCGAGCTGCGA
GAGAAGCTGGCTGAGCCTGGGGCCCGTGCGGGGAGACGCCGAGGGGGGCGCATCCCCACC
ATGGGCTGCCTGGACCTGCCCGGAGAGGATATGAGGAAGACATGGAGACGATTTGAAGTC
CCAACATCCAAGTCATCTAATTCAGAGGATGATCTCCCTGAAGATTATCCAGTGGTCAAA
AAAATGCTTCATAGACTGACAGCCGACCTGACCCTGGACCCTGGGACCGCACACCGCCGC
CTGCTCATCTCCGCCGACCGCCGCAGCGTACAACTGGCCCCACCAGGGACGCCCGCGCCC
CCTGACGGCCCCAAGCGCTTCGATCAGCTCCCAGCTGTGCTGGGTGCGCAGGGCTTCGGG
GCCGGCCGCCACTGCTGGGAGGTGGAGACTGCGGACGCCGCCTCCTGCAGAGACTCTTCT
GGGGAGGATGCGGACGACGAGGAGAGCCACTATGCAGTGGGCGCGGCCGGGGAATCAGTG
CAACGCAAGGGCTGCGTAAGGCTGTGCCCTGCGGGGGCCGTGTGGGCCGTGGAGGGCCGC
GGCGGCCGCCTGTGGGCCCTCACGGCACCCGAACCCACCCTGCTGGGCGGTGTTGAGCCC
CCGCCGCGGCGCATTCGCGTGGACCTGGACTGGGAGCGGGGCCGCGTGGCCTTCTACGAC
GGCCGCTCACTCGACCTGCTTTACGCCTTCCAGGCGCCTGGCCCCCTGGGGGAGCGCATC
TTCCCGCTGTTCTGCACCTGCGACCCTCGTGCTCCGCTCCGCATTGTACCAGCGGAAAGC

ORF Protein

Cloned ORF protein sequence for pFN21AB7180 Download

>KIBB7180  420 aa
MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG
AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP
ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT
MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR
LLISADRRSVQLAPPGTPAPPDGPKRFDQLPAVLGAQGFGAGRHCWEVETADAASCRDSS
GEDADDEESHYAVGAAGESVQRKGCVRLCPAGAVWAVEGRGGRLWALTAPEPTLLGGVEP
PPRRIRVDLDWERGRVAFYDGRSLDLLYAFQAPGPLGERIFPLFCTCDPRAPLRIVPAES

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB7180 Download

>pFN21AB7180  5965 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGTGGTGGAGAGATTTGACGAGACTGAGACTCTG
GTTGAAGAGAGAGGCAATCCCAGGAGAGGGGCGGAAAGCGGCAAAAGTTAATGCGGGAGT
CGGAGAGAAGGGCATCTACACAGCAAGCAGCAGGGGCGGCCCGCCATCTGCGCGCTCGAA
GGCGGTCACGGTGGTCGCGGAAGGGGCGGCGTCCAGATCCTGGCTTTCCATGGATGCGCC
CGAGCTGGGCCCGGGGCTGGTGGAGCGTCTGGAGCAGCTGGCGACGTGTCCTCTGTGCGG
GGGCTCCTTCGAGGACCCGGTGCTTCTGGCGTGCGAGCACAGCTTCTGCCGCGCGTGTCT
GGCCCGCCGCTGGGGGACTCCGCCGGCGACCGGCACCGAGGCTTCCCCCACCGCCTGTCC
CTGCTGCGGCCTGCCGTGTCCCCGCCGCAGCCTGAGGTCTAATGTGCGGCTGGCGGTGGA
GGTGCGAATCAGCCGCGAGCTGCGAGAGAAGCTGGCTGAGCCTGGGGCCCGTGCGGGGAG
ACGCCGAGGGGGGCGCATCCCCACCATGGGCTGCCTGGACCTGCCCGGAGAGGATATGAG
GAAGACATGGAGACGATTTGAAGTCCCAACATCCAAGTCATCTAATTCAGAGGATGATCT
CCCTGAAGATTATCCAGTGGTCAAAAAAATGCTTCATAGACTGACAGCCGACCTGACCCT
GGACCCTGGGACCGCACACCGCCGCCTGCTCATCTCCGCCGACCGCCGCAGCGTACAACT
GGCCCCACCAGGGACGCCCGCGCCCCCTGACGGCCCCAAGCGCTTCGATCAGCTCCCAGC
TGTGCTGGGTGCGCAGGGCTTCGGGGCCGGCCGCCACTGCTGGGAGGTGGAGACTGCGGA
CGCCGCCTCCTGCAGAGACTCTTCTGGGGAGGATGCGGACGACGAGGAGAGCCACTATGC
AGTGGGCGCGGCCGGGGAATCAGTGCAACGCAAGGGCTGCGTAAGGCTGTGCCCTGCGGG
GGCCGTGTGGGCCGTGGAGGGCCGCGGCGGCCGCCTGTGGGCCCTCACGGCACCCGAACC
CACCCTGCTGGGCGGTGTTGAGCCCCCGCCGCGGCGCATTCGCGTGGACCTGGACTGGGA
GCGGGGCCGCGTGGCCTTCTACGACGGCCGCTCACTCGACCTGCTTTACGCCTTCCAGGC
GCCTGGCCCCCTGGGGGAGCGCATCTTCCCGCTGTTCTGCACCTGCGACCCTCGTGCTCC
GCTCCGCATTGTACCAGCGGAAAGCGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCC
TCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAG
CTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTT
CGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGA
AAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGC
TGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAG
ATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAA
TGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATC
CGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGT
GGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCA
AATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGG
AAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGC
CTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTG
GGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTT
CGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTA
TTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAAT
GACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGA
GAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACA
ACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACT
CGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACC
ACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACT
CTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTT
CTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGT
GGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTT
ATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATA
GGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGG
TATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAA
AGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGG
CGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGA
GGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCG
TGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGG
GAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTC
GCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCG
GTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCA
CTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGT
GGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAG
TTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCG
GTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATC
CTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTT
TGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAG
GAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAG
TGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTA
AAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTC
TGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAA
ATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATG
CGTCCGGCGTAGAGGATCGAGATCT