FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2548, 940 aa 1>>>pF1KE2548 940 - 940 aa - 940 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.3930+/-0.000981; mu= 8.6865+/- 0.060 mean_var=195.9906+/-38.417, 0's: 0 Z-trim(112.2): 19 B-trim: 53 in 1/51 Lambda= 0.091613 statistics sampled from 12997 (13004) to 12997 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.399), width: 16 Scan time: 4.450 The best scores are: opt bits E(32554) CCDS46763.1 XPC gene_id:7508|Hs108|chr3 ( 940) 6278 842.9 0 >>CCDS46763.1 XPC gene_id:7508|Hs108|chr3 (940 aa) initn: 6310 init1: 6278 opt: 6278 Z-score: 4494.3 bits: 842.9 E(32554): 0 Smith-Waterman score: 6278; 99.9% identity (100.0% similar) in 940 aa overlap (1-940:1-940) 10 20 30 40 50 60 pF1KE2 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE2 EPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 EPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLH 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE2 RVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 RVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKK 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE2 EKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 EKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARIL 850 860 870 880 890 900 910 920 930 940 pF1KE2 AASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEKL ::::::::::::::::::::::::::::::::::::::.: CCDS46 AASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEQL 910 920 930 940 940 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:54:53 2016 done: Tue Nov 8 03:54:53 2016 Total Scan time: 4.450 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]