FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2712, 180 aa
  1>>>pF1KE2712     180 - 180 aa - 180 aa
Library: /omim/omim.rfq.tfa
  63781504 residues in 89704 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5336+/-0.000323; mu= 6.3655+/- 0.020
 mean_var=315.6500+/-65.688, 0's: 0 Z-trim(125.1): 16  B-trim: 823 in 1/59
 Lambda= 0.072189
 statistics sampled from 49300 (49325) to 49300 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.55), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(89704)
NP_001318 (OMIM: 300156) cancer/testis antigen 1 [ ( 180) 1261 143.3 2.2e-34
NP_640343 (OMIM: 300657) cancer/testis antigen 1 [ ( 180) 1261 143.3 2.2e-34
NP_758965 (OMIM: 300396) cancer/testis antigen 2 i ( 180) 1084 124.8 7.6e-29
NP_066274 (OMIM: 300396) cancer/testis antigen 2 i ( 210)  789 94.2 1.5e-19
NP_006005 (OMIM: 300060,301006) EKC/KEOPS complex  ( 143)  282 41.2 0.00094


>>NP_001318 (OMIM: 300156) cancer/testis antigen 1 [Homo  (180 aa)
 initn: 1261 init1: 1261 opt: 1261  Z-score: 738.8  bits: 143.3 E(89704): 2.2e-34
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
              130       140       150       160       170       180

>>NP_640343 (OMIM: 300657) cancer/testis antigen 1 [Homo  (180 aa)
 initn: 1261 init1: 1261 opt: 1261  Z-score: 738.8  bits: 143.3 E(89704): 2.2e-34
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_640 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_640 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_640 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
              130       140       150       160       170       180

>>NP_758965 (OMIM: 300396) cancer/testis antigen 2 isofo  (180 aa)
 initn: 1084 init1: 1084 opt: 1084  Z-score: 639.2  bits: 124.8 E(89704): 7.6e-29
Smith-Waterman score: 1084; 85.6% identity (94.4% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
NP_758 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
       ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: ::
NP_758 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
       ..::.::::::.: ::::::::::::::::::::::::::::::::::::::: ::::::
NP_758 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR
              130       140       150       160       170       180

>>NP_066274 (OMIM: 300396) cancer/testis antigen 2 isofo  (210 aa)
 initn: 789 init1: 789 opt: 789  Z-score: 472.5  bits: 94.2 E(89704): 1.5e-19
Smith-Waterman score: 789; 78.0% identity (90.8% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
NP_066 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
       ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: ::
NP_066 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
       ..::.::::::.: . .   :                                       
NP_066 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRP
              130       140       150       160       170       180

>>NP_006005 (OMIM: 300060,301006) EKC/KEOPS complex subu  (143 aa)
 initn: 324 init1: 135 opt: 282  Z-score: 188.8  bits: 41.2 E(89704): 0.00094
Smith-Waterman score: 288; 42.4% identity (63.9% similar) in 144 aa overlap (25-168:7-139)

               10        20        30        40        50        60
pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
                               :. ::  :: :.    ::.. :: :.  :..:.:::
NP_006                   MRDADADAGGGADGGDGR----GGHSCRG-GVDTAAAPAGGA
                                 10            20         30       

               70        80        90       100       110       120
pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
       :  :  . . : ..    .::: . :   : :..:: ::.:::.:. ::: :: :     
NP_006 P--PAHAPGPGRDAAS--AARGSRMRPHIFTLSVPFPTPLEAEIAHGSLAPDAEPHQR--
          40        50          60        70        80        90   

              130       140       150       160       170       180
pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
       :. :..:::: ::..:  : : : :..:. . :.::::..   : : :            
NP_006 VVGKDLTVSGRILVVRWKAEDCRLLRISVINFLDQLSLVVRTMQRFGPPVSR        
             100       110       120       130       140           




180 residues in 1 query   sequences
63781504 residues in 89704 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Jan  5 10:03:32 2018 done: Fri Jan  5 10:03:33 2018
 Total Scan time:  3.090 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]