FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2712, 180 aa
  1>>>pF1KE2712     180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2779+/-0.000808; mu= 8.5839+/- 0.049
 mean_var=302.4620+/-63.049, 0's: 0 Z-trim(117.7): 20  B-trim: 150 in 1/53
 Lambda= 0.073746
 statistics sampled from 18429 (18446) to 18429 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.567), width:  16
 Scan time:  1.090

The best scores are:                                      opt bits E(32554)
CCDS44025.1 CTAG1A gene_id:246100|Hs108|chrX       ( 180) 1261 145.9 1.3e-35
CCDS14758.1 CTAG1B gene_id:1485|Hs108|chrX         ( 180) 1261 145.9 1.3e-35
CCDS35455.1 CTAG2 gene_id:30848|Hs108|chrX         ( 180) 1084 127.0 6.1e-30
CCDS14759.1 CTAG2 gene_id:30848|Hs108|chrX         ( 210)  789 95.7 1.8e-20


>>CCDS44025.1 CTAG1A gene_id:246100|Hs108|chrX            (180 aa)
 initn: 1261 init1: 1261 opt: 1261  Z-score: 752.8  bits: 145.9 E(32554): 1.3e-35
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
              130       140       150       160       170       180

>>CCDS14758.1 CTAG1B gene_id:1485|Hs108|chrX              (180 aa)
 initn: 1261 init1: 1261 opt: 1261  Z-score: 752.8  bits: 145.9 E(32554): 1.3e-35
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
              130       140       150       160       170       180

>>CCDS35455.1 CTAG2 gene_id:30848|Hs108|chrX              (180 aa)
 initn: 1084 init1: 1084 opt: 1084  Z-score: 651.1  bits: 127.0 E(32554): 6.1e-30
Smith-Waterman score: 1084; 85.6% identity (94.4% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS35 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
       ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: ::
CCDS35 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
       ..::.::::::.: ::::::::::::::::::::::::::::::::::::::: ::::::
CCDS35 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR
              130       140       150       160       170       180

>>CCDS14759.1 CTAG2 gene_id:30848|Hs108|chrX              (210 aa)
 initn: 789 init1: 789 opt: 789  Z-score: 480.8  bits: 95.7 E(32554): 1.8e-20
Smith-Waterman score: 789; 78.0% identity (90.8% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS14 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
       ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: ::
CCDS14 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
       ..::.::::::.: . .   :                                       
CCDS14 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRP
              130       140       150       160       170       180




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Jan  5 10:03:32 2018 done: Fri Jan  5 10:03:32 2018
 Total Scan time:  1.090 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]