GENSCAN 1.0	Date run:  6-Nov-116	Time: 05:08:53

Sequence gi568815592f:41950542_42177241 : 226700 bp : 48.37% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   2044   2125   82  0  1  101  115    22 0.779   7.33
 1.02 Term +  60433  60512   80  2  2   95   41    74 0.259   1.33
 1.03 PlyA +  61880  61885    6                               1.05

 2.00 Prom +  68556  68595   40                              -2.86
 2.01 Init +  75328  75348   21  0  0   74  103    10 0.008   0.80
 2.02 Intr +  82226  82354  129  1  0   52   75    49 0.045   0.89
 2.03 Term +  93554  93916  363  1  0   71   43   188 0.368   7.17
 2.04 PlyA +  94884  94889    6                               1.05

 3.00 Prom +  96449  96488   40                              -3.56
 3.01 Init + 100001 100045   45  1  0   86  103    69 0.925   8.60
 3.02 Intr + 100816 100972  157  0  1   63   68   160 0.999  11.08
 3.03 Intr + 104990 105088   99  0  0   71   92   104 0.995   9.18
 3.04 Intr + 105411 105473   63  1  0  106   99    53 0.992   6.89
 3.05 Intr + 106848 106972  125  1  2   52  117   118 0.932  11.40
 3.06 Intr + 115771 115918  148  0  1   87   47   152 0.999  10.81
 3.07 Intr + 117924 118066  143  1  2   76   64   142 0.937  10.67
 3.08 Intr + 126559 126698  140  0  2   48   81   230 0.415  17.56
 3.09 Intr + 142372 142492  121  1  1   57   60    27 0.212  -2.70
 3.10 Term + 142659 142736   78  2  0  118   48    67 0.644   3.46
 3.11 PlyA + 143294 143299    6                               1.05

 4.08 PlyA - 144375 144370    6                               1.05
 4.07 Term - 153337 153220  118  0  1  135   52   140 0.986  13.11
 4.06 Intr - 157042 153922 3121  2  1  145   99  1566 0.796 150.78
 4.05 Intr - 159750 159675   76  0  1  122  111    62 0.907  10.99
 4.04 Intr - 167757 167595  163  2  1   12   99    39 0.038  -2.62
 4.03 Intr - 172471 172362  110  1  2   71   81    76 0.194   4.28
 4.02 Intr - 178237 178131  107  2  2   88  105    99 0.444  11.53
 4.01 Init - 191903 191759  145  2  1   80  109   212 0.801  22.78
 4.00 Prom - 194854 194815   40                             -10.15

 5.00 Prom + 196352 196391   40                              -9.65
 5.01 Init + 196759 196761    3  0  0   37  115     0 0.292  -2.40
 5.02 Intr + 199121 199272  152  1  2  112   35   116 0.660   7.66
 5.03 Intr + 206144 206259  116  2  2   81   58    43 0.416   0.69
 5.04 Intr + 207839 207981  143  0  2  119   80    44 0.484   6.77
 5.05 Term + 212379 212708  330  2  0  129   47   373 0.998  31.96
 5.06 PlyA + 219079 219084    6                               1.05

 6.00 Prom + 220954 220993   40                              -4.96
 6.01 Init + 223073 223273  201  1  0   69  105   399 0.863  38.58

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:41950542_42177241|GENSCAN_predicted_peptide_1|53_aa
MDSDSQKKPSSKVTVSALGSEAGALSNETLQEFIQAVNRSFHKDPMKAFKSDS

>gi568815592f:41950542_42177241|GENSCAN_predicted_CDS_1|162_bp
atggactctgatagtcagaagaagccctcaagcaaagtgacagtgtcagcacttggaagt
gaggctggtgcactctcgaatgaaacacttcaggagttcatccaagcagtcaatcggtca
tttcacaaggatccaatgaaggctttcaaaagtgattcttga

>gi568815592f:41950542_42177241|GENSCAN_predicted_peptide_2|170_aa
MVPGVSMKPTHFHDVQTGRGNSQLPSSSCSSLFRAPGTLSISKPGSAAFLGKDSQEGERE
DVEEIPDLGTGVCRRGGGLHVLAGAWTRQKSTFYGGFAGSKAVLWAPVCKQLVMGWEQRL
PETSQRLKNPATLFIHPIQSPQGDTRGNSSTWWTIRDYHGPGSMGEQRMT

>gi568815592f:41950542_42177241|GENSCAN_predicted_CDS_2|513_bp
atggtacccggtgtatccatgaaacctacccatttccacgatgtgcagactggcagaggt
aacagccagctgccctcatcttcctgtagttctctctttcgagcccctggcactttgtcc
atttccaagcctggttctgcagctttcctaggaaaggacagtcaggaaggggaaagagaa
gatgtggaagaaatccctgacctggggacgggtgtatgccgcagaggcggaggcctgcac
gttctggccggagcctggacaagacagaagagcaccttttacgggggctttgctggatca
aaagcagttctctgggccccggtgtgtaaacagctggtgatgggctgggagcagaggctc
cctgaaaccagtcagcgcctgaagaacccggcaacactcttcattcacccaatccagtca
ccccaaggtgacacacggggcaacagctccacctggtggacgatcagggactaccacggg
ccagggagtatgggagagcaaagaatgacatag

>gi568815592f:41950542_42177241|GENSCAN_predicted_peptide_3|372_aa
MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
PKIRRKKIMKSLEVCPPNLLSTPMLKYLSPPSPKSTPKQSSHWDSFRDVNEKISPDLPDI
TKYPLGSKIGPG

>gi568815592f:41950542_42177241|GENSCAN_predicted_CDS_3|1119_bp
atggccgacgcggcggccacagctggggccggtggctccggaacgagatcgggaagtaaa
cagtccactaaccctgccgataactatcatctggcccggaggagaaccctgcaggtggtt
gtgagctccttgctgacagaggcagggtttgagagtgccgagaaagcatccgtggaaacg
ctgacagagatgctgcagagctacatttcagaaattgggagaagtgccaagtcttactgt
gagcacacagccaggacccagcccacactgtccgatatcgtggtcacacttgttgagatg
ggtttcaatgtggacactctccctgcttatgcaaaacggtctcagaggatggtcatcact
gctcctccggtgaccaatcagccagtgacccccaaggccctcactgcagggcagaaccga
ccccacccgccgcacatccccagccattttcctgagttccctgatccccacacctacatc
aaaactccgacgtaccgtgagcccgtgtcagactaccaggtcctgcgggagaaggctgca
tcccagaggcgcgatgtggagcgggcacttacccgtttcatggccaagacaggcgagact
cagagtcttttcaaagatgacgtcagcacatttccattgattgctgccagacctttcacc
atcccctacctgacagctcttcttccgtctgaactggagatgcaacaaatggaagagaca
gattcctcggagcaggatgaacagacagacacagagaaccttgctcttcatatcagcatg
gaggattctggagccgagaaggagaacacctctgtcctgcagcagaacccctccttgtcg
ggtagccggaatggggaggagaacatcatcgataacccttatctgcggccggtgaagaag
cccaagatccgcaggaagaagatcatgaaatccttggaggtttgccctccaaaccttctc
tccactcccatgctcaagtatctctcaccaccttcaccaaagtccactcccaagcagtca
tcacactgggactccttcagggatgtcaatgaaaaaatatctccagatcttccagatatc
accaaatatcctctgggaagcaaaattggccctggataa

>gi568815592f:41950542_42177241|GENSCAN_predicted_peptide_4|1279_aa
MKKKQTVQGTFSKLFGKKHTTTPSTSLYATNPPWIFTQEAPEEGTGGFDGIYYGDNRFNT
VSESGTATLKARPRVRPLLTFLPLSESSHRQGDAYEELKIKCQCGKYGKTGPTGPQGCPG
RTLRTLPPTYSCLYPAAPLASLESEDNLEAIQLSVPTPCHRGVTLSVQVTAHTTQNAQEN
HGLAVPTPSVPDDFADKEVTGTSSLVNGNLRLYSSVGDLRPGQYGQDLLIPPPPPGPAPG
PPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSIP
TPPDFIPPAPPLAFLAPPPPPVPAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQA
EATRASPPRSPAEPKGSALGPNPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEG
ATKKAPSRLPLPPSFHIRPASQVYPDRAPEPDCPGELKATAPASPRLGQSQSQADERAGT
PPPAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAGFTKTPKSSSPALKPKPNPPS
PENTASSAPVDWRDPSQMEKLRNELAAYLCGSRREDRFLSHRPGPTVAPQSKEGKKGPRL
PEKETLLSLPAKDTPPGVPEKSLGGSSLTETEAAPSLTLPSVDYIPQDSPTPSVRQIRNE
LEARLSSAAEKEAKPSIGSLPPKPRLEGGRICENGADDDKLSKPVAKNLPPQSTTLLPTT
SLQPKAMLGPAIPPKATPEPAIPPKATLWPATPPKATLGPATPLKATSGPTTPLKATSGP
AIASTATTLPTTTSQLMAEKDSGPAGQPEKPASQEVSTPSQARGEGSPSEATRLPTQGAR
SSAAFPPKTSPGGGEVPCLYKPHCHQSSLSREVAVVMPTLARGGAAGPGEPVEVKEPPGL
PAKPPASAQPTDELLRHPVTGEVVERGSPMALLLAARQRAQKGRSVGAALGRSSLPGSLR
DHSHQAEASSDSIFHSQGTPNSFTVVPKLPKEAEKDSPLTTEIPNKWGPRLGRDAEGTEL
SRRHNWTKPEPQAPVAWERVAPSNLPQGHPLPKSFSSPPSPSNKREEEEEEFNFEVIPPP
PEFSNDPEPPAPALQYLGRQSSPPRNNYSDLRQLPNAGPGAPPALGFSRFPAGARYAGAG
GLERFSGGGRSLIKKRLYVGEPHRGPGLPHGGTGRSLSSPNCFGPQPGGPEMRRVNSAGR
APPGGLHAPRLSLEGAARGAAEAKHKAPGSADYGFAPAAGRSPYTTTRYGSPINTFTVRP
GTRHPISYVCSGAHRKATS

>gi568815592f:41950542_42177241|GENSCAN_predicted_CDS_4|3840_bp
atgaaaaagaagcagacggtgcagggcaccttcagcaaactcttcgggaagaagcacacc
acgacccccagcacctccctctacgccaccaatccgccctggatcttcacccaggaggcc
ccggaggaggggaccgggggcttcgatggcatctattatggagacaatcggtttaacaca
gtgagcgagtcaggaacagccacgctgaaagctcggccaagagtccggcccctgctgacc
ttccttccgctgtctgaatcaagccatcgccagggtgatgcatatgaggaattaaaaatt
aaatgccagtgtggcaagtatgggaaaactggcccaacaggtccccaggggtgccctggg
cgaactttgagaactctccctcccacctactcctgcctctaccctgctgcccctttggca
tctctggagtcagaggacaacctcgaggcaatacagttgtctgtcccaacaccctgtcat
cgaggggtgaccctgagtgtccaggtcactgcccacacgacgcagaatgcccaggaaaac
catgggctggctgtgcccaccccctcggttccagatgattttgcagacaaagaagtgaca
ggtaccagctcactagtcaatggcaacctccgactgtacagctctgtgggtgacctgagg
cctggacaatatggccaggatctactcatccccccacctcccccaggcccagccccaggg
ccccctcaggacatttcagaacctccaggggggtcgccactgccatctccaccttccaca
gcacccccaccacctcccctgctgctggaacccccacccccgcccagcatggccccacct
ccacccccagtattggaggccctatccccaccacacactctttcctccccatccataccc
acccctcctgacttcattccccctgccccacccttggcctttctagcccccccaccgcct
cctgtgccagccccagcacccccagctccagcatctcctcacacagtggggactcgtctc
tttccccctgggggtgtcaccaagtggaaatcagatgtagcactgaatggcaggcaggca
gaggccaccagagccagccccccgagaagccctgctgagccaaaggggagcgccctggga
cctaacccagagccccatctcaccttcccccgttctttcaaagtgcctcccccaacccca
gtcaggacttcgtccatcccagttcaggaagcacaagaggctccccgaaaggaagagggg
gccaccaagaaggctcccagccgactcccactgcctcccagcttccacatccgccccgcc
tcccaggtctacccagacagggcccccgagccagactgccctggggagctcaaggccaca
gcaccagccagcccaaggcttggccagtcccagtcccaagcagatgaacgagctgggact
ccgcctccagcccctcccctgccccctcctgcaccccccctccctcccccagcaccccca
cttcccccagctgcacctcctttgccctgtgctcagaaggcagcccatccacctgctggg
tttacaaaaacccctaaatccagctctcctgctctcaaacccaaacccaacccccccagc
ccagagaacacagcgtcttcagcacctgtggactggagggaccccagccagatggaaaag
ctgcggaacgagctggcagcctatctctgtggctccaggagagaggaccgattcctcagt
cacaggccaggcccaacagtggcccctcagagcaaggagggcaagaagggcccccgcctg
cctgagaaggagactctcctgagcctgccagcaaaggacactcccccaggtgttcctgaa
aagagtcttggcggcagcagcctgacagagacagaggctgcccccagcctgaccctgccc
tctgtggactacattccccaagactctccaactcccagtgtgcggcagatccggaatgag
ctggaggcccggctctcctcagcagcagagaaggaggctaagcccagcataggatctctg
ccccctaagcctcggctagaagggggaagaatttgtgaaaacggggctgatgatgacaaa
ctctccaagcctgtggccaagaatctgccacctcaatccaccaccctgctgccaactaca
tcactccagcccaaggctatgttgggaccagccataccacccaaggccacacctgagcca
gccataccacccaaggctacactttggccagccacaccacccaaggccacacttgggcca
gccacaccactcaaggccacatctgggccaaccacaccactcaaggccacatctggccct
gccatagcatctacagccacaactctgcccaccaccacatcccaactgatggcagagaag
gactcaggcccagctggccagccagagaagccagcatctcaagaagtttccactccctcc
caggcaaggggagaggggtccccctcagaggccactaggctgcccacacagggagcccgc
tcatctgcagccttcccaccaaagacatctcctggtggaggagaggtgccatgtctctac
aagccccactgccaccagagcagcctcagccgtgaggttgctgtggtgatgcccaccctg
gccagaggaggggctgcagggccaggggagcccgtggaggtgaaggagcccccagggctg
ccagccaagcctcctgcctcggcccagcccactgatgaactcctcaggcacccggtgact
ggggaggtggtggagcggggctcgccgatggccctgctcctggcggccaggcagagggct
cagaagggaaggtctgtaggggctgccctgggtcggtcctctctgccaggaagtctccgt
gaccacagccaccaagccgaggccagctctgacagcatcttccacagccagggcacgccc
aactccttcactgtggtgcccaagttacccaaggaggctgagaaggactccccgctgacg
accgaaatacccaataagtgggggccgcggctgggaagagacgcagagggcacagagctg
agccgcaggcacaactggacaaagccagagccccaggcccctgtggcctgggaaagagta
gctccctccaacctcccccagggccacccgctgcccaagtccttctcctccccaccttct
ccttcgaacaagagggaggaggaggaggaggagttcaacttcgaggtcatcccaccgccg
ccagagttcagcaatgaccctgagcccccggccccggccctccagtatctgggccgccag
agctcccctccccggaacaactactcagacttgaggcagctcccgaacgctggccccggg
gcgcccccggctctcggcttctcgcgctttcccgcgggcgcgcgctacgccggggctggg
ggcctggagcgcttctcgggagggggccgctcgctcataaagaagcgcctgtacgtcggg
gagccgcaccgaggcccagggctaccccacggtggcaccggccgcagcctgagctctccc
aactgcttcgggccgcagcccggaggccccgagatgcggcgcgtgaactcggcgggtcgc
gcgccccccggaggcctgcacgcgccgaggctgtccctggagggcgccgcccggggcgcc
gcggaggccaagcacaaagcgcccggcagcgccgactacggcttcgccccagctgccggc
aggtctccctacaccaccacccgctatggaagccccatcaacacgttcaccgtgaggcct
gggacccgccatcccatctcctatgtctgctcaggggcccatcggaaagccacctcctga

>gi568815592f:41950542_42177241|GENSCAN_predicted_peptide_5|247_aa
MVAKAPYPALGMEMLNREQQKHNRDHERLQKSHVNSTKKLKKENSTEIRETGTHGTPPQA
GELDSLIIPILQMRPLKLKEAQPLAQGRLTYCLCPSFCEGFIPGCSGDPGCPLPLLPPES
CMLQQQHSKHSRGVDPGQDSQKPSVPSHGPKTPSCKGVKAPHSSRPRAWKQDLEQSLAAA
YVPVVVDSKGQNPDKLRFNFYTSQYSNSLNPFYTLQKPTCGYLYRRDTDHTRKRFDVPPA
NLVLWRS

>gi568815592f:41950542_42177241|GENSCAN_predicted_CDS_5|744_bp
atggtagccaaagctccctaccctgctttgggcatggagatgctaaacagagaacagcaa
aaacacaacagagaccatgagaggctgcagaagagccatgtcaattcaacaaagaaactc
aagaaggaaaattccactgagatccgggagacaggcactcatggcaccccaccacaagct
ggtgaattagatagccttattatccccattttgcagatgaggcccctgaagctcaaagag
gctcagccacttgcccaaggtcgcctgacctactgtctgtgtcccagtttttgtgagggc
ttcatccctggatgttccggggaccctggctgtcccctacccctgctgcccccagagtcc
tgtatgttgcagcagcagcattctaaacacagccgaggtgtggacccagggcaggactca
cagaaaccctctgtacccagtcatgggccaaagacaccgtcatgcaagggggtgaaggct
ccacactcgtcccggccccgggcgtggaagcaggacctcgagcagtctctggcagcagcc
tatgtgccggtcgttgtggactctaaggggcagaatccggacaagctcaggttcaatttc
tacacctcccagtactccaactccctgaaccccttctacactttgcagaagcctacctgt
ggctacctgtaccgccgggacactgaccacacccgcaagcgctttgatgtgcctcctgcc
aacttggtcttgtggcgctcctag

>gi568815592f:41950542_42177241|GENSCAN_predicted_peptide_6|67_aa
MGNVMEGKSVEELSSTECHQWYKKFMTECPSGQLTLYEFRQFFGLKNLSPSASQYVEQMF
ETFDFNK

>gi568815592f:41950542_42177241|GENSCAN_predicted_CDS_6|201_bp
atgggcaacgtgatggagggaaagtcagtggaggagctgagcagcaccgagtgccaccag
tggtacaagaagttcatgactgagtgcccctctggccaactcaccctctatgagttccgc
cagttcttcggcctcaagaacctgagcccgtcggccagccagtacgtggaacagatgttt
gagacttttgacttcaacaag