GENSCAN 1.0	Date run: 20-Jan-117	Time: 09:30:03

Sequence gi568815595r:9402214_9652679 : 250466 bp : 43.42% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  26726  26796   71  1  2   79   89    28 0.618   2.56
 1.02 Intr +  31632  31737  106  0  1   65   68    55 0.658   1.42
 1.03 Intr +  32121  32272  152  2  2  108  110    97 0.897  12.86
 1.04 Intr +  32611  32669   59  1  2   88   99     5 0.936   0.13
 1.05 Intr +  33515  33693  179  0  2   65   91   109 0.627   8.54
 1.06 Intr +  34637  34675   39  1  0   45  116    70 0.938   3.92
 1.07 Intr +  38243  38485  243  1  0  107  115   142 0.999  16.49
 1.08 Intr +  39380  39528  149  1  2   72   69   120 0.634   7.53
 1.09 Intr +  39915  40032  118  0  1   39   94    89 0.974   5.07
 1.10 Intr +  41095  41204  110  0  2   30   99   129 0.948   7.28
 1.11 Intr +  42940  43087  148  1  1   28   74   139 0.839   6.74
 1.12 Intr +  43444  43527   84  0  0   63   96   111 0.998   9.42
 1.13 Intr +  44837  45094  258  1  0   73   78   171 0.996  12.26
 1.14 Intr +  45473  45793  321  1  0   62  115   216 0.999  17.76
 1.15 Intr +  46175  46417  243  1  0   80   95    70 0.879   4.59
 1.16 Intr +  51526  51655  130  0  1   85   98    14 0.350   2.37
 1.17 Intr +  62320  62459  140  2  2   97   45    81 0.572   4.88
 1.18 Intr +  68246  68716  471  1  0  100  106   149 0.938  11.18
 1.19 Intr +  71023  71324  302  0  2  128  103    23 0.384   3.33
 1.20 Intr +  72236  72369  134  2  2  104   99   107 0.453  13.69
 1.21 Intr +  92063  92155   93  0  0   84   67    69 0.491   4.34
 1.22 Term +  94866  94909   44  1  2  110   39    40 0.034  -1.38
 1.23 PlyA +  96029  96034    6                               1.05

 2.06 PlyA -  96173  96168    6                               1.05
 2.05 Term -  98367  98348   20  1  2   95   46    17 0.291  -3.32
 2.04 Intr -  99425  99306  120  0  0   87   71    90 0.588   7.67
 2.03 Intr - 103990 103709  282  2  0   60   -6   513 0.464  36.49
 2.02 Intr - 150634 150061  574  1  1  125   91   904 0.345  86.71
 2.01 Init - 181560 181393  168  0  0   66   77    80 0.345   4.23
 2.00 Prom - 184506 184467   40                              -4.96

 3.00 Prom + 184962 185001   40                              -7.96
 3.01 Sngl + 200099 200473  375  1  0   49   48   238 0.641  12.05
 3.02 PlyA + 200830 200835    6                               1.05

 4.00 Prom + 218586 218625   40                              -3.66
 4.01 Init + 247371 247529  159  2  0   92  100   315 0.936  30.92

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 160168 160149   20  2  2  151   45    30 0.829   3.48


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:9402214_9652679|GENSCAN_predicted_peptide_1|1197_aa
MSIAIPLGVTTSDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYAT
IIPRSDLNGLPSPVEERCGDSPNSEGETVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRL
HRRKQDNISGGDSSATESWDEELSPSTVLYTATQHTPTSITLTVRRTKPKKRKKSPEKGR
AAPKTKKIKAFREGSRKSLRMKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFTNQYSA
DVQNALEQHLHSSKEFVGKPTILDTINKTELACNNTVIGSQMQLQLGRVTRVQKHRKILR
AARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDA
RFIRRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEYSNCLPTIGAETRRR
KARRKELEMEQQNEASEENNDQQSQEVPEKVTVSSDHEEVDNPEEKPEEEKEEVIDDQEN
LAHSRRTREDRKVEAIMHAFENLEKRKKRRDQPLEQSNSDVEITTTTSETPVGEETKTEA
PESEVSNSVSNVTIPSTPQSVGVNTRRSSQAGDIAAEKLVPKPPPAKPSRPRPKSRISRY
RTSSAQRLKRQKQANAQQAELSQAALEEGGSNSLVTPTEAGSLDSSGENRPLTGSDPTVV
SITGSHVNRAASKYPKTKKYLVTEWLNDKAEKQECPVECPLRITTDPTVLATTLNMLPGL
IHSPLICTTPKHYIRFGSPFIPERRRRPLLPDGTFSSCKKRWIKQALEEGMTQTSSVPQE
TRTQHLYQSNENSSSSSICKDNAGSKSPQLATPGSSHPGEEECRNGYSLMFSPVTSLTTA
SRCNTPLQFELCHRKDLDLAKVGYLDSNTNSCADRPSLLNSGHSDLAPHPSLGPTSETGF
PSRSGDGHQTLVRNSDQAFRTEFNLMYAYSPLNAMPRADGLYRGSPLVGDRKPLHLDGGY
CSPAEGFSSRYEHGLMKDLSRGSLSPGGERACEGVPSAPQNPPQRKKVSLLEYRKRKQEA
KENSAGGGGDSAQSKSKSAGAGQGSSNSVSDTGAHGVQGSSARTPSSPHKKFSPSHSSMS
HLEAVSPSDSRGTSSSHCRPQENISSRWMVPTSVERLREGGSIPKVLRSSVRVAQKGEPS
PTWESNITEKDSVNNLVSCFTEKMDAIGQERTELLPCPPPRKRPRPPPTLPTSPKAI

>gi568815595r:9402214_9652679|GENSCAN_predicted_CDS_1|3594_bp
atgagcattgcaatccctctgggagtcaccacatcagatacatcctactcagatatggct
gctggatcagaccctgaatctgtggaggctagtccagcagttaatgagaagagcgtgtat
tccactcataattatgggaccactcagaggcatgggtgtcgaggactgccttatgctacg
atcatccctcgttctgacctgaatggcctgccgtcgcctgtagaggaacgctgtggagac
agcccgaactctgaaggagaaactgtacctacctggtgtccttgtggtctttctcaggat
ggcttccttctcaactgtgacaagtgcaggggaatgagcagggggaaggttattagactt
catcggcggaagcaggacaacatatcaggtggggatagcagtgcaacagaaagctgggat
gaggagctttctccttccactgtgttgtatacagcaacacagcacacacctacaagcatc
accttaactgttagaagaaccaaacccaagaagcggaaaaagagtccagaaaagggtcgt
gcagcaccaaagacgaagaaaatcaaggcatttcgagagggatcccggaagtccttgcgg
atgaagaattctccctctgaagcacagaatttagatgagaatacaactgagggctgggaa
aatcggataagactatggactgaccagtatgaagaagctttcactaatcagtacagtgca
gatgtacagaacgcgcttgaacaacacctacattctagcaaggaatttgtgggcaaacct
actattttagacactattaataagactgaattggcctgtaataacacagttattggttcc
caaatgcagttacagctgggaagagtcactcgtgttcaaaagcaccggaagatcctgagg
gctgcaagagatttggctttggacactcttataatagagtatcgtgggaaagtcatgtta
cgacagcaatttgaggtcaatgggcatttcttcaaaaaaccatacccctttgtgctcttc
tactcaaaattcaatggtgtagagatgtgtgtggatgcccgtactttcggtaatgatgct
cggttcatcagaagatcatgtacaccaaatgcagaggtgcgacacatgattgcagatggg
atgattcacctgtgcatctatgctgtgtctgccatcaccaaggatgctgaggtcaccata
gcatttgattatgagtatagtaactgcctacccaccattggagcagagactagacgtaga
aaagcacgacggaaagagctagagatggagcagcagaatgaggcttcagaggagaataat
gaccagcaatcacaagaagttccagaaaaagtaactgtatccagtgatcatgaggaagta
gacaatccagaagaaaaaccagaagaagagaaagaagaggttatagatgaccaggagaac
ctagctcatagcaggaggaccagggaagatagaaaggtagaagccatcatgcatgctttt
gaaaacttagagaaaagaaagaagcggcgggatcagcccttggaacagagcaactctgat
gtagagattactacaaccacctcagagactcctgttggtgaagagacaaaaactgaagcc
cctgaatctgaagttagcaactctgtttcaaatgttaccatcccaagcaccccacagagt
gttggtgtgaatacccggaggtcttcccaagcaggggatattgctgcagaaaaactagtc
cccaagccacctccagcaaagccttctaggccccggccgaagagtcgaatttctcggtac
aggaccagttcagcccaaagactaaagcgtcagaagcaggccaatgcacagcaggcagaa
ttgtcacaagctgccttggaagagggaggaagtaacagtttagtaactcctactgaagct
ggaagtctagacagttcaggagaaaacaggccattaacagggtctgacccaactgtggtg
tcaattactggatcccatgtcaaccgtgctgcatctaaataccccaaaaccaaaaagtat
ctagttacagaatggttgaatgacaaagcagagaagcaagagtgccctgttgagtgccct
ttacgtatcacaacggatccaactgtactggcaacgaccctaaacatgttaccaggtctt
atccattccccgttaatttgcaccacccccaaacactacattcgctttggctcacccttt
atccctgagagacgtcgaaggccccttctgcctgatggcacattcagctcctgtaagaag
cgctggataaaacaagccttagaagaagggatgactcaaacatcatctgtaccccaagag
actagaactcagcacctataccaaagcaatgagaatagtagctcttctagtatctgcaaa
gacaatgcaggctcaaagagtccccagctggccacacctggctcatctcacccaggagaa
gaggagtgtcgaaatggatacagcctcatgttttcaccagtcacatctcttactactgct
agtcgctgcaacactcctctacagtttgagctttgtcaccgaaaagacctggatttggca
aaagtaggataccttgactccaacactaacagctgtgctgatagaccttccctactcaac
tcaggtcattctgacctggctcctcatccctccctcggacccacttctgagactggtttc
ccaagcagaagtggagatggacatcagaccctcgtgagaaactcagaccaggcatttcgg
acagagttcaacttgatgtatgcctactcccctttgaatgctatgcctcgagcagatgga
ctgtatcgaggatctcctctagtgggggataggaagcctttacatttggatgggggatat
tgttcccctgcagaaggattttccagcagatatgaacatggcttaatgaaagacctctct
cgtggatccttgtcacctggtggtgaaagggcctgtgaaggagtcccatctgccccccag
aacccaccacagaggaaaaaagtatccctgctggagtaccgaaaacggaaacaagaagct
aaggaaaattctgctggtgggggaggtgactctgcacagagcaaaagcaagtctgcagga
gctgggcaaggcagcagtaactccgtttccgacactggtgcccatggtgtgcagggatcc
tcagcccgaactccatcttcccctcacaaaaaattctccccatctcattcctctatgtcc
catttggaggcggtaagcccatcagattccagaggcacttcttcatctcactgcagacct
caagagaatatcagcagtaggtggatggttcccacatcagtagaacgactccgagaagga
gggagcatccccaaggtcctccgaagcagcgtgagggtggcccaaaagggagagccctct
cccacatgggagagtaacatcacagagaaagactcagtaaacaaccttgtttcctgcttc
actgagaagatggatgctatcgggcaagaacgcactgaacttttgccctgccctccaccc
cgaaagagaccaagacctcctcctacgctgcccacgtcaccaaaagccatttaa

>gi568815595r:9402214_9652679|GENSCAN_predicted_peptide_2|387_aa
MDASWSEGPHKELTHERMQFPHPGDFLSLAPINQQPQFSNPLPSTIPLKAPAQNSLQLPD
APSSAPGPALAGSLTQGRFSRASPAPARQPGAPSRAGGPRQPPPPPAPPPGTMLPSQEAS
KLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYCVGS
GLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFFFCNTATVYKIC
AWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNAL
ILSFLAFVLGNRQTDLLQEELKPENKGECAVGWGAAAGARPAHPEGELHRGMHRALLSAA
DRGPDQPRVRKDFQALEVAGGGLGPES

>gi568815595r:9402214_9652679|GENSCAN_predicted_CDS_2|1164_bp
atggatgccagctggtctgaaggaccccacaaggagctaactcatgaaagaatgcagttt
ccacatcctggtgatttcctctcccttgccccgatcaaccaacaaccccaattttccaac
cctttaccttccacgatccccttaaaagccccagcccagaactccttgcagctcccagac
gcccccagctctgccccaggccccgccctcgcgggttccttgactcagggccgcttctcg
cgtgcgtccccagctcccgcccggcagcccggcgctccgtcccgggccggcggcccccgc
cagccgccgccgccgccggccccgcctccgggcaccatgctgccctcgcaggaggcctcc
aagctctaccacgagcactacatgcggaactcgcgggccatcggcgtgctgtgggccatc
ttcaccatctgcttcgccatcatcaacgtggtggtcttcatccagccctactgggtgggc
gacagcgtgagcacccccaagcctggctacttcggcctcttccactactgcgtgggcagc
gggctggcgggccgcgagctcacctgccggggctccttcaccgacttcagcaccatcccg
tccagcgccttcaaggcggccgccttcttcgtgctgctctccatggtgctgatcctcggc
tgcatcacctgcttttcgcttttcttcttctgcaacacggctacggtctacaagatctgc
gcctggatgcagctcttggcagctctgtgcctcgtcctgggctgcatgatctttcctgat
ggctgggatgccgagaccatccgggacatgtgtggggccaagacggggaagtactccctg
ggggactgttcagtgcgctgggcatacatcctggccatcatcggcatcctcaacgccctc
atcctctccttcctcgccttcgtgctgggcaaccggcaaacagacctgctgcaggaggag
ctcaagccggagaacaaaggcgagtgtgctgtgggctggggggcagcggcgggagccagg
cctgctcaccctgagggagagctgcaccgagggatgcacagggccctgctgtcagctgca
gaccggggccctgatcagcccagagtcagaaaagactttcaggctctggaggtagcggga
gggggacttggacctgagagttag

>gi568815595r:9402214_9652679|GENSCAN_predicted_peptide_3|124_aa
MDFIGCVRGKGGKVLVHCEAGISHSPTSCKSSPMKTRQLCLKETFNYIKQRRSMIWSNFG
FMDQLLQKESEIPPSTPTPSLPLAKRGSRLFTEGHLQILSPGLQDAYCTFPSPVLALVPT
HRTV

>gi568815595r:9402214_9652679|GENSCAN_predicted_CDS_3|375_bp
atggacttcattggctgtgtcaggggaaaaggaggcaaggtcctggtccactgtgaggct
ggaatctcccattcacccaccagctgcaagtcttcccccatgaagaccagacagctctgc
ctgaaggagaccttcaattacatcaagcagaggaggagcatgatctggtccaattttggc
ttcatggaccagctcctacagaaggaatctgagatcccaccctccacgcccacccccagc
ctccctcttgccaagcgaggcagcaggctcttcactgaaggtcatttgcagatactgagc
ccaggcctgcaggatgcctactgcacattcccttccccggtgctggcactggtgcccacc
caccggacagtctaa

>gi568815595r:9402214_9652679|GENSCAN_predicted_peptide_4|53_aa
MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSK

>gi568815595r:9402214_9652679|GENSCAN_predicted_CDS_4|159_bp
atggccggcgctcgggccgccgccgccgctgcctcggcggggtcctcggcctcttcaggc
aaccagccgcctcaggagctggggcttggggagctgctggaggagttctcccggactcag
taccgggccaaggatggcagcgggaccggcggctctaag