GENSCAN 1.0 Date run: 8-Nov-116 Time: 10:07:06 Sequence gi568815577r:25624643_25829794 : 205152 bp : 39.58% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 15180 15246 67 2 1 101 87 209 0.971 21.39 1.02 Intr + 59241 59306 66 1 0 100 87 49 0.090 3.96 1.03 Intr + 65224 65331 108 2 0 49 121 17 0.341 0.44 1.04 Intr + 69114 69281 168 1 0 81 20 172 0.449 8.70 1.05 Intr + 74035 74237 203 2 2 37 95 151 0.635 8.78 1.06 Intr + 77528 77627 100 1 1 8 87 102 0.400 0.86 1.07 Intr + 81337 81444 108 2 0 43 108 48 0.302 1.64 1.08 Intr + 90535 90670 136 2 1 59 70 74 0.024 1.41 1.09 Term + 94397 94502 106 2 1 83 33 67 0.019 -2.40 1.10 PlyA + 95210 95215 6 1.05 2.05 PlyA - 95717 95712 6 1.05 2.04 Term - 100035 99998 38 1 2 118 49 62 0.982 1.82 2.03 Intr - 100708 100584 125 0 2 101 102 145 0.999 16.51 2.02 Intr - 105159 104989 171 2 0 100 98 202 0.836 20.54 2.01 Init - 105318 105284 35 0 2 61 80 34 0.807 -0.71 2.00 Prom - 105646 105607 40 -9.35 3.00 Prom + 106614 106653 40 -10.25 3.01 Init + 107720 107728 9 1 0 55 61 0 0.228 -5.36 3.02 Intr + 109137 109271 135 2 0 90 103 40 0.543 5.54 3.03 Intr + 109551 109617 67 2 1 67 61 69 0.713 -0.34 3.04 Intr + 109999 110127 129 2 0 93 100 82 0.777 9.65 3.05 Intr + 110222 110428 207 0 0 13 110 174 0.549 10.23 3.06 Intr + 110799 110936 138 1 0 8 92 92 0.256 1.11 3.07 Intr + 116955 117033 79 1 1 13 81 117 0.026 1.19 3.08 Intr + 120568 120712 145 1 1 36 91 134 0.999 7.86 3.09 Intr + 124394 124478 85 1 1 45 115 57 0.997 2.57 3.10 Intr + 127347 127592 246 1 0 47 45 278 0.453 15.91 3.11 Intr + 133368 133562 195 1 0 71 11 122 0.533 1.26 3.12 Intr + 137670 137723 54 1 0 88 92 79 0.982 6.33 3.13 Intr + 139568 139708 141 0 0 81 68 72 0.923 3.90 3.14 Intr + 139953 140145 193 1 1 72 121 237 0.998 23.03 3.15 Term + 144362 144590 229 2 1 65 52 274 0.999 16.62 3.16 PlyA + 144921 144926 6 1.05 4.00 Prom + 145570 145609 40 -6.85 4.01 Init + 154746 154964 219 2 0 71 73 296 0.972 25.08 4.02 Intr + 169246 169350 105 0 0 51 98 48 0.014 1.59 4.03 Intr + 185260 185298 39 0 0 138 61 45 0.027 4.30 4.04 Intr + 187694 187838 145 1 1 -6 98 125 0.022 3.03 4.05 Term + 198481 198593 113 2 2 102 32 81 0.856 1.64 4.06 PlyA + 199654 199659 6 1.05 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Init - 58206 57847 360 0 0 46 99 181 0.835 11.23 S.002 Init + 116957 117033 77 1 2 91 81 115 0.969 11.71 S.003 Term + 155017 155073 57 0 0 95 39 59 0.823 -1.59 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815577r:25624643_25829794|GENSCAN_predicted_peptide_1|353_aa MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN LEEDTVTLEVLGDVHVLAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRL LENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDL NISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKRRKRDGSYAQGFALCVYFHSWELKAT SKEMPNGWSPQVCTTGFAWLSIASQRLSPGTSTLQYPLSHNVNLSSSKGSFSL >gi568815577r:25624643_25829794|GENSCAN_predicted_CDS_1|1062_bp atggcgaggaggagccgccaccgcctcctcctgctgctgctgcgctacctggtggtcgcc ctgggctatcataaggcctatgggttttctgccccaaaagaccaacaagtagtcacagca gtagagtaccaagaggctattttagcctgcaaaaccccaaagaagactgtttcctccaga ttagagtggaagaaactgggtcggagtgtctcctttgtctactatcaacagactcttcaa ggtgattttaaaaatcgagctgagatgatagatttcaatatccggatcaaaaatgtgaca agaagtgatgcggggaaatatcgttgtgaagttagtgccccatctgagcaaggccaaaac ctggaagaggatacagtcactctggaagtattaggtgatgtgcatgtattggctccagca gttccatcatgtgaagtaccctcttctgctctgagtggaactgtggtagagctacgatgt caagacaaagaagggaatccagctcctgaatacacatggtttaaggatggcatccgtttg ctagaaaatcccagacttggctcccaaagcaccaacagctcatacacaatgaatacaaaa actggaactctgcaatttaatactgtttccaaactggacactggagaatattcctgtgaa gcccgcaattctgttggatatcgcaggtgtcctgggaaacgaatgcaagtagatgatctc aacataagtggcatcatagcagccgtagtagttgtggccttagtgatttccgtttgtggc cttggtgtatgctatgctcagaggaaaggctacttttcaaaaaggaggaagcgggatggg tcttatgcccaaggatttgcactttgtgtttacttccattcctgggaactaaaagcaaca tcaaaagaaatgcctaatggctggagcccacaggtgtgcaccacaggatttgcctggctt tcaatagcatctcaacgtttatctccgggaacttccaccctccagtaccctctcagtcac aacgtcaatctctccagttccaaaggctccttttccctctaa >gi568815577r:25624643_25829794|GENSCAN_predicted_peptide_2|122_aa MGNKEEKGTVVRISMILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDK IREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKP QA >gi568815577r:25624643_25829794|GENSCAN_predicted_CDS_2|369_bp atggggaataaggaggagaagggaactgtggtcagaatcagcatgattcttcagaggctc ttcaggttctcctctgtcattcggtcagccgtctcagtccatttgcggaggaacattggt gttacagcagtggcatttaataaggaacttgatcctatacagaaactctttgtggacaag attagagaatacaaatctaagcgacagacatctggaggacctgttgatgctagttcagag tatcagcaagagctggagagggagctttttaagctcaagcaaatgtttggtaatgcagac atgaatacatttcccaccttcaaatttgaagatcccaaatttgaagtcatcgaaaaaccc caggcctga >gi568815577r:25624643_25829794|GENSCAN_predicted_peptide_3|683_aa MSQMIKLYLRKIKLHVFSQLICSKSDCIDVTPSATRVKSTFIVSIIHHYHRVPREHMIAS DMIRKTGEGNKRVSILFLGLRQTPRSTNVEVSCDPGPGREGPQDTELLSPPSKVPSCQSL RRHHLRSTSGPGSAPTRLPAIAMHYGPPFQSVDAHRTGSVSETVCDRTGLGETEAKQEEE VEGPWDLTLLVAGAAGLTRRDAARGALAAAVLSRLWSAGGGDRADSGVAMTKREAEELIE IEIDGTEKAECTEESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQ DIQLDPERSLFDQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHA ESEAHLVEEAQVITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWST DQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYV LASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKVINSSAKAAKVQRAPRISGEDRSSPG NRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNY EKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTECEQKKLAKMQL HGIAQPVTAVALATASLQTEKDN >gi568815577r:25624643_25829794|GENSCAN_predicted_CDS_3|2052_bp atgagccagatgataaaactgtatctaagaaagattaagctgcacgtattctcacagtta atttgctctaagtctgactgcatagatgttactccttctgcaacacgggtaaaatccact ttcattgtttcaattatccaccattaccatcgggtgccacgagagcatatgatagcgtct gacatgatcagaaagactggggaaggcaacaagagggtatcgatcttatttctgggtcta cggcaaactccaaggtctacaaacgtagaggtcagctgtgaccccgggccaggccgtgaa ggtccccaggacacagagctgctctctcctcctagtaaagtcccgagctgccaaagcctc cgccgccaccacctccgctctacttccggccctggctccgcccccacacgcctacccgcc atcgcaatgcattatgggccgccgtttcagtcggtcgacgctcaccggacaggaagcgtc tcggagacagtctgcgaccggacgggtctaggtgagacagaagccaaacaggaggaggaa gtggaggggccctgggacctcacacttctagtcgcgggagctgcaggtcttacccggaga gacgctgcacgtggagccctcgccgctgccgttctcagccggctctggagtgcgggcggg ggcgacagggccgattccggagtggccatgactaaaagagaagcagaggagctgatagaa attgagattgatggaacagagaaagcagagtgcacagaagaaagcattgtagaacaaacc tacgcgccagctgaatgtgtaagccaggccatagacatcaatgaaccaataggcaattta aagaaactgctagaaccaagactacagtgttctttggatgctcatgaaatttgtctgcaa gatatccagctggatccagaacgaagtttatttgaccaaggagtaaaaacagatggaact gtacagcttagtgtacaggtaatttcttaccaaggaattgaaccaaagttaaacatcctt gaaattgttaaacctgcggacactgttgaggttgttattgatccagatgcccaccatgct gaatcagaagcacatcttgttgaagaagctcaagtgataactcttgatggcacaaaacac atcacaaccatttcagatgaaacttcagaacaagtgacaagatgggctgctgcactggaa ggctataggaaagaacaagaacgccttgggataccctatgatcccatacagtggtccaca gaccaagtcctgcattgggtggtttgggtaatgaaggaattcagcatgaccgatatagac ctcaccacactcaacatttcggggagagaattatgtagtctcaaccaagaagattttttt cagcgggttcctcggggagaaattctctggagtcatctggaacttctccgaaaatatgta ttggcaagtcaagaacaacagatgaatgaaatagttacaattgatcaacctgtgcaaatt attccagcatcagtgcaatctgctacacctactaccattaaagttataaatagtagtgcg aaagcagccaaagtacaaagagcgccgaggatttcaggagaagatagaagctcacctggg aacagaacaggaaacaatggccaaatccaactatggcagtttttgctagaacttcttact gataaggacgctcgagactgcatttcttgggttggtgatgaaggtgaatttaagctaaat cagcctgaactggttgcacagaaatggggacagcgtaaaaataagcctacgatgaactat gagaaactcagtcgtgcattaagatattattacgatggggacatgatttgtaaagttcaa ggcaagagatttgtgtacaagtttgtctgtgacttgaagactcttattggatacagtgca gcggagttgaaccgtttggtcacagaatgtgaacagaagaaacttgcaaagatgcagctc catggaattgcccagccagtcacagcagtagctctggctactgcttctctgcaaacggaa aaggataattga >gi568815577r:25624643_25829794|GENSCAN_predicted_peptide_4|206_aa MNTPEGRNSEHIRTSEGTNSGHAAFKNCNTARVHGFMLEVGKTKNPPIPDTFWRPRRDFC LSLSGETIAYRQACWGYMHEPPHLAMSSSFCCLSVSEVPPVIKDTSQKCDAPDPPSPSIM INLHPEYTKNSNSMKSRQNIRTNIPIRRYKNDRLGVVAHGCNPRTCKGQGVFVRCGQAGL RLGLRLPQQFYFCQLGYKKLCCNLVV >gi568815577r:25624643_25829794|GENSCAN_predicted_CDS_4|621_bp atgaacacaccggaaggaagaaactcggaacacatccgaacatcagaaggaacaaactcc ggacacgccgcctttaagaactgtaacaccgccagggtccacggcttcatgcttgaagtt ggtaagaccaagaacccaccaattccggacacgttttggcgaccacgaagggacttttgc ctgtcgctgagcggtgagaccatcgcctatcgccaagcatgctggggttatatgcatgag ccgccacacttggccatgtcatcttccttctgttgcttgtctgtatcggaagttcctccc gttattaaggataccagtcaaaagtgtgatgctcccgatcctccttcaccttccatcatg attaacttgcatccagaatatacaaagaactcgaactcaatgaaaagtcgacaaaatatt cgaacaaacattccaataagacgatataaaaatgaccggctgggcgtggttgctcatggc tgcaatcccagaacttgtaaaggccaaggtgtatttgtcaggtgtggacaggcaggtctg cggttgggcttgcgtcttcctcaacagttctacttctgccaactgggttataaaaagctc tgctgcaatctggtggtttaa