GENSCAN 1.0	Date run:  7-Nov-116	Time: 20:20:58

Sequence gi568815581f:49395418_49613006 : 217589 bp : 50.46% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 PlyA -   1107   1102    6                               1.05
 1.06 Term -   9787   9575  213  1  0   93   55   434 0.919  37.83
 1.05 Intr -  11437  11342   96  1  0   99  105    95 0.999  12.51
 1.04 Intr -  13741  13625  117  1  0   88   91   120 0.998  12.96
 1.03 Intr -  14056  13914  143  2  2   55   89   288 0.997  25.67
 1.02 Intr -  16422  16261  162  1  0   85  113   116 0.991  13.75
 1.01 Init -  24040  23851  190  1  1   59    4   207 0.007   6.84
 1.00 Prom -  28599  28560   40                              -6.06

 2.00 Prom +  33233  33272   40                              -6.06
 2.01 Init +  43623  43766  144  2  0   84   49   130 0.711   8.82
 2.02 Intr +  50214  50300   87  2  0   51  105    76 0.626   5.77
 2.03 Term +  50740  50781   42  0  0  107   43    61 0.848   0.66
 2.04 PlyA +  51553  51558    6                               1.05

 3.05 PlyA -  57093  57088    6                               1.05
 3.04 Term -  58748  58569  180  2  0   86   50    51 0.133  -1.29
 3.03 Intr -  63662  63631   32  0  2  131   89    24 0.394   4.65
 3.02 Intr -  77166  77022  145  0  1  122   20    40 0.042   0.46
 3.01 Init -  84165  84103   63  0  0  102   99    57 0.586   7.38
 3.00 Prom -  89677  89638   40                              -1.36

 4.02 PlyA -  92663  92658    6                              -0.45
 4.01 Sngl -  96728  96534  195  2  0   95   47   224 0.861  14.16
 4.00 Prom -  97756  97717   40                              -7.36

 5.00 Prom +  97860  97899   40                              -5.66
 5.01 Init + 100028 100066   39  1  0  101   84   152 0.237  14.29
 5.02 Intr + 106646 106787  142  1  1  120   79    46 0.908   6.83
 5.03 Intr + 110882 111241  360  0  0   45   96   836 0.990  75.29
 5.04 Intr + 114995 115247  253  0  1   77   94   293 0.983  25.29
 5.05 Intr + 116475 116635  161  0  2  101   84   262 0.999  26.73
 5.06 Term + 117291 117592  302  1  2  110   52   421 0.648  36.08
 5.07 PlyA + 122647 122652    6                               1.05

 6.07 PlyA - 123715 123710    6                               1.05
 6.06 Term - 124463 124319  145  1  1   98   45    26 0.759  -3.32
 6.05 Intr - 125467 125350  118  2  1   70   96    89 0.628   7.42
 6.04 Intr - 126299 126221   79  2  1  105   43    46 0.730   0.92
 6.03 Intr - 129639 129581   59  1  2   97   60    47 0.494   1.40
 6.02 Intr - 131058 130951  108  1  0   69   28   120 0.806   4.36
 6.01 Init - 135606 135555   52  0  1   58   48    69 0.569   1.22
 6.00 Prom - 143026 142987   40                              -1.76

 7.00 Prom + 144620 144659   40                              -5.36
 7.01 Init + 153576 153637   62  2  2   84   84    55 0.332   5.42
 7.02 Intr + 159371 159551  181  2  1   87   15    92 0.212   1.67
 7.03 Intr + 159590 159766  177  1  0   52   48    88 0.159   1.32
 7.04 Intr + 172401 172442   42  2  0   77   76    39 0.356   0.04
 7.05 Intr + 173045 173278  234  1  0    1   77   174 0.746   5.49
 7.06 Intr + 174994 175307  314  0  2   52   76   177 0.832   7.88
 7.07 Intr + 176176 176227   52  1  1   85   99     3 0.829   0.01
 7.08 Intr + 176361 176452   92  2  2  102  111    27 0.895   5.19
 7.09 Intr + 180448 180856  409  1  1   12  105   146 0.388   2.97
 7.10 Term + 183179 183883  705  1  0  104   46   933 0.955  84.22
 7.11 PlyA + 184921 184926    6                               1.05

 8.06 PlyA - 188279 188274    6                               1.05
 8.05 Term - 205105 204961  145  0  1   72   44    55 0.381  -3.12
 8.04 Intr - 206590 206448  143  1  2   70   75   186 0.730  14.65
 8.03 Intr - 211955 211833  123  2  0   35  116   164 0.999  14.68
 8.02 Intr - 212512 212457   56  2  2   74   95    44 0.333   2.40
 8.01 Intr - 216040 215863  178  1  1  103   77   111 0.944  10.99

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  17847  17760   88  0  1  104   77    50 0.983   6.34
S.002 Sngl -  24040  23828  213  1  0   59   44   214 0.969   7.55
S.003 Sngl -  29505  28852  654  0  0   78   48   161 0.843   7.28
S.004 Term - 149812 149708  105  1  0  153   48    46 0.974   5.51


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:49395418_49613006|GENSCAN_predicted_peptide_1|306_aa
MRSASARLPCLGSEKRLCLAAVQSSKCEVTAFLQVYPTAPNRQRPSRTGHDDDGSFVKKK
RGKLDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQ
NVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELV
SRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQ
KKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSV
LLQLPQ

>gi568815581f:49395418_49613006|GENSCAN_predicted_CDS_1|921_bp
atgaggagcgcctctgcccggctgccctgtctgggaagtgagaagcgcctctgcctggcc
gctgtgcaatcttccaagtgtgaagtgacagcctttctgcaggtgtacccaacagctccg
aatagacagcgaccatcgagaacgggccatgatgacgatggcagttttgtcaaaaagaaa
agggggaaattggatgctgggcacagagctgtcatctttgaccgattccgtggagtgcag
gacattgtggtaggggaagggactcattttctcatcccgtgggtacagaaaccaattatc
tttgactgccgttctcgaccacgtaatgtgccagtcatcactggtagcaaagatttacag
aatgtcaacatcacactgcgcatcctcttccggcctgtcgccagccagcttcctcgcatc
ttcaccagcatcggagaggactatgatgagcgtgtgctgccgtccatcacaactgagatc
ctcaagtcagtggtggctcgctttgatgctggagaactaatcacccagagagagctggtc
tccaggcaggtgagcgacgaccttacagagcgagccgccacctttgggctcatcctggat
gacgtgtccttgacacatctgaccttcgggaaggagttcacagaagcggtggaagccaaa
caggtggctcagcaggaagcagagagggccagatttgtggtggaaaaggctgagcaacag
aaaaaggcggccatcatctctgctgagggcgactccaaggcagctgagctgattgccaac
tcactggccactgcaggggatggcctgatcgagctgcgcaagctggaagctgcagaggac
atcgcgtaccagctctcacgctctcggaacatcacctacctgccagcggggcagtccgtg
ctcctccagctgccccagtga

>gi568815581f:49395418_49613006|GENSCAN_predicted_peptide_2|90_aa
MAILGPESNQIRCSPQSPQQLRRTAVRLRALSGWNGTSCPPLISGCPRYPRPDNGGFRGA
WMAGHSPLCEAELTAKLEVFVDLSGRSMAD

>gi568815581f:49395418_49613006|GENSCAN_predicted_CDS_2|273_bp
atggctattttggggcctgaatcaaatcaaatccgctgcagcccccagagcccccagcag
ctgcgcagaacagctgtccggctgagggcgctgagcggctggaatggcacttcctgcccc
ccactgatctctggctgcccaaggtacccccggcccgacaatgggggcttcagaggagcc
tggatggcaggacacagccccctctgtgaagcggagttgaccgccaagctggaggtcttc
gtggatttatcagggagaagcatggctgactaa

>gi568815581f:49395418_49613006|GENSCAN_predicted_peptide_3|139_aa
MGWGLLRAVEAGSHGLTAGPQGQRLGMEMWAAARLLDAAGSSSLPASEPKSHLSSYKATE
TLSKEGPPSGRPLKSSPPPQSQGDTKAESRQPPLILCPQTPEHYPIPHCPHEGIFQGHRK
EHLKGRRLVRQALVEVKKV

>gi568815581f:49395418_49613006|GENSCAN_predicted_CDS_3|420_bp
atgggctggggcctcctcagagccgtggaggcagggagtcacggactgacagccgggcct
caggggcagaggttgggcatggagatgtgggcagctgctagactcctggatgctgcaggg
tcctcctccctgccagcttcagagcccaaaagccacctgtcctcttacaaagccacagag
accctgagcaaagaggggccaccttctggaaggcccctcaagtcatctccacccccacag
agccaaggagacaccaaggctgagtccaggcagcctcccctgatcctctgtccccaaacc
cctgagcactaccccatccctcactgtccccatgaagggattttccagggccacaggaag
gaacacttgaagggaaggagactggtgcggcaggcactggtggaggtgaagaaagtatga

>gi568815581f:49395418_49613006|GENSCAN_predicted_peptide_4|64_aa
MTRSIYTKTSTTMTIIIMTTTSTITIITTTATITTTSNNTSTIMTIIIMPLPSVSLPESQ
LSPP

>gi568815581f:49395418_49613006|GENSCAN_predicted_CDS_4|195_bp
atgaccagaagcatctataccaaaactagtaccactatgaccatcatcattatgaccacc
accagtaccatcaccatcatcaccaccactgccaccatcaccaccacttctaacaacacc
agcaccattatgaccatcatcattatgccactgccatcagtgtcactaccagaatcacaa
ctatcaccaccatga

>gi568815581f:49395418_49613006|GENSCAN_predicted_peptide_5|418_aa
MDGPRLLLLLLLGVSLGGAKEACPTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLD
SVTFSDVVSATEPCKPCTECVGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACRVCE
AGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDPCLPCTVCEDTERQLRECTRWADAECE
EIPGRWITRSTPPEGSDSTAPSTQEPEAPPEQDLIASTVAGVVTTVMGSSQPVVTRGTTD
NLIPVYCSILAAVVVGLVAYIAFKRWNSCKQNKQGANSRPVNQTPPPEGEKLHSDSGISV
DSQSLHDQQPHTQTASGQALKGDGGLYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQ
PEHIDSFTHEACPVRALLASWATQDSATLDALLAALRRIQRADLVESLCSESTATSPV

>gi568815581f:49395418_49613006|GENSCAN_predicted_CDS_5|1257_bp
atggacgggccgcgcctgctgctgttgctgcttctgggggtgtcccttggaggtgccaag
gaggcatgccccacaggcctgtacacacacagcggtgagtgctgcaaagcctgcaacctg
ggcgagggtgtggcccagccttgtggagccaaccagaccgtgtgtgagccctgcctggac
agcgtgacgttctccgacgtggtgagcgcgaccgagccgtgcaagccgtgcaccgagtgc
gtggggctccagagcatgtcggcgccgtgcgtggaggccgacgacgccgtgtgccgctgc
gcctacggctactaccaggatgagacgactgggcgctgcgaggcgtgccgcgtgtgcgag
gcgggctcgggcctcgtgttctcctgccaggacaagcagaacaccgtgtgcgaggagtgc
cccgacggcacgtattccgacgaggccaaccacgtggacccgtgcctgccctgcaccgtg
tgcgaggacaccgagcgccagctccgcgagtgcacacgctgggccgacgccgagtgcgag
gagatccctggccgttggattacacggtccacacccccagagggctcggacagcacagcc
cccagcacccaggagcctgaggcacctccagaacaagacctcatagccagcacggtggca
ggtgtggtgaccacagtgatgggcagctcccagcccgtggtgacccgaggcaccaccgac
aacctcatccctgtctattgctccatcctggctgctgtggttgtgggccttgtggcctac
atagccttcaagaggtggaacagctgcaagcagaacaagcaaggagccaacagccggcca
gtgaaccagacgcccccaccagagggagaaaaactccacagcgacagtggcatctccgtg
gacagccagagcctgcatgaccagcagccccacacgcagacagcctcgggccaggccctc
aagggtgacggaggcctctacagcagcctgcccccagccaagcgggaggaggtggagaag
cttctcaacggctctgcgggggacacctggcggcacctggcgggcgagctgggctaccag
cccgagcacatagactcctttacccatgaggcctgccccgttcgcgccctgcttgcaagc
tgggccacccaggacagcgccacactggacgccctcctggccgccctgcgccgcatccag
cgagccgacctcgtggagagtctgtgcagtgagtccactgccacatccccggtgtga

>gi568815581f:49395418_49613006|GENSCAN_predicted_peptide_6|186_aa
MPNTDEDVEQQELSFTAVGFCVLRDGRALSSLADTARMVRSLRVEVDLSGQEGGLAYVAL
CQAPGGTSLLQPGAGFKRLPCRILPGSLQPENFLPLRNPNCGHPKVRRVEGEPSGLLLKA
LGPGVELGLQNVDSKGFSGAQGYRLSGPPRPSPLDEEAFHIVPSLIAASLPWMKEQREAL
GEEMGP

>gi568815581f:49395418_49613006|GENSCAN_predicted_CDS_6|561_bp
atgccaaacactgatgaggatgtggaacagcaggaactctcattcactgctgttgggttc
tgcgttctccgggatggccgtgctctgtcctcacttgctgacacagcccgcatggtccga
agcctccgtgtggaagtggatctgagtgggcaggagggaggcctagcctatgtggccctg
tgccaggctcctggcggcaccagcctcctgcagcctggggctggattcaaacggctcccc
tgcagaattcttcctgggtccctgcagccagaaaacttcctccctcttcggaaccccaac
tgcgggcatcccaaggtccgcagggtagaaggtgaaccatctggactactgttgaaagcc
ttaggccctggggtggagctggggcttcagaatgtggactccaagggcttctcaggagca
cagggttacaggctcagcggacccccacgcccctccccgctggatgaagaggcatttcac
attgttccaagtctcatcgctgcttcactgccctggatgaaagagcagagggaggcacta
ggggaagagatgggaccctga

>gi568815581f:49395418_49613006|GENSCAN_predicted_peptide_7|755_aa
MPATQGDCSAAASGYLYDNSSMQPVLQVDQQLMTVWTPEKELPRGPIPMANRFICTQEQE
ATRGRGDRRIWGQGLFPQGPRHPGPEHLAGETFPLHTPQESEHHVTPGKPALECTSGEPY
SPRPSHYRPRANSLMGALSPNQKILDSIPPVEAQHDSDTWKSVAERVNECEYNNSRHLLS
TYCVPDAVLSSLKCGYSYPHEETEAQRGDVICQTTLWQIQDGDPGDLVPKIKTLKCSEKE
PRTTPSRQCFTGDRALSTGYVPSHTRHVLTPGGGQDDPPLQMRRLPPKKGRDCPQITLAT
ESEAPNPGCRTPAATPSPLHQSTSRSAHSQEKVPSGGSQLKGHILAEAFPDPSQPKFSMQ
IGLQSPLSTLYLHTSPGPDIKVDTWSPAHLGESGAAGAEGGAERRSGAAEPRRSWGPSRR
SGRTSGTSSGGRAARSWTRGGGRRLHSWTEGGGVGPGRPAEGRAAGRRGLEHGTARLKEQ
EGEGGLGPRKEKGRARGRERRRKMQLTRCCFVFLVQGSLYLVICGQDDGPPGSEDPERDD
HEGQPRPRVPRKRGHISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRPNHSPPPSAKVK
KIFGWGDFYSNIKTVALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEF
HQEQQIFIEAKASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPFK
VVCVYIAFYSTDYRLVQKVCPDYNYHSDTPYYPSG

>gi568815581f:49395418_49613006|GENSCAN_predicted_CDS_7|2268_bp
atgcctgccacacagggtgactgctcggcggctgcctctggctatctttatgacaatagc
agcatgcagcctgtgctccaggtggaccagcaactgatgacagtgtggacacctgagaag
gagctgccccgtggccccatccccatggcaaacaggttcatctgtacccaggaacaggag
gccacaaggggaaggggagacaggaggatctggggccaaggtctttttccacaagggccc
aggcatcccggcccggagcacctggctggggagacctttccactccacacgccacaggag
agtgagcaccacgtgactcctgggaagcctgccctggaatgcacgtccggggagccctat
tccccccgaccttcccactacagacctcgggccaacagcctaatgggggccctcagtcct
aatcagaagatcctagattccatccccccagtagaagctcagcacgacagcgacacttgg
aagtctgtggctgaacgagtaaatgaatgcgaatataacaacagccggcacttactgagc
acctactgtgtgccagacgctgttctcagcagtctaaaatgtggatactcttatccccac
gaagaaactgaggcacagagaggtgatgtaatttgccagacgacactgtggcaaatccag
gatggggacccaggcgatctggttccaaagatcaagacactgaagtgtagcgagaaggag
ccccgcacgaccccttcccgccagtgcttcactggggacagagcactttctaccggctac
gtgccgtctcacactcgccacgtcctcaccccaggaggcgggcaggatgatccccctttg
cagatgaggaggctaccgcccaagaaggggagagactgcccccagatcaccctggccaca
gagagcgaggcccccaatccaggctgccggactccagctgccacgccctccccactccac
cagagcacaagcaggagcgctcacagccaggagaaggtcccttctggcggatcccagctg
aaaggtcacattcttgcagaggcattccctgacccctcccagcccaaattctccatgcaa
ataggactgcagtctcccctgtccacactgtacctccacaccagcccaggaccggacata
aaagtagacacttggtccccagcacatctgggcgagagcggcgccgctggagccgagggg
ggcgccgagcgcagatctggagcagcagagccacggcgcagctggggcccttcgaggcgc
tcggggcgcacatctgggacctcgagcgggggccgtgccgcgcgcagctggaccagggga
ggggggcggcggctgcacagctggaccgaagggggcggggtcggccctgggcgacccgct
gaggggagggccgcgggccgccggggactggagcatgggacggcgcgcctgaaggagcag
gaaggggaaggaggcctgggaccccgaaaagagaaggggagagcgaggggacgagagcgg
aggaggaagatgcaactgactcgctgctgcttcgtgttcctggtgcagggtagcctctat
ctggtcatctgtggccaggatgatggtcctcccggctcagaggaccctgagcgtgatgac
cacgagggccagccccggccccgggtgcctcggaagcggggccacatctcacctaagtcc
cgccccatggccaattccactctcctagggctgctggccccgcctggggaggcttggggc
attcttgggcagccccccaaccgcccgaaccacagccccccaccctcagccaaggtgaag
aaaatctttggctggggcgacttctactccaacatcaagacggtggccctgaacctgctc
gtcacagggaagattgtggaccatggcaatgggaccttcagcgtccacttccaacacaat
gccacaggccagggaaacatctccatcagcctcgtgccccccagtaaagctgtagagttc
caccaggaacagcagatcttcatcgaagccaaggcctccaaaatcttcaactgccggatg
gagtgggagaaggtagaacggggccgccggacctcgctttgcacccacgacccagccaag
atctgctcccgagaccacgctcagagctcagccacctggagctgctcccagcccttcaaa
gtcgtctgtgtctacatcgccttctacagcacggactatcggctggtccagaaggtgtgc
ccagattacaactaccatagtgataccccctactacccatctgggtga

>gi568815581f:49395418_49613006|GENSCAN_predicted_peptide_8|214_aa
VSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAA
RSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKY
ALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKS
MVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS

>gi568815581f:49395418_49613006|GENSCAN_predicted_CDS_8|645_bp
gtgagtgttgtgcaagattctgtcaacatttctggccagaataccatgaacatggtaaag
gttcctgagtgccggctggcagatgagttaggaggactgtgggagaattcccggttcaca
gactgctgcttgtgtgttgccggccaggaattccaggctcacaaggctatcttagcagct
cgttctccggtttttagtgccatgtttgaacatgaaatggaggagagcaaaaagaatcga
gttgaaatcaatgatgtggagcctgaagtttttaaggaaatgatgtgcttcatttacacg
gggaaggctccaaacctcgacaaaatggctgatgatttgctggcagctgctgacaagtat
gccctggagcgcttaaaggtcatgtgtgaggatgccctctgcagtaacctgtccgtggag
aacgctgcagaaattctcatcctggccgacctccacagtgcagatcagttgaaaactcag
gcagtggatttcatcaactatcatgcttcggatgtcttggagacctctgggtggaagtca
atggtggtgtcacatccccacttggtggctgaggcataccgctctctggcttcagcacag
tgcccttttctgggacccccacgcaaacgcctgaagcaatcctaa