GENSCAN 1.0	Date run:  6-Nov-116	Time: 06:39:07

Sequence gi568815581r:49106760_49307422 : 200663 bp : 47.07% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  25964  26047   84  1  0   32  100   162 0.419  11.82
 1.02 Intr +  34513  34688  176  0  2   44   85    96 0.244   3.64
 1.03 Intr +  35276  35413  138  2  0   86   80   110 0.281   9.58
 1.04 Intr +  46041  46147  107  0  2  125  111    73 0.960  13.16
 1.05 Intr +  49807  49844   38  2  2  110  105    41 0.577   5.98
 1.06 Intr +  52278  52448  171  2  0   96   69   194 0.669  18.44
 1.07 Intr +  52960  53035   76  0  1   31   85    90 0.672   2.09
 1.08 Intr +  53796  53882   87  1  0  101  110    78 0.999  11.24
 1.09 Intr +  57329  57516  188  0  2   80   95   244 0.999  23.71
 1.10 Intr +  59355  59495  141  2  0   89   79   241 0.998  23.85
 1.11 Intr +  61922  62141  220  1  1   57   75   165 0.897   9.97
 1.12 Intr +  62764  62912  149  2  2  134    9   102 0.007   6.85
 1.13 Intr +  65401  65541  141  0  0   97   39    59 0.005   2.45
 1.14 Intr +  76184  76318  135  1  0   72   69   129 0.524  10.16
 1.15 Intr +  76655  76805  151  1  1   71   66    43 0.287   0.14
 1.16 Term +  85513  85790  278  2  2  -13   42   213 0.450   2.22
 1.17 PlyA +  86029  86034    6                               1.05

 2.03 PlyA -  87649  87644    6                               1.05
 2.02 Term - 100123  99998  126  1  0   91   45   138 0.682   8.08
 2.01 Init - 100663 100580   84  1  0   96  105   156 0.998  18.92
 2.00 Prom - 101051 101012   40                             -11.82

 3.00 Prom + 102309 102348   40                              -7.96
 3.01 Init + 103966 104082  117  0  0   90   96   202 0.938  21.40
 3.02 Intr + 104348 104456  109  1  1   89   68     5 0.417  -1.54
 3.03 Intr + 107114 107222  109  0  1   70   95    37 0.504   1.94
 3.04 Intr + 109714 109939  226  1  1   80  110   300 0.531  29.39
 3.05 Intr + 110980 111156  177  0  0   74   75   282 0.965  25.62
 3.06 Intr + 112781 112866   86  1  2  109   60    51 0.963   3.02
 3.07 Intr + 113099 113194   96  2  0   98   80   117 0.999  11.02
 3.08 Intr + 113482 113567   86  1  2   65   90    82 0.806   5.56
 3.09 Intr + 115332 115466  135  1  0   72   77    90 0.960   6.84
 3.10 Term + 115793 115956  164  0  2  100   48   243 0.999  19.60
 3.11 PlyA + 116237 116242    6                               1.05

 4.02 PlyA - 116628 116623    6                              -3.94
 4.01 Sngl - 118236 117487  750  0  0   96   47  1468 0.431 139.68
 4.00 Prom - 121320 121281   40                              -3.56

 5.07 PlyA - 121571 121566    6                              -0.45
 5.06 Term - 124159 123940  220  0  1   48   55   128 0.106   2.01
 5.05 Intr - 151150 151004  147  0  0  109   95   -10 0.002   1.15
 5.04 Intr - 183814 183648  167  1  2  125   66    34 0.308   3.66
 5.03 Intr - 192165 191873  293  1  2   90   69   251 0.715  20.25
 5.02 Intr - 195021 194888  134  2  2   72   70   -47 0.164  -7.81
 5.01 Intr - 198930 198876   55  1  1   84   98   100 0.592   8.64

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  45523  45638  116  0  2   68   80    17 0.883  -3.26
S.002 Term +  62764  62969  206  2  2  134   43   150 0.989  12.63


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:49106760_49307422|GENSCAN_predicted_peptide_1|759_aa
GGAVGGLAARLRDIRQSEGGGIRDDFGRILVIILVLGIVGFMFGSMFLQAVFSSPKPELP
SPAPGVQKLKLLPEERLRNLFSYDGIWLFPKNQCKCEANKEQGGYNFQDAYGQSDLPAVK
ARRQAEFEHFQRREGLPRPLPLLVQPNLPFGYPVHGVEVMPLHTVPIPGLQFEGPDAPVY
EVTLTASLGTLNTLADVPDSVVQGRGQKQLIISTSDRKLLKFILQHVTYTSTGYQHQKYY
PHIAIDPIEPLEERTNHAVRFAPVSLESRSSVAKFPVTIRHPVIPKLYDPGPERKLRNLV
TIATKTFLRPHKLMIMLRSIREYYPDLTVIVADDSQKPLEIKDNHVEYYTMPFGKGWFAG
RNLAISQVTTKYVLWVDDDFLFNEETKIEVLVDVLEKTELDVVGGSVLGNVFQFKLLLEQ
SENGACLHKRMGFFQPLDGFPSCVVTSGVVNFFLAHTERLQRVGFDPRLQRVAHSEFFID
GLGTLLVGSCPEVIIGHQSRSPVVDSELAALEKTYNTYRSNTLTRVGGCVRQLLLMIVGV
LLSISLDMAATRGSSGSSWNLFLSIWLVARFQVHRYQQHENGLIQKVGVTGGQFFWLEIS
VATVPLPEFLSCIRKNELFVLSCPVSLPSLSSGHPLPALAEPRAFMDLKEEEVHADWSMS
SHGQAGRVRPHIANPASLLPFRPPSPRRSAGRHDIPGTRNAGNTKDAEALATPPVGPRSR
AQSLKHGHRCRSGKAAQSPPSLRRLAAALRSQQVPWCNG

>gi568815581r:49106760_49307422|GENSCAN_predicted_CDS_1|2280_bp
ggcggggcagtcggcggcctggctgctaggctccgtgacatccggcagtctgagggcggc
gggattcgggatgacttcgggcggatattggtcataatcctggtacttggcattgttgga
tttatgttcggaagcatgttccttcaagcagtgttcagcagccccaagccagaactccca
agtcctgccccgggtgtccagaagctgaagcttctgcctgaggaacgtctcaggaacctc
ttttcctacgatggaatctggctgttcccgaaaaatcagtgcaaatgtgaagccaacaaa
gagcagggaggttacaactttcaggatgcctatggccagagcgacctcccagcggtgaaa
gcgaggagacaggctgaatttgaacactttcagaggagagaagggctgccccgcccactg
cccctgctggtccagcccaacctcccctttgggtacccagtccacggagtggaggtgatg
cccctgcacacggttcccatcccaggcctccagtttgaaggacccgatgcccccgtctat
gaggtcaccctgacagcttctctggggacactgaacacccttgctgatgtcccagacagt
gtggtgcagggcagaggccagaagcagctgatcatttctaccagtgaccggaagctgttg
aagttcattcttcagcacgtgacatacaccagcacggggtaccagcaccagaagtactat
ccccacattgccattgaccccatagagccactcgaggagagaacaaatcatgctgtgcgc
tttgcacctgtgagtctggagtccaggtcctcagtggccaagtttccagtgaccatccgc
catcctgtcatacccaagctatacgaccctggaccagagaggaagctcagaaacctggtt
accattgctaccaagactttcctccgcccccacaagctcatgatcatgctccggagtatt
cgagagtattacccagacttgaccgtaatagtggctgatgacagccagaagcccctggaa
attaaagacaatcacgtggagtattacactatgccctttgggaagggttggtttgctggt
aggaacctggccatatctcaggtcaccaccaaatacgttctctgggtggacgatgatttt
ctcttcaacgaggagaccaagattgaggtgctggtggatgtcctggagaaaacagaactg
gacgtggtaggcggcagtgtgctgggaaatgtgttccagtttaagttgttgctggaacag
agtgagaatggggcctgccttcacaagaggatgggatttttccaacccctggatggcttc
cccagctgcgtggtgaccagtggcgtggtcaacttcttcctggcccacacggagcgactc
caaagagttggctttgatccccgcctgcaacgagtggctcactcagaattcttcattgat
gggctagggaccctactcgtggggtcatgcccagaagtgattataggtcaccagtctcgg
tctccagtggtggactcagaactggctgccctagagaagacctacaatacataccggtcc
aacaccctcacccgggtaggtggctgtgttcgacagctgttgctcatgatagttggggtc
ctcctcagcatcagtcttgacatggctgcaaccaggggatcctcgggatcctcctggaat
ctcttcctcagcatctggctcgtggcaaggtttcaggtacatcgttatcagcagcatgaa
aacggactaatacagaaagttggtgttactgggggtcaatttttctggctggaaatctct
gtagccacagtgcctttgcctgagttcttgtcctgcatccggaagaatgagctgttcgtc
ctgtcctgtcctgtctccctgccctctttgtcctctggccatcctctgcctgctctggct
gagcccagggcttttatggacctcaaagaggaggaagtgcatgccgattggtccatgagc
agccatgggcaggccggaagagtccggccccacatcgccaaccccgccagcctgctgcct
ttccgacctcccagcccccggaggagcgcaggaagacatgatatccccgggaccagaaac
gccgggaacacgaaggacgcagaagccctcgccacgccgcccgtggggccccggtccagg
gcccagtccctcaaacacggacaccgctgccgctctggaaaggccgcccagagccctcct
agcttgaggagactcgcggccgccttaagaagccagcaggtcccatggtgtaatggttag

>gi568815581r:49106760_49307422|GENSCAN_predicted_peptide_2|69_aa
MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
KEKGGCLIS

>gi568815581r:49106760_49307422|GENSCAN_predicted_CDS_2|210_bp
atggcccaggatctcagcgagaaggacctgttgaagatggaggtggagcagctgaagaaa
gaagtgaaaaacacaagaattccgatttccaaagcgggaaaggaaatcaaggagtacgtg
gaggcccaagcaggaaacgatccttttctcaaaggcatccctgaggacaagaatcccttc
aaggagaaaggtggctgtctgataagctga

>gi568815581r:49106760_49307422|GENSCAN_predicted_peptide_3|434_aa
MAELQQLQEFEIPTGREALRGNHSALLRVADYCEDNYVQVSPQVHPSEFPRVNPETQSLR
PHTDAGDHSISRPALVKEGPELNQNLLSCLVLISWVDFFAYSIFLVTYAEEIQPRTQWKM
LALRPGLCVFQATDKRKALEETMAFTTQALASVAYQVGNLAGHTLRMLDLQGAALRQVEA
RVSTLGQMVNMHMEKVARREIGTLATVQRLPPGQKVIAPENLPPLTPYCRRPLNFGCLDD
IGHGIKDLSTQLSRTGTLSRKSIKAPATPASATLGRPPRIPEPVHLPVVPDGRLSAASSA
FSLASAGSLDPPPPPAAVEVFQRPPTLEELSPPPPDEELPLPLDLPPPPPLDGDELGLPP
PPPGFGPDEPSWVPASYLEKVVTLYPYTSQKDNELSFSEGTVICVTRRYSDGWCEGVSSE
GTGFFPGNYVEPSC

>gi568815581r:49106760_49307422|GENSCAN_predicted_CDS_3|1305_bp
atggcggagctacagcagctgcaggagtttgagatccccactggccgggaggctctgagg
ggcaaccacagtgccctgctgcgggtcgctgactactgcgaggacaactatgtgcaggtg
tcacctcaggttcatccttctgagttcccacgggtcaatccagagacccaaagcctccgt
cctcacacagatgctggcgatcattctatttccaggccggctctggtaaaggaaggtcct
gaactaaatcaaaatctgctctcctgtctggtgttaatatcctgggttgatttctttgcc
tattcaatcttcttggtgacctatgctgaggagatccagccaaggacccagtggaagatg
ctggcccttaggccagggctgtgtgtatttcaggccacagacaagcggaaggcgctggag
gagaccatggccttcactacccaggcactggccagcgtggcctaccaggtgggcaacctg
gccgggcacactctgcgcatgttggacctgcagggggccgccctgcggcaggtggaagcc
cgtgtaagcacgctgggccagatggtgaacatgcatatggagaaggtggcccgaagggag
atcggcaccttagccactgtccagcggctgccccccggccagaaggtcatcgccccagag
aacctaccccctctcacgccctactgcaggagacccctcaactttggctgcctggacgac
attggccatgggatcaaggacctcagcacgcagctgtcaagaacaggcaccctgtctcga
aagagcatcaaggcccctgccacacccgcctccgccaccttggggagaccaccccggatt
cccgagccagtgcacctgccggtggtgcccgacggcagactctccgccgcctcctctgcg
ttttccctggcctcggccggctccttggacccacctcctccaccagcagccgtcgaggtg
ttccagcggcctcccacgctggaggagttgtccccacccccaccggacgaagagctgccc
ctgccactggacctgcctcctcctccacccctggatggagatgaattggggctgcctcca
cccccaccaggatttgggcctgatgagcccagctgggtgcctgcctcatacttggagaaa
gtggtgacactgtacccatacaccagccagaaggacaatgagctctccttctctgagggc
actgtcatctgtgtcactcgccgctactccgatggctggtgcgagggcgtcagctcagag
gggactggattcttccctgggaactatgtggagcccagctgctga

>gi568815581r:49106760_49307422|GENSCAN_predicted_peptide_4|249_aa
MAAQGAPRFLLTFDFDETIVDENSDDSIVRAAPGQRLPESLRATYREGFYNEYMQRVFKY
LGEQGVRPRDLSAIYEAIPLSPGMSDLLQFVAKQGACFEVILISDANTFGVESSLRAAGH
HSLFRRILSNPSGPDARGLLALRPFHTHSCARCPANMCKHKVLSDYLRERAHDGVHFERL
FYVGDGANDFCPMGLLAGGDVAFPRRGYPMHRLIQEAQKAEPSSFRASVVPWETAADVRL
HLQQVLKSC

>gi568815581r:49106760_49307422|GENSCAN_predicted_CDS_4|750_bp
atggccgcgcagggcgcgccgcgcttcctcctgaccttcgacttcgacgagactatcgtg
gacgaaaacagcgacgattcgatcgtgcgcgccgcgccgggccagcggctcccggagagc
ctgcgagccacctaccgcgagggcttctacaacgagtacatgcagcgcgtcttcaagtac
ctgggcgagcagggcgtgcggccgcgggacctgagcgccatctacgaagccatccctttg
tcgccaggcatgagcgacctgctgcagtttgtggcaaaacagggcgcctgcttcgaggtg
attctcatctccgatgccaacacctttggcgtggagagctcgctgcgcgccgccggccac
cacagcctgttccgccgcatcctcagcaacccgtcggggccggatgcgcggggactgctg
gctctgcggccgttccacacacacagctgcgcgcgctgccccgccaacatgtgcaagcac
aaggtgctcagcgactacctgcgcgagcgggcccacgacggcgtgcacttcgagcgcctc
ttctacgtgggcgacggcgccaacgacttctgccccatggggctgctggcgggcggcgac
gtggccttcccgcgccgcggctaccccatgcaccgcctcattcaggaggcccagaaggcc
gagcccagctcgttccgcgccagcgtggtgccctgggaaacggctgcagatgtgcgcctc
cacctgcaacaggtgctgaagtcgtgctga

>gi568815581r:49106760_49307422|GENSCAN_predicted_peptide_5|338_aa
XAYSLVNGNDGVDDDDNSSAGITGLKQHTLPEVEVFKTVRGNRLKRRKTIWAQNSSRKMN
MSHREKPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFR
VTSPVNVPPAVQIPLTTSPATPVPSVVNTATTPTPPINMNPATTITSIGGTRALGELWSM
SKEMLLTFSAPKRYLLHQGTSPLGQALPPDQCNGHSSFWPHSHFDPLILTCPLAHGYVRN
NGTHFTGAKPKEKSEVANGTPQNTRCWRSRSLRGRREAWPRAARPFDVRRHRCDWTVACD
VGDCGGLRCCSSRSAGRGSGSGSGSRAFKGDAAAARGG

>gi568815581r:49106760_49307422|GENSCAN_predicted_CDS_5|1017_bp
ngagcttatagtctggtgaatggtaatgatggtgttgatgatgatgataatagcagtgct
gggattacaggcttgaaacaacacaccctgccagaagttgaagtttttaagacggttaga
ggaaatcgattaaaaagaaggaaaacaatctgggctcagaattcatccagaaagatgaat
atgagtcacagagagaaaccctttatctgtgaaatctgtggcaaaagcttcaccagccgc
cccaacatgaagagacaccgcagaactcacacaggcgagaagccctatccatgtgatgtg
tgtggccagcggttccgcttctcgaacatgcttaaggcccacaaggagaagtgctttcgg
gtgaccagccccgtgaatgtgccacctgctgtccagatcccacttacaacttccccagcc
accccagttccttctgtggtgaacacagccacaaccccaacccctccaatcaatatgaat
cctgccaccaccatcacatctataggaggaacaagagcactgggggaactctggagtatg
agtaaggaaatgcttctcaccttctctgctccaaagagatatctgttacatcagggaaca
agtcctctaggtcaggcacttcctcctgaccagtgcaacgggcactccagcttctggcct
catagccactttgaccccttgattctgacatgtcctctggctcatgggtatgtcagaaat
aatggcacccattttacaggtgcaaaaccaaaggaaaaaagtgaagtggccaatggcaca
ccacaaaatacaagatgctggcgctcccggagcctccggggcaggagggaggcgtggcct
cgggcggcccgcccctttgatgtgcgccggcaccgctgcgattggacagtcgcttgtgac
gttggggactgcggtgggctccgctgctgcagcagccgcagcgccggccgcggctccggc
tccggctccggctcccgggcatttaaaggggacgcggcggctgcccgggggggatga