GENSCAN 1.0	Date run:  6-Nov-116	Time: 13:55:44

Sequence gi568815581f:9726064_9989702 : 263639 bp : 46.74% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1891   2630  740  2  2  123  105   397 0.186  36.06
 1.02 Intr +   8589   8679   91  2  1   39   66    67 0.099  -0.83
 1.03 Term +  17169  17275  107  1  2  107   49    89 0.799   5.47
 1.04 PlyA +  17794  17799    6                               1.05

 2.05 PlyA -  17813  17808    6                               1.05
 2.04 Term -  38503  38425   79  0  1   83   29    71 0.084  -2.06
 2.03 Intr -  45633  45429  205  1  1   28   45   345 0.309  22.46
 2.02 Intr -  46859  46704  156  0  0  102   45   202 0.918  17.28
 2.01 Init -  51208  51130   79  1  1   90   89    34 0.920   4.93
 2.00 Prom -  51874  51835   40                              -1.56

 3.05 PlyA -  52832  52827    6                               1.05
 3.04 Term -  53364  53227  138  0  0   51   44    74 0.866  -2.74
 3.03 Intr -  53972  53757  216  2  0   43   80   330 0.558  26.40
 3.02 Intr -  55531  55419  113  2  2  125  116    65 0.988  13.10
 3.01 Init -  65221  65068  154  1  1   67   98   265 0.524  23.54
 3.00 Prom -  69658  69619   40                              -3.06

 4.06 PlyA -  70861  70856    6                               1.05
 4.05 Term -  76581  76323  259  2  1   82   42   162 0.637   6.02
 4.04 Intr -  81538  81427  112  2  1   72  111    47 0.916   4.84
 4.03 Intr -  82919  82767  153  0  0   81   80    91 0.954   7.64
 4.02 Intr -  84555  84508   48  1  0   87   94    21 0.508   1.25
 4.01 Init -  96008  95699  310  2  1   92  105   381 0.985  35.68
 4.00 Prom - 101134 101095   40                              -6.96

 5.00 Prom + 101540 101579   40                              -2.56
 5.01 Init + 101921 101953   33  1  0   55   96    29 0.304   0.34
 5.02 Intr + 107744 107831   88  1  1   85  107    30 0.769   4.14
 5.03 Intr + 116432 116553  122  0  2   82   92    89 0.737   8.91
 5.04 Intr + 117564 117746  183  2  0   97   37    59 0.500   1.68
 5.05 Intr + 128432 128538  107  1  2  101  109    66 0.273   9.01
 5.06 Intr + 131360 131513  154  2  1   60   74   202 0.899  16.07
 5.07 Intr + 133879 134038  160  0  1  138   84   166 0.990  20.76
 5.08 Intr + 137698 137893  196  2  1  110   75    41 0.612   3.47
 5.09 Intr + 144438 144683  246  0  0   90   44    97 0.072   2.07
 5.10 Intr + 154315 154453  139  1  1  102  103   129 0.999  16.27
 5.11 Intr + 161869 161910   42  0  0  101   64    83 0.979   5.64
 5.12 Term + 163307 163642  336  1  0  104   46   341 0.992  26.07
 5.13 PlyA + 164679 164684    6                               1.05

 6.05 PlyA - 165478 165473    6                               1.05
 6.04 Term - 172141 172032  110  2  2   50   44   134 0.945   3.87
 6.03 Intr - 172346 172320   27  0  0   97   90    27 0.759   1.89
 6.02 Intr - 175037 174926  112  2  1   86   23   161 0.960   9.35
 6.01 Init - 179117 178737  381  2  0   56   61   981 0.822  89.07
 6.00 Prom - 184163 184124   40                              -5.56

 7.12 PlyA - 184474 184469    6                               1.05
 7.11 Term - 191278 191165  114  1  0  117   37   213 0.984  17.67
 7.10 Intr - 192036 191938   99  0  0   87   75   183 0.891  17.21
 7.09 Intr - 193642 193563   80  2  2   75   99   131 0.912  12.17
 7.08 Intr - 199536 199413  124  0  1   64  119   219 0.953  22.76
 7.07 Intr - 200706 200578  129  0  0   84  100   355 0.956  37.19
 7.06 Intr - 208181 208103   79  1  1  111   86    63 0.987   7.95
 7.05 Intr - 214137 214063   75  2  0  116   96    86 0.997  10.83
 7.04 Intr - 217173 217058  116  0  2  117   67   175 0.998  17.55
 7.03 Intr - 220920 220831   90  0  0  113   94   144 0.828  17.69
 7.02 Intr - 233265 233139  127  2  1   78   98    97 0.563  10.38
 7.01 Init - 235805 235651  155  2  2   99   53    60 0.920   3.06
 7.00 Prom - 236180 236141   40                              -2.16

 8.07 PlyA - 236528 236523    6                               1.05
 8.06 Term - 239442 239374   69  0  0   97   54    21 0.495  -2.46
 8.05 Intr - 243699 243614   86  1  2   97  110    51 0.439   7.74
 8.04 Intr - 253400 253312   89  1  2  121   77    -9 0.298   0.91
 8.03 Intr - 260052 259986   67  1  1   90   72    74 0.735   3.96
 8.02 Intr - 261937 261859   79  1  1   33   52    99 0.676  -0.08
 8.01 Init - 262482 262435   48  0  0   84   66    70 0.735   5.35

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 126797 126600  198  2  0  -57   41   300 0.805   8.20


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:9726064_9989702|GENSCAN_predicted_peptide_1|312_aa
XGLEPRRLVRGVKGRSISMKAPTTSRAKQGPFKTMPLRWSFGSKEKPPGASVELVEYLES
RRRPRSTSQSIVSLLTGTAGEDEKSASPRSNVALPANSEDGGRAIERGPAGVPCPSAQPN
HCLAPGNSDGPNTARKLKENAGQDIKLPRKFDLPLTVMPSVEHEKPARPEGQKAMNWKES
FQMGSKSSPPSPYMGFSGNSKDSRRGTSELDRPLQGTLTLLRSVFRKKENRRNERAEVSP
QVPPVSLYPAILSFKGVWIHELNQVRELDEKLRLFNAGTEDAGQDTVNTRLFTSLGENQT
SASTPETGQAAS

>gi568815581f:9726064_9989702|GENSCAN_predicted_CDS_1|939_bp
ngagggttggagcccaggcgtttggtacggggcgtgaaaggcagaagcattagcatgaag
gcacccaccacttcccgagccaagcagggaccattcaagaccatgcctctgcggtggtcc
tttggatccaaggagaaaccaccaggtgcctccgtcgagttggtggagtacttggaatcc
agacgaagacctcggtccacgagccagtccattgtgtcgctgttgacgggcactgcgggt
gaggatgagaagtcagcatcgccgaggtccaacgtcgcccttcctgctaacagcgaagat
ggtgggcgggccattgaaagaggtccagccggggtgccctgtccctcggctcaacccaac
cactgtctggcccctggaaactcagatggtccaaacacagcaaggaaactcaaggaaaat
gcagggcaggacatcaagcttcccagaaagtttgacctgcctctcactgtgatgccttca
gtggagcatgagaaaccagctcgaccggagggccagaaggccatgaactggaaggagagc
ttccagatgggaagcaaaagcagcccaccctccccctatatgggattctctggaaacagc
aaagacagtcgccgaggcacctctgagctagacagacccctgcaggggacactcaccctt
ctgaggtccgtgtttcggaagaaggagaacaggaggaatgagagggcagaggtctctcca
caggtgccccccgtctccctgtacccagccatcctgtcatttaagggagtctggattcat
gaactgaatcaggtcagggaattagatgaaaagttaagactcttcaacgcagggactgag
gacgctgggcaagacaccgtcaacacaaggctcttcaccagcctgggggaaaaccagaca
tccgcatccacacctgaaacagggcaagccgcctcctga

>gi568815581f:9726064_9989702|GENSCAN_predicted_peptide_2|172_aa
MISRRTGQIVLVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEYDVVISTVSPTFI
RSYHVYPEQGNWEASIWKFFFRKLTYGVHPVEVAEEVMRTVRRKKQEVFMANPIPKAAVY
VRTFFPEFFFAVVACGVKEKLNVPEEGEPPTKIEDFLEVASFEMDEQHVRDP

>gi568815581f:9726064_9989702|GENSCAN_predicted_CDS_2|519_bp
atgatctcccggagaacaggccaaatcgtgttagtgaataatatccaagggaagtttgga
atcccgttccgtacgacttacgctgcctccaagcacgcagccctgggcttctttgactgc
ctccgagccgaagtggaggaatacgatgttgtcatcagcaccgtgagcccgactttcatc
cggtcgtaccacgtgtatccagagcaaggaaactgggaagcttccatttggaaattcttt
ttcaggaagctgacctacggcgtgcacccagtagaggtggcggaggaggtgatgcgcacc
gtgcggaggaagaagcaagaggtgtttatggccaaccccatccccaaggccgccgtgtac
gtccgcaccttcttcccggagttctttttcgccgtggtggcctgtggggtgaaggagaag
ctcaatgtcccggaggagggggaacccccaactaagattgaagactttttggaggtggcc
tcatttgagatggacgagcagcatgttagggatccatag

>gi568815581f:9726064_9989702|GENSCAN_predicted_peptide_3|206_aa
MGVMAMLMLPLLLLGISGLLFIYQEVSRLWSKSAVQNKVVVITDAISGLGKECARVFHTG
GARLVLCGKNWERLENLYDALISVADPSKTFTPKLVLLDLSDISCVPDVAKEVLDCYGCV
DILINNASVKVKGPAHKISLELDKKIMDANYFGPITLTKGLLVKGKDSVLRNEEEKGLIT
RLQETQYSVNPFTETGKGRRLSPFNE

>gi568815581f:9726064_9989702|GENSCAN_predicted_CDS_3|621_bp
atgggagtcatggccatgctgatgctccccctgctgctgctgggaatcagcggcctcctc
ttcatttaccaagaggtgtccaggctgtggtcaaagtcagctgtgcagaacaaagtggtg
gtgatcaccgatgccatctcaggactgggcaaggagtgtgctcgggtgttccacacaggt
ggggcaaggctggtgctgtgtggaaagaactgggagaggctagagaacctatatgatgcc
ttgatcagcgtggctgaccccagcaagacattcaccccaaagctggtcctgttggacctc
tcagacatcagctgtgtcccagatgtggcaaaagaagtcctggattgctatggctgtgtg
gacatcctcatcaacaatgccagtgtgaaggtgaaggggcctgcccataagatttctctg
gagctcgacaaaaagatcatggatgccaattactttggccccatcacattgacgaaaggt
ctcttggtcaaaggtaaagattctgtcctcagaaatgaagaagaaaaagggcttatcacc
agactacaagagacccagtattctgtcaaccccttcacagaaacagggaaaggcaggagg
ctgtctccctttaatgagtaa

>gi568815581f:9726064_9989702|GENSCAN_predicted_peptide_4|293_aa
MDRAKQQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNS
SNGRMDNNSQAVLYIWELGDDKFIQRGFHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQG
VLWLSIGGEVLDIVLILTSAILLGSRVSCRSPGFHWLRVDALVAIFMVLAGLLGMVAHMM
YTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCLAVSVSAMSRFTAARLEFTEKQQ
AQNGSRHSQHSFLEPEASESIWKTGAAPCPAEQAFRNVSGHLPPGAPGKVSIC

>gi568815581f:9726064_9989702|GENSCAN_predicted_CDS_4|882_bp
atggacagggccaagcagcagcaggcgctgctcctcctccctgtctgcctcgccctcacc
ttctccctcaccgccgtggtcagcagccactggtgtgaggggacccgacgggtggtgaag
ccactgtgccaggaccagccgggagggcagcactgcattcacttcaaacgggacaacagc
agcaatggcaggatggacaacaatagccaggctgtcctgtacatttgggagctgggtgat
gacaagttcattcagcgggggttccatgtggggctctggcagtcctgcgaggagagcctc
aacggtgaagatgaaaagtgtaggagtttccggagtgtagtgccagctgaagaacaaggt
gttttgtggctgtccatcgggggcgaggtcctggatatcgttctgatactgacaagcgcc
atcctcctgggctccagagtgagttgtcgcagccctgggttccactggctcagggtggat
gccttggtagccatcttcatggtgctggcagggcttctaggcatggtggcccacatgatg
tacacaaccatttttcaaatcactgtgaaccttggaccagaagattggaagcctcagacc
tgggactatggctggtcatattgccttgcctggggttctttcgccctctgcctggctgtg
tcggtctcggccatgagcaggttcacggcagcccgcctggaattcaccgagaagcagcag
gcacagaacggcagtcggcactctcaacacagcttcctggaacccgaggcttcggagagc
atttggaaaacaggagctgctccttgccctgctgaacaagccttcaggaatgtttctgga
cacctcccaccaggcgccccaggcaaggtgtccatatgctag

>gi568815581f:9726064_9989702|GENSCAN_predicted_peptide_5|601_aa
MAVFLLRSMGRVTGSLLEETTRKWAQYKQACLRDLLKEPSESSGRAYRHCLAQGTWQTIE
NATDIWQDDSECSENHSFKQNNPSAPYFLVGLLLFSLRTSCLSNICSLSFKVQCKRLHKA
EEQVFGDQTDIYGHTLVSFIPMVDRYALLSTLQLMYTVGYSFSLISLFLALTLLLFLRKL
HCTRNYIHMNLFASFILRTLAVLVKDVVFYNSYSKRPDNENGWMSYLSEMSTSCRSVQVL
LHYFVGANYLWLLVEGLYLHTLLEPTVLPERRLWPRYLLLGWDPVQASAPALANTISSIS
LKPIFCHCKPHVLIILAASPSIWWVLDKHIQCTLMAYILDPERFLLTRLSVQMTFGTLEI
QMAFGTVEIQMAFRTVEITAKHLLPGQLTAELPLVYIELMELMAEPSLTLKFTAMWNSSL
TYPILLFFSRLAKSTLVLIPLLGVHEILFSFITDDQVEGFAKLIRLFIQLTLSSFHGFLV
ALQYGFANGEVKAELRKYWVRFLLARHSGCRACVLGKDFRFLGKCPKKLSEGDGAEKLRK
LQPSLNSGRLLHLAMRGLGELGAQPQQDHARWPRGSSLSECSEGDVTMANTMEEILEESE
I

>gi568815581f:9726064_9989702|GENSCAN_predicted_CDS_5|1806_bp
atggctgtcttcctccttcgttccatgggcagggttacaggatccctccttgaggaaacg
actcggaagtgggctcagtacaaacaggcatgtctgagagacttactcaaggaaccttct
gagagctcaggaagggcctacagacactgcttggctcaggggacttggcagacgatagag
aacgccacggatatttggcaggatgactccgaatgctccgagaaccacagcttcaagcaa
aacaatccttctgcaccatactttctcgttggactcttgctcttctccctgaggacctcc
tgtttgtccaacatctgctcactttccttcaaagtgcaatgcaagaggctgcacaaagcg
gaggaacaggtgtttggggatcagacagatatctacggccacaccttggtttctttcatt
ccgatggtggatcgttatgccttgctgtcaaccttgcagctgatgtacaccgtgggatac
tccttctctcttatctccctcttcctggctctcaccctcctcttgtttcttcgaaaactc
cactgcacgcgcaactacatccacatgaacttgtttgcttctttcatcctgagaaccctg
gctgtactggtgaaggacgtcgtcttctacaactcttactccaagaggcctgacaatgag
aatgggtggatgtcctacctgtcagagatgtccacctcctgccgctcagtccaggttctc
ttgcattactttgtgggtgccaattacttatggctgctggttgaaggcctctacctccac
acgctgctggagcccacagtgcttcctgagaggcggctgtggcccagatacctgctgttg
ggttgggatcctgtgcaggcttctgctccagccctagccaacaccatttcaagtatctct
ttaaaacccattttctgccactgtaagccccatgttctgatcatcctggcagccagccca
agcatatggtgggttcttgataaacatattcagtgcacactcatggcctacattctggac
cctgaaaggttcttgctaaccagactttcagttcagatgacctttgggactttggagatt
cagatggcctttgggacagtggagattcagatggcctttaggacagtggagatcacagct
aagcatttactacctggccagctaactgctgaattgcccctggtttacattgaactgatg
gaactgatggccgagcccagcctgaccttgaagttcacagctatgtggaattcgtcactt
acttacccaattctgctctttttttcaagattggcaaaatcaacactggtcctcattcct
ttattgggcgttcatgagatcctcttctctttcatcactgatgatcaagttgaaggattt
gcaaaacttatacgacttttcattcagttgacactgagctcctttcatgggttcctggtg
gccttgcagtatggttttgccaatggagaggtgaaggctgagctgcggaaatactgggtc
cgcttcttgctagcccgccactcaggctgcagagcctgtgtcctggggaaggacttccgg
ttcctaggaaaatgtcccaagaagctctcggaaggagatggcgctgagaagcttcggaag
ctgcagccctcacttaacagtgggcggctcctacatctagccatgcgaggtcttggggag
ctgggcgcccagccccaacaggaccatgcacgctggccccggggcagcagcctgtccgag
tgcagtgagggggatgtcaccatggccaacaccatggaggagattctggaagagagtgag
atctag

>gi568815581f:9726064_9989702|GENSCAN_predicted_peptide_6|209_aa
MGNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDT
DPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKN
EVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDGSSKGHGKGDKLTEKE
FIEGTLANKEILRLIQFEPQKVKEKMKNA

>gi568815581f:9726064_9989702|GENSCAN_predicted_CDS_6|630_bp
atggggaacagcaaaagtggggccctgtccaaggagatcctggaggagctgcagctgaac
accaagttctcggaggaggagctgtgctcctggtaccagtccttcctgaaggactgtccc
accggccgcatcacccagcagcagttccagagcatctacgccaagttcttccccgacacc
gaccccaaggcctacgcccagcatgtgttccgcagcttcgattccaacctcgacggcacc
ctggacttcaaggagtacgtcatcgccctgcacatgaccaccgcgggcaagaccaaccag
aagctggagtgggccttctccctctacgacgtggacggtaacgggaccatcagcaagaat
gaagtgctggagatcgtcatggctattttcaaaatgatcactcccgaggacgtgaagctc
cttccagacgatgaaaacacgccggaaaagcgagccgagaagatctggaagtactttgga
aagaatgatgatgggagctccaagggtcatgggaaaggagataaacttacagagaaagaa
ttcattgaggggacactggccaataaggaaattctgcgactgatccagtttgagcctcaa
aaagtgaaggaaaagatgaagaacgcctga

>gi568815581f:9726064_9989702|GENSCAN_predicted_peptide_7|395_aa
MAEDRGKSYAGLDSNFHSSVYYSLVTLDSFTSASPNFMICKMELMPFNLLGLEPEWGEKM
SNMENSFDDVSCLSPQNLGSSSPSKKQSKENTITINCVTFPHPDTMPEQQLLKPTEWSYC
DYFWADKKDPQGNGTVAGFELLLQKQLKGKQMQKEMSEFIRERIKIEEDYAKNLAKLSQN
SLASQEEGSLGEAWAQVKKSLADEAEVHLKFSAKLHSEVEKPLMNFRENFKKDMKKCDHH
IADLRKQLASRYASVEKARKALTERQRDLEMKTQQLEIKLSNKTEEDIKKARRKSTQAGD
DLMRCVDLYNQAQSKWFEEMVTTTLELERLEVERVEMIRQHLCQYTQLRHETDMFNQSTV
EPVDQLLRKVDPAKDRELWVREHKTGNIRPVDMEI

>gi568815581f:9726064_9989702|GENSCAN_predicted_CDS_7|1188_bp
atggcggaagatagaggaaagagttatgcaggcttggattctaatttccactcctctgtt
tactatagccttgtgaccctggacagttttacttctgcaagccccaatttcatgatctgc
aaaatggagttgatgccatttaacttgctggggttggaacctgaatggggggaaaaaatg
tccaatatggagaacagctttgacgatgtttcttgcctctctccccagaacctgggatcc
tcatcgccaagcaaaaagcagagcaaggaaaacaccatcacaataaactgtgtgacgttc
cctcacccagacacgatgccggaacagcagctgctgaaaccaaccgagtggagctactgc
gactacttctgggctgataagaaggacccccaaggcaacggcaccgtggctgggtttgaa
ctactgctccagaaacagctgaagggcaaacaaatgcagaaggaaatgtcagaattcatc
cgggaaaggataaagattgaagaagactatgcgaagaacttagctaagctctctcagaac
tccttggcttcacaggaggaaggctccttgggagaggcgtgggcccaggtgaagaagagc
ctggcggacgaagcagaagttcacctcaagttctctgccaagcttcacagcgaggtggag
aagcccctgatgaacttccgtgagaacttcaagaaagacatgaagaagtgcgaccaccac
attgccgaccttcgcaagcagctcgccagccgctatgcctcggtggagaaggcccggaaa
gccctcacagagcggcagagagacctggagatgaagacccagcagctggagatcaagctg
agcaacaagacagaggaggacatcaagaaggcgcggagaaagtccacacaggctggagac
gacctcatgcgctgtgtggatctctacaaccaggcccagtccaaatggtttgaagagatg
gtgaccaccacattggagctagagcggctggaggtggagagggtagagatgatccggcag
cacctgtgccagtacacgcagctgcggcatgaaacagacatgttcaaccaaagcacagtc
gagcccgtggatcagctgcttcgaaaagtggacccggccaaagacagggagctgtgggtc
agagagcacaagacgggcaacatccgccctgtggacatggagatctag

>gi568815581f:9726064_9989702|GENSCAN_predicted_peptide_8|145_aa
MAVLEGIEKPEMEETLGAAESRHKPRKVDEPQQEATGGQRLVGQVPYLRGRTSRGFDPQG
DKVSRCIKSLSLSSAALCAGPLKGAEKGGEMGGEVNGYHASGTPAHPPETAHMSVRKSTG
DSQVLVCDVPPPVSIWSHCSSPTYE

>gi568815581f:9726064_9989702|GENSCAN_predicted_CDS_8|438_bp
atggctgtactggaaggcattgaaaaaccagagatggaggaaactctgggggcagcagag
agccggcacaagccaagaaaagtggacgagccccagcaggaggccactgggggccagagg
cttgtaggccaggtgccgtatttgagagggcgaaccagccgtggcttcgaccctcaagga
gataaggtgtcaaggtgcatcaagagcctctctctgtccagcgctgcactgtgtgctggg
cccctaaagggggctgagaaaggtggggagatgggtggagaagtgaatggataccacgca
tcagggaccccagcgcaccctccagagactgcccacatgagtgtccgaaaatccaccggt
gattcccaggtcctggtgtgtgatgttcccccaccggtgtccatatggtcccattgttca
tctcccacttatgagtga