GENSCAN 1.0	Date run:  6-Nov-116	Time: 14:06:52

Sequence gi568815582f:27240204_27463827 : 223624 bp : 46.75% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -   2186   2181    6                               1.05
 1.04 Term -   4735   4656   80  2  2   51   42   114 0.060   1.03
 1.03 Intr -  17361  17232  130  0  1   68   84   226 0.022  20.47
 1.02 Intr -  28112  27960  153  2  0   -5   98   128 0.458   4.77
 1.01 Init -  39999  39982   18  0  0   86   86    24 0.305   0.96
 1.00 Prom -  42669  42630   40                              -4.36

 2.00 Prom +  42703  42742   40                              -1.96
 2.01 Init +  47185  47301  117  0  0  103   94     0 0.181   2.30
 2.02 Term +  50042  50143  102  1  0  106   47    68 0.487   2.78
 2.03 PlyA +  50264  50269    6                               1.05

 3.03 PlyA -  51612  51607    6                               1.05
 3.02 Term -  64157  64053  105  2  0   88   43   105 0.567   4.41
 3.01 Init -  66524  65742  783  2  0   53   14  1069 0.142  88.70
 3.00 Prom -  67684  67645   40                              -2.96

 4.02 PlyA -  68869  68864    6                               1.05
 4.01 Sngl -  84647  84270  378  2  0  103   42   127 0.918   5.83
 4.00 Prom -  88517  88478   40                              -4.46

 5.00 Prom +  95678  95717   40                              -4.36
 5.01 Init + 100001 100070   70  1  1   56  119   100 0.857   9.11
 5.02 Intr + 101918 102056  139  0  1  102   65   157 0.910  14.32
 5.03 Intr + 104666 104817  152  2  2   96   89   208 0.997  21.51
 5.04 Intr + 106264 106415  152  2  2   76   76   170 0.916  14.48
 5.05 Intr + 112337 112423   87  1  0   98   76    44 0.566   4.37
 5.06 Intr + 112595 112650   56  1  2   80   96    37 0.582   1.48
 5.07 Intr + 114817 114986  170  1  2   42   79    53 0.455  -0.61
 5.08 Intr + 115605 115704  100  1  1   99   89   144 0.975  14.77
 5.09 Intr + 118713 118791   79  0  1  120   91    39 0.737   6.95
 5.10 Intr + 120563 120612   50  1  2   96   52    31 0.474  -2.22
 5.11 Term + 122049 123627 1579  0  1  102   43   894 0.806  76.08
 5.12 PlyA + 124347 124352    6                               1.05

 6.00 Prom + 140558 140597   40                              -5.86
 6.01 Init + 142872 142919   48  2  0  111   92    38 0.853   5.77
 6.02 Intr + 148581 148737  157  2  1   57   65    99 0.576   4.08
 6.03 Term + 148853 148884   32  0  2  128   35    -3 0.319  -3.58
 6.04 PlyA + 149186 149191    6                               1.05

 7.04 PlyA - 149837 149832    6                               1.05
 7.03 Term - 162391 162006  386  2  2   86   54   127 0.502   4.15
 7.02 Intr - 164614 164591   24  2  0   96   72    33 0.337   0.50
 7.01 Init - 168599 168581   19  2  1   89   98    18 0.598   3.23
 7.00 Prom - 170270 170231   40                              -3.66

 8.00 Prom + 172688 172727   40                              -3.96
 8.01 Init + 189869 189917   49  1  1   94  107   139 0.998  15.51
 8.02 Intr + 194066 194246  181  0  1   99  119   164 0.776  19.53
 8.03 Intr + 196032 196085   54  0  0   85  103    37 0.887   2.99
 8.04 Intr + 197285 197484  200  2  2   62   73   270 0.998  21.89
 8.05 Intr + 202801 202913  113  2  2   80   65   130 0.612  10.00
 8.06 Intr + 204339 204516  178  2  1   82   73   158 0.915  13.19
 8.07 Intr + 204974 205073  100  0  1  112   78   -13 0.879  -0.73
 8.08 Intr + 205804 205885   82  1  1  121  105   116 0.999  16.24
 8.09 Term + 208331 209080  750  1  0  136   39   634 0.992  56.75
 8.10 PlyA + 209851 209856    6                               1.05

 9.04 PlyA - 210101 210096    6                               1.05
 9.03 Term - 221359 221147  213  1  0  106   48   228 0.849  17.83
 9.02 Intr - 222283 222091  193  0  1   91   64   291 0.943  26.49
 9.01 Intr - 223389 223338   52  1  1  125   98    44 0.973   7.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582f:27240204_27463827|GENSCAN_predicted_peptide_1|126_aa
MAILPKPLPTTLFVPPPSVLPSVLCTEFLTLYKSAAAYVTAPRPDAFKIEEFSEFGKGST
RRMGVMTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDQNSQSMVTTCTTHLPRFVDG
YVLSVS

>gi568815582f:27240204_27463827|GENSCAN_predicted_CDS_1|381_bp
atggccatactgcccaagcctttgccgaccaccctctttgtcccgccgccctccgtgctc
ccctctgttttgtgtacggagtttcttactttgtacaagtccgcagccgcttatgttaca
gccccgaggccagatgcgtttaaaatcgaggagttctcggagtttggaaagggcagcaca
aggagaatgggcgtcatgactgatgtccaccggcgcttcctccagttgctgatgacccat
ggcgtgctagaggaatgggacgtgaagcgcttgcagacgcactgctacaaggtccatgac
caaaattcacaaagcatggtcaccacttgtaccacacatcttcctcggttcgtggacgga
tacgtcttgagtgtcagctga

>gi568815582f:27240204_27463827|GENSCAN_predicted_peptide_2|72_aa
MVDLHPKWSCFRLTVGDIQRMSQATKNRESSLEDIALLQTDCGTAHEAKHLLVDQEASPI
HGLSRQPAIVLI

>gi568815582f:27240204_27463827|GENSCAN_predicted_CDS_2|219_bp
atggtggatctgcatccaaaatggagttgctttcgcctcacagtaggcgacatacagagg
atgtcacaagcaacaaaaaacagggaaagcagcttggaggatatagctttacttcagaca
gactgcggaactgcccatgaggccaagcacctattagtagaccaagaagcatcacccatc
catggcctaagtcggcagccagctattgttctcatctga

>gi568815582f:27240204_27463827|GENSCAN_predicted_peptide_3|295_aa
MMLTVMVVVVMMMVMMVMVAVVTMLTVMMVMVAVVTMLTVMMVMVAVVTMLTVMMVMVAV
VTMLTVMMVMVAVVTMLTVMMVMVAVVTMLMVMMVMVAVVMMMLMVVVVMLMVMMVVVVM
MLMVMMVVVVMMLMVMMVMVGVVMMTVMMVMVAVVMMLMVMVMVAVVMMMLMVVVVMMLM
VMMVVVVVMLTVMMVMVGVVMMTVMMVMVVVVMVLMVMMVVMMLMVMMAMVVVIMVVVAV
VMMIVMVAVMMLMVVVVVMMMPAEIPLSLKACDFLSGAFFSLPDKLLPVYPKHIG

>gi568815582f:27240204_27463827|GENSCAN_predicted_CDS_3|888_bp
atgatgttgacggtgatggtggtggtggtgatgatgatggtgatgatggtgatggtggcg
gtggtgacgatgttgacggtgatgatggtgatggtggcggtggtgacgatgttgacggtg
atgatggtgatggtggcggtggtgacgatgttgacggtgatgatggtgatggtggcggtg
gtgacgatgttgacggtgatgatggtgatggtggcggtggtgacgatgttgacggtgatg
atggtgatggtggcggtggtgacgatgttgatggtgatgatggtgatggtggcggtggtg
atgatgatgttgatggtggtggtggtgatgttgatggtgatgatggtggtggtggtgatg
atgttgatggtgatgatggtggtggtggtgatgatgttgatggtgatgatggtgatggtg
ggggtggtgatgatgacggtgatgatggtgatggtggcggtggtgatgatgttgatggtg
atggtgatggtggcagtggtgatgatgatgttgatggtggtggtggtgatgatgttgatg
gtgatgatggtggtggtggtggtgatgttgacggtgatgatggtgatggtgggggtggtg
atgatgacggtgatgatggtgatggtggtggtggtgatggtgttgatggtgatgatggtg
gtgatgatgttgatggtgatgatggcgatggtcgtggtgataatggtagtggtggcagtg
gtgatgatgatagtgatggtggcggtgatgatgttgatggtggtagtggtggtgatgatg
atgcctgctgaaatccccctctccttgaaggcctgtgacttcctgagtggagccttcttc
agccttccagacaagctccttcctgtttacccgaagcacattggatag

>gi568815582f:27240204_27463827|GENSCAN_predicted_peptide_4|125_aa
MESREEKQICWGRPRAPAHCGHFESTQSTGNSIRDPGSQACLQKIPEAQRRKQSLRKLCP
EATYPGTAASLASIFLQPVILLYFSAIFVAYCTLGPYVFGAHIPYCKASSHKASVDPAHS
HLPRA

>gi568815582f:27240204_27463827|GENSCAN_predicted_CDS_4|378_bp
atggagagccgagaagagaagcagatttgctggggaagaccacgcgctccggcgcactgt
ggacactttgagtccacacagtcaacaggcaactccatccgggatcctggaagccaggcc
tgtcttcagaagattccagaggcccaaaggaggaaacagagcctgaggaaactgtgtcca
gaagccacctacccaggaacagcagccagcctggcctccatctttctgcaacctgttatc
ttgctttatttctctgcaatctttgtggcatattgcacactcgggccttatgtgtttggt
gctcatatcccctactgcaaggccagctcacacaaggccagtgtcgatcccgctcacagc
catctccccagagcctag

>gi568815582f:27240204_27463827|GENSCAN_predicted_peptide_5|877_aa
MGWLCSGLLFPVSCLVLLQVASSGNMKVLQEPTCVSDYMSISTCEWKMNGPTNCSTELRL
LYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEH
VKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYL
EPSLRIAASTLKSGISYRARDASNGNPAIRYTCRGVSASKYLLSSSYMASPVLDTGESAM
NKADRNPHSCGADILEGETKSKHIKKERNHMDLDDTYREPFEQHLLLGVSVSCIVILAVC
LLCYVSITKIKKEWWDQIPNPARSRLVAIIIQDAQGSQWEKRSRGQEPAKCPHWKNCLTK
LLPCFLEHNMKRDEDPHKAAKEMPFQGSGKSAWCPVEISKTVLWPESISVVRCVELFEAP
VECEEEEEVEEEKGSFCASPESSRDDFQEGREGIVARLTESLFLDLLGEENGGFCQQDMG
ESCLLPPSGSTSAHMPWDEFPSAGPKEAPPWGKEQPLHLEPSPPASPTQSPDNLTCTETP
LVIAGNPAYRSFSNSLSQSPCPRELGPDPLLARHLEEVEPEMPCVPQLSEPTTVPQPEPE
TWEQILRRNVLQHGAAAAPVSAPTSGYQEFVHAVEQGGTQASAVVGLGPPGEAGYKAFSS
LLASSAVSPEKCGFGASSGEEGYKPFQDLIPGCPGDPAPVPVPLFTFGLDREPPRSPQSS
HLPSSSPEHLGLEPGEKVEDMPKPPLPQEQATDPLVDSLGSGIVYSALTCHLCGHLKQCH
GQEDGGQTPVMASPCCGCCCGDRSSPPTTPLRAPDPSPGGVPLEASLCPASLAPSGISEK
SKSSSSFHPAPGNAQSSSQTPKIVNFVSVGPTYMRVS

>gi568815582f:27240204_27463827|GENSCAN_predicted_CDS_5|2634_bp
atggggtggctttgctctgggctcctgttccctgtgagctgcctggtcctgctgcaggtg
gcaagctctgggaacatgaaggtcttgcaggagcccacctgcgtctccgactacatgagc
atctctacttgcgagtggaagatgaatggtcccaccaattgcagcaccgagctccgcctg
ttgtaccagctggtttttctgctctccgaagcccacacgtgtatccctgagaacaacgga
ggcgcggggtgcgtgtgccacctgctcatggatgacgtggtcagtgcggataactataca
ctggacctgtgggctgggcagcagctgctgtggaagggctccttcaagcccagcgagcat
gtgaaacccagggccccaggaaacctgacagttcacaccaatgtctccgacactctgctg
ctgacctggagcaacccgtatccccctgacaattacctgtataatcatctcacctatgca
gtcaacatttggagtgaaaacgacccggcagatttcagaatctataacgtgacctaccta
gaaccctccctccgcatcgcagccagcaccctgaagtctgggatttcctacagggcacgg
gatgcctctaatggcaatcctgccattagatacacctgccgtggtgtatctgccagcaaa
tatttgctgagttcctcctacatggctagccctgtgctagacactggggaatcggcgatg
aacaaagcagatagaaatccccactcttgtggagctgacattctggagggagagacaaaa
agcaaacatataaagaaagaaagaaatcacatggatctggatgacacctacagggagccc
ttcgagcagcacctcctgctgggcgtcagcgtttcctgcattgtcatcctggccgtctgc
ctgttgtgctatgtcagcatcaccaagattaagaaagaatggtgggatcagattcccaac
ccagcccgcagccgcctcgtggctataataatccaggatgctcaggggtcacagtgggag
aagcggtcccgaggccaggaaccagccaagtgcccacactggaagaattgtcttaccaag
ctcttgccctgttttctggagcacaacatgaaaagggatgaagatcctcacaaggctgcc
aaagagatgcctttccagggctctggaaaatcagcatggtgcccagtggagatcagcaag
acagtcctctggccagagagcatcagcgtggtgcgatgtgtggagttgtttgaggccccg
gtggagtgtgaggaggaggaggaggtagaggaagaaaaagggagcttctgtgcatcgcct
gagagcagcagggatgacttccaggagggaagggagggcattgtggcccggctaacagag
agcctgttcctggacctgctcggagaggagaatgggggcttttgccagcaggacatgggg
gagtcatgccttcttccaccttcgggaagtacgagtgctcacatgccctgggatgagttc
ccaagtgcagggcccaaggaggcacctccctggggcaaggagcagcctctccacctggag
ccaagtcctcctgccagcccgacccagagtccagacaacctgacttgcacagagacgccc
ctcgtcatcgcaggcaaccctgcttaccgcagcttcagcaactccctgagccagtcaccg
tgtcccagagagctgggtccagacccactgctggccagacacctggaggaagtagaaccc
gagatgccctgtgtcccccagctctctgagccaaccactgtgccccaacctgagccagaa
acctgggagcagatcctccgccgaaatgtcctccagcatggggcagctgcagcccccgtc
tcggcccccaccagtggctatcaggagtttgtacatgcggtggagcagggtggcacccag
gccagtgcggtggtgggcttgggtcccccaggagaggctggttacaaggccttctcaagc
ctgcttgccagcagtgctgtgtccccagagaaatgtgggtttggggctagcagtggggaa
gaggggtataagcctttccaagacctcattcctggctgccctggggaccctgccccagtc
cctgtccccttgttcacctttggactggacagggagccacctcgcagtccgcagagctca
catctcccaagcagctccccagagcacctgggtctggagccgggggaaaaggtagaggac
atgccaaagcccccacttccccaggagcaggccacagacccccttgtggacagcctgggc
agtggcattgtctactcagcccttacctgccacctgtgcggccacctgaaacagtgtcat
ggccaggaggatggtggccagacccctgtcatggccagtccttgctgtggctgctgctgt
ggagacaggtcctcgccccctacaacccccctgagggccccagacccctctccaggtggg
gttccactggaggccagtctgtgtccggcctccctggcaccctcgggcatctcagagaag
agtaaatcctcatcatccttccatcctgcccctggcaatgctcagagctcaagccagacc
cccaaaatcgtgaactttgtctccgtgggacccacatacatgagggtctcttag

>gi568815582f:27240204_27463827|GENSCAN_predicted_peptide_6|78_aa
MGTPPHTPFSSLASLQVHAIGKLEVSESRGPGSSPQLTTNEVLEKKYPRFLVSPLGQVGD
MFYIVSQRGLFPKSMTYP

>gi568815582f:27240204_27463827|GENSCAN_predicted_CDS_6|237_bp
atggggaccccgccccacacgccgttcagctctttagcctcgctccaggtgcatgcaatc
ggcaagctggaagtgtcagagagtcgtggccctggaagcagccctcaactaacaacaaat
gaagtcctggaaaagaaatatcccagatttcttgtttctcctttgggacaagttggagac
atgttctatattgtctcccagagaggattatttcccaaatctatgacttatccttaa

>gi568815582f:27240204_27463827|GENSCAN_predicted_peptide_7|142_aa
MGLKVKDAATELQKEIHSVCWGQSDGLLGVAAGFSVGVTDEGLRKQAEAWGENPHPARVT
NQAVIRPVTLMTGSWASRQVSHRAADRGKRRQGRYQAAAAGMHGPQTDRHSCVAVSHTQG
EAGRGPDAELTVTQQRDASGSV

>gi568815582f:27240204_27463827|GENSCAN_predicted_CDS_7|429_bp
atggggctgaaagtgaaagatgcagcaactgagctgcagaaagaaatccattccgtgtgc
tgggggcagtctgatgggcttctgggggtggcagctgggttcagcgtgggggtgacagat
gagggtctgagaaagcaggcagaggcctggggtgagaatccacacccagcccgagtcacc
aatcaggctgtcataagacctgtcactctgatgacgggcagctgggcctccaggcaggtg
tcccacagagcagcagacagaggaaagagacggcaaggaaggtaccaggcggccgcagca
gggatgcacgggccgcagacagacagacacagctgcgtggctgtcagccacactcaggga
gaggcaggcagagggccagacgccgagcttacggtcactcagcagagagacgccagtggg
tctgtctga

>gi568815582f:27240204_27463827|GENSCAN_predicted_peptide_8|568_aa
MPRGWAAPLLLLLLQGALEGMERKLCSPKPPPTKASLPTDPPGWGCPDLVCYTDYLQTVI
CILEMWNLHPSTLTLTWILSNNTGCYIKDRTLDLRQDQYEELKDEATSCSLHRSAHNATH
ATYTCHMDVFHFMADDIFSVNITDQSGNYSQECGSFLLAESRQYNISWRSDYEDPAFYML
KGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSY
QGTWSEWSDPVIFQTQSEELKEGWNPHLLLLLLLVIVFIPAFWSLKTHPLWRLWKKIWAV
PSPERFFMPLYKGCSGDFKKWVGAPFTGSSLELGPWSPEVPSTLEVYSCHPPRSPAKRLQ
LTELQEPAELVESDGVPKPSFWPTAQNSGGSAYSEERDRPYGLVSIDTVTVLDAEGPCTW
PCSCEDDGYPALDLDAGLEPSPGLEDPLLDAGTTVLSCGCVSAGSPGLGGPLGSLLDRLK
PPLADGEDWAGGLPWGGRSPGGVSESEAGSPLAGLDMDTFDSGFVGSDCSSPVECDFTSP
GDEGPPRSYLRQWVVIPPPLSSPGPQAS

>gi568815582f:27240204_27463827|GENSCAN_predicted_CDS_8|1707_bp
atgccgcgtggctgggccgcccccttgctcctgctgctgctccagggagccctcgagggg
atggagaggaagctctgcagtcccaagccaccccccaccaaggcctctctccccactgac
cctccaggctggggctgccccgacctcgtctgctacaccgattacctccagacggtcatc
tgcatcctggaaatgtggaacctccaccccagcacgctcacccttacctggatactttct
aataatactgggtgctatatcaaggacagaacactggacctcaggcaagaccagtatgaa
gagctgaaggacgaggccacctcctgcagcctccacaggtcggcccacaatgccacgcat
gccacctacacctgccacatggatgtattccacttcatggccgacgacattttcagtgtc
aacatcacagaccagtctggcaactactcccaggagtgtggcagctttctcctggctgag
agcagacagtataatatctcctggcgctcagattacgaagaccctgccttctacatgctg
aagggcaagcttcagtatgagctgcagtacaggaaccggggagacccctgggctgtgagt
ccgaggagaaagctgatctcagtggactcaagaagtgtctccctcctccccctggagttc
cgcaaagactcgagctatgagctgcaggtgcgggcagggcccatgcctggctcctcctac
caggggacctggagtgaatggagtgacccggtcatctttcagacccagtcagaggagtta
aaggaaggctggaaccctcacctgctgcttctcctcctgcttgtcatagtcttcattcct
gccttctggagcctgaagacccatccattgtggaggctatggaagaagatatgggccgtc
cccagccctgagcggttcttcatgcccctgtacaagggctgcagcggagacttcaagaaa
tgggtgggtgcacccttcactggctccagcctggagctgggaccctggagcccagaggtg
ccctccaccctggaggtgtacagctgccacccaccacggagcccggccaagaggctgcag
ctcacggagctacaagaaccagcagagctggtggagtctgacggtgtgcccaagcccagc
ttctggccgacagcccagaactcggggggctcagcttacagtgaggagagggatcggcca
tacggcctggtgtccattgacacagtgactgtgctagatgcagaggggccatgcacctgg
ccctgcagctgtgaggatgacggctacccagccctggacctggatgctggcctggagccc
agcccaggcctagaggacccactcttggatgcagggaccacagtcctgtcctgtggctgt
gtctcagctggcagccctgggctaggagggcccctgggaagcctcctggacagactaaag
ccaccccttgcagatggggaggactgggctgggggactgccctggggtggccggtcacct
ggaggggtctcagagagtgaggcgggctcacccctggccggcctggatatggacacgttt
gacagtggctttgtgggctctgactgcagcagccctgtggagtgtgacttcaccagcccc
ggggacgaaggacccccccggagctacctccgccagtgggtggtcattcctccgccactt
tcgagccctggaccccaggccagctaa

>gi568815582f:27240204_27463827|GENSCAN_predicted_peptide_9|152_aa
XFTESFGAANISQAARERDCESVCFIGRPWRVVDGHLNLPVCKGMMEAMLYHIMTRPGIP
ESSLLRHYQGVLQPVAVLELLQGLESLGCIRKRWLRKPRPVSLFSTPVVEEVEVPSSLDE
SPMAFYEPTLDCTLRLGRVFPHEVNWNKWIHL

>gi568815582f:27240204_27463827|GENSCAN_predicted_CDS_9|459_bp
nggttcacagagagtttcggagctgccaacatctcccaggcagcacgggaaagggactgt
gagagtgtctgcttcatcggccggccgtggcgtgtcgtggatggccacctgaaccttcct
gtatgcaagggtatgatggaggccatgctgtaccacatcatgaccaggcctggcatcccc
gagagctccctgctgcgccactaccagggggtcctgcagcccgtcgccgtgctggagttg
ctccagggcctggagtccctcggctgcatccggaagcgctggctgagaaagccaaggcct
gtctcgctcttctctacacccgtggtggaagaggtggaagtgccctccagcctggacgag
agccccatggctttctatgagcccaccttggactgtaccctccggctgggccgtgtgttc
ccccacgaggtcaactggaacaagtggatccacctctag