Result of FASTA (omim) for pF1KE0909
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0909, 225 aa
  1>>>pF1KE0909     225 - 225 aa - 225 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9231+/-0.000263; mu= 11.0212+/- 0.016
 mean_var=75.0562+/-15.260, 0's: 0 Z-trim(119.5): 15  B-trim: 187 in 1/53
 Lambda= 0.148041
 statistics sampled from 35018 (35033) to 35018 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.379), width:  16
 Scan time:  3.580

The best scores are:                                      opt bits E(92320)
NP_001167 (OMIM: 602844) rho GDP-dissociation inhi ( 225) 1518 332.9 2.9e-91
NP_001172006 (OMIM: 601925,615244) rho GDP-dissoci ( 204)  793 178.0 1.1e-44
NP_004300 (OMIM: 601925,615244) rho GDP-dissociati ( 204)  793 178.0 1.1e-44
NP_001308351 (OMIM: 602843) rho GDP-dissociation i ( 201)  763 171.6 9.3e-43
NP_001308349 (OMIM: 602843) rho GDP-dissociation i ( 201)  763 171.6 9.3e-43
XP_024304747 (OMIM: 602843) rho GDP-dissociation i ( 201)  763 171.6 9.3e-43
NP_001308350 (OMIM: 602843) rho GDP-dissociation i ( 201)  763 171.6 9.3e-43
NP_001166 (OMIM: 602843) rho GDP-dissociation inhi ( 201)  763 171.6 9.3e-43
NP_001308352 (OMIM: 602843) rho GDP-dissociation i ( 201)  763 171.6 9.3e-43
NP_001288170 (OMIM: 601925,615244) rho GDP-dissoci ( 235)  625 142.1 7.9e-34
NP_001288169 (OMIM: 601925,615244) rho GDP-dissoci ( 235)  625 142.1 7.9e-34
NP_001288172 (OMIM: 601925,615244) rho GDP-dissoci ( 249)  563 128.9 8.1e-30
XP_011521876 (OMIM: 601925,615244) rho GDP-dissoci ( 249)  563 128.9 8.1e-30
NP_001288171 (OMIM: 601925,615244) rho GDP-dissoci ( 337)  491 113.6 4.5e-25
NP_001172007 (OMIM: 601925,615244) rho GDP-dissoci ( 160)  456 106.0 4.1e-23


>>NP_001167 (OMIM: 602844) rho GDP-dissociation inhibito  (225 aa)
 initn: 1518 init1: 1518 opt: 1518  Z-score: 1760.0  bits: 332.9 E(92320): 2.9e-91
Smith-Waterman score: 1518; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLGLDACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFV
              130       140       150       160       170       180

              190       200       210       220     
pF1KE0 TPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
              190       200       210       220     

>>NP_001172006 (OMIM: 601925,615244) rho GDP-dissociatio  (204 aa)
 initn: 792 init1: 792 opt: 793  Z-score: 923.8  bits: 178.0 E(92320): 1.1e-44
Smith-Waterman score: 793; 61.1% identity (83.2% similar) in 190 aa overlap (36-225:15-204)

          10        20        30        40        50        60     
pF1KE0 ACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPD
                                     :...  ::   .:. :..::. ::..:: :
NP_001                 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKD
                               10        20        30        40    

          70        80        90       100       110       120     
pF1KE0 DRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVL
       :.:: :::..::: .  ..::..::: :: :::.  .::::. .::::::  .: : :::
NP_001 DESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVL
           50        60        70        80        90       100    

         130       140       150       160       170       180     
pF1KE0 KEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEE
       ::::.::.::::.:.::::::.: ..::::.:...::: :::::::: :.::::.:::::
NP_001 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEE
          110       120       130       140       150       160    

         190       200       210       220     
pF1KE0 APRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       ::.: :.:: : . : :::::.: ::::::.: : .::::
NP_001 APKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD
          170       180       190       200    

>>NP_004300 (OMIM: 601925,615244) rho GDP-dissociation i  (204 aa)
 initn: 792 init1: 792 opt: 793  Z-score: 923.8  bits: 178.0 E(92320): 1.1e-44
Smith-Waterman score: 793; 61.1% identity (83.2% similar) in 190 aa overlap (36-225:15-204)

          10        20        30        40        50        60     
pF1KE0 ACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPD
                                     :...  ::   .:. :..::. ::..:: :
NP_004                 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKD
                               10        20        30        40    

          70        80        90       100       110       120     
pF1KE0 DRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVL
       :.:: :::..::: .  ..::..::: :: :::.  .::::. .::::::  .: : :::
NP_004 DESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVL
           50        60        70        80        90       100    

         130       140       150       160       170       180     
pF1KE0 KEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEE
       ::::.::.::::.:.::::::.: ..::::.:...::: :::::::: :.::::.:::::
NP_004 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEE
          110       120       130       140       150       160    

         190       200       210       220     
pF1KE0 APRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       ::.: :.:: : . : :::::.: ::::::.: : .::::
NP_004 APKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD
          170       180       190       200    

>>NP_001308351 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 757 init1: 736 opt: 763  Z-score: 889.3  bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)

               10        20        30         40           50      
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
                                     : .: : :.:  :. .    .:. : .:::
NP_001                             MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
                                           10        20        30  

         60        70        80        90       100       110      
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
        :....: ::.:: :::..:::  : ..::. ::: ::::::. :.::::..::::::: 
NP_001 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
             40        50        60        70        80        90  

        120       130       140       150       160       170      
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
       .:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...:::::::  .:
NP_001 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
            100       110       120       130       140       150  

        180       190       200       210       220     
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       :::.:::::::.: :.:: :   :.:::::.  ::::::.: : ..: .
NP_001 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
            160       170       180       190       200 

>>NP_001308349 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 757 init1: 736 opt: 763  Z-score: 889.3  bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)

               10        20        30         40           50      
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
                                     : .: : :.:  :. .    .:. : .:::
NP_001                             MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
                                           10        20        30  

         60        70        80        90       100       110      
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
        :....: ::.:: :::..:::  : ..::. ::: ::::::. :.::::..::::::: 
NP_001 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
             40        50        60        70        80        90  

        120       130       140       150       160       170      
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
       .:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...:::::::  .:
NP_001 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
            100       110       120       130       140       150  

        180       190       200       210       220     
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       :::.:::::::.: :.:: :   :.:::::.  ::::::.: : ..: .
NP_001 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
            160       170       180       190       200 

>>XP_024304747 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 757 init1: 736 opt: 763  Z-score: 889.3  bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)

               10        20        30         40           50      
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
                                     : .: : :.:  :. .    .:. : .:::
XP_024                             MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
                                           10        20        30  

         60        70        80        90       100       110      
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
        :....: ::.:: :::..:::  : ..::. ::: ::::::. :.::::..::::::: 
XP_024 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
             40        50        60        70        80        90  

        120       130       140       150       160       170      
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
       .:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...:::::::  .:
XP_024 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
            100       110       120       130       140       150  

        180       190       200       210       220     
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       :::.:::::::.: :.:: :   :.:::::.  ::::::.: : ..: .
XP_024 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
            160       170       180       190       200 

>>NP_001308350 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 757 init1: 736 opt: 763  Z-score: 889.3  bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)

               10        20        30         40           50      
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
                                     : .: : :.:  :. .    .:. : .:::
NP_001                             MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
                                           10        20        30  

         60        70        80        90       100       110      
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
        :....: ::.:: :::..:::  : ..::. ::: ::::::. :.::::..::::::: 
NP_001 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
             40        50        60        70        80        90  

        120       130       140       150       160       170      
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
       .:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...:::::::  .:
NP_001 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
            100       110       120       130       140       150  

        180       190       200       210       220     
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       :::.:::::::.: :.:: :   :.:::::.  ::::::.: : ..: .
NP_001 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
            160       170       180       190       200 

>>NP_001166 (OMIM: 602843) rho GDP-dissociation inhibito  (201 aa)
 initn: 757 init1: 736 opt: 763  Z-score: 889.3  bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)

               10        20        30         40           50      
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
                                     : .: : :.:  :. .    .:. : .:::
NP_001                             MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
                                           10        20        30  

         60        70        80        90       100       110      
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
        :....: ::.:: :::..:::  : ..::. ::: ::::::. :.::::..::::::: 
NP_001 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
             40        50        60        70        80        90  

        120       130       140       150       160       170      
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
       .:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...:::::::  .:
NP_001 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
            100       110       120       130       140       150  

        180       190       200       210       220     
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       :::.:::::::.: :.:: :   :.:::::.  ::::::.: : ..: .
NP_001 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
            160       170       180       190       200 

>>NP_001308352 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 757 init1: 736 opt: 763  Z-score: 889.3  bits: 171.6 E(92320): 9.3e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (31-225:3-201)

               10        20        30         40           50      
pF1KE0 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
                                     : .: : :.:  :. .    .:. : .:::
NP_001                             MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
                                           10        20        30  

         60        70        80        90       100       110      
pF1KE0 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
        :....: ::.:: :::..:::  : ..::. ::: ::::::. :.::::..::::::: 
NP_001 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
             40        50        60        70        80        90  

        120       130       140       150       160       170      
pF1KE0 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
       .:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...:::::::  .:
NP_001 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
            100       110       120       130       140       150  

        180       190       200       210       220     
pF1KE0 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
       :::.:::::::.: :.:: :   :.:::::.  ::::::.: : ..: .
NP_001 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
            160       170       180       190       200 

>>NP_001288170 (OMIM: 601925,615244) rho GDP-dissociatio  (235 aa)
 initn: 624 init1: 624 opt: 625  Z-score: 728.9  bits: 142.1 E(92320): 7.9e-34
Smith-Waterman score: 625; 59.6% identity (84.6% similar) in 156 aa overlap (36-191:15-170)

          10        20        30        40        50        60     
pF1KE0 ACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPD
                                     :...  ::   .:. :..::. ::..:: :
NP_001                 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKD
                               10        20        30        40    

          70        80        90       100       110       120     
pF1KE0 DRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVL
       :.:: :::..::: .  ..::..::: :: :::.  .::::. .::::::  .: : :::
NP_001 DESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVL
           50        60        70        80        90       100    

         130       140       150       160       170       180     
pF1KE0 KEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEE
       ::::.::.::::.:.::::::.: ..::::.:...::: :::::::: :.::::.:::::
NP_001 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEE
          110       120       130       140       150       160    

         190       200       210       220                         
pF1KE0 APRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD                    
       ::.:..                                                      
NP_001 APKGSISPSHPRPGFRRERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCS
          170       180       190       200       210       220    




225 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:45:55 2019 done: Thu Oct 24 21:45:56 2019
 Total Scan time:  3.580 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com