GENSCAN 1.0	Date run:  6-Nov-116	Time: 14:39:33

Sequence gi568815585r:29414483_29636188 : 221706 bp : 44.75% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  14361  14414   54  2  0   90   32    62 0.269   2.08
 1.02 Intr +  25501  25567   67  0  1   85  111    70 0.398   7.48
 1.03 Term +  35501  35631  131  0  2   32   47   121 0.153   0.74
 1.04 PlyA +  36208  36213    6                               1.05

 2.00 Prom +  48176  48215   40                              -3.86
 2.01 Sngl +  49545  49808  264  2  0   22   37   195 0.540   3.16
 2.02 PlyA +  52092  52097    6                               1.05

 3.04 PlyA -  52535  52530    6                               1.05
 3.03 Term -  53045  52929  117  2  0   75   38    54 0.315  -2.36
 3.02 Intr -  57483  57346  138  0  0   87  105    71 0.831   9.36
 3.01 Init -  58053  57985   69  0  0   65   59    89 0.930   4.75
 3.00 Prom -  59151  59112   40                              -3.26

 4.00 Prom +  60804  60843   40                              -3.86
 4.01 Init +  65598  65882  285  2  0   94   82   354 0.300  32.48
 4.02 Intr +  73418  73523  106  1  1   92   65   156 0.430  13.49
 4.03 Intr +  78164  78237   74  0  2   89   92    70 0.744   6.63
 4.04 Intr +  82720  82854  135  0  0   49    3   199 0.523   8.26
 4.05 Intr +  83936  84055  120  1  0   88  105   107 0.971  13.09
 4.06 Intr +  86615  86712   98  1  2   81   96    98 0.998   8.71
 4.07 Intr +  91156  91337  182  1  2  105   23   106 0.476   5.31
 4.08 Term +  93042  93223  182  1  2   76   49   141 0.133   6.77
 4.09 PlyA +  94697  94702    6                               1.05

 5.16 PlyA -  94951  94946    6                               1.05
 5.15 Term - 100101  99998  104  1  2  101   48   211 0.982  16.84
 5.14 Intr - 100682 100250  433  2  1   51   37   312 0.721  15.62
 5.13 Intr - 100997 100912   86  0  2   45   63    26 0.794  -4.66
 5.12 Intr - 101764 101656  109  1  1   81   77   170 0.966  15.06
 5.11 Intr - 102828 102662  167  1  2  111  105   159 0.999  19.58
 5.10 Intr - 103308 103091  218  2  2   69   82   149 0.635  10.55
 5.09 Intr - 105067 104965  103  2  1   82   92    98 0.933   8.83
 5.08 Intr - 107974 107835  140  0  2   77  105    57 0.987   6.41
 5.07 Intr - 109006 108784  223  2  1  125   94   403 0.999  41.79
 5.06 Intr - 109771 109650  122  0  2   81   91   186 0.968  18.34
 5.05 Intr - 116230 116056  175  2  1   83   89   134 0.996  12.00
 5.04 Intr - 118500 118342  159  1  0   99  103   161 0.999  18.66
 5.03 Intr - 121720 121337  384  2  0   52   86   569 0.012  47.92
 5.02 Intr - 125389 125274  116  0  2   44   93    67 0.013   2.89
 5.01 Init - 135798 135722   77  0  2  101   90    31 0.360   3.46
 5.00 Prom - 151148 151109   40                              -5.46

 6.00 Prom + 151953 151992   40                              -5.46
 6.01 Init + 155680 155774   95  0  2   29   22   164 0.065   1.75
 6.02 Intr + 162830 162916   87  2  0   87   81    40 0.223   2.29
 6.03 Intr + 175680 175752   73  0  1  104   59    59 0.084   4.01
 6.04 Intr + 177734 177934  201  1  0   39   99    45 0.081   0.18
 6.05 Intr + 190017 190109   93  2  0  106   85     9 0.697   2.56
 6.06 Term + 190341 190403   63  2  0  120   39    75 0.811   3.69
 6.07 PlyA + 194919 194924    6                               1.05

 7.02 PlyA - 195667 195662    6                               1.05
 7.01 Term - 221215 220998  218  2  2   49   48   167 0.962   6.11

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 121706 121337  370  2  1  101   86   555 0.987  53.76


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585r:29414483_29636188|GENSCAN_predicted_peptide_1|83_aa
MGHCCCKPYNCLQCLDKTNESALVKEKELSIELANIRDEVGSLQPLSYDRKVEDHDAPRP
RCSVTLGVTVITSIFQVAGWKKE

>gi568815585r:29414483_29636188|GENSCAN_predicted_CDS_1|252_bp
atgggccattgctgctgcaagccttataactgccttcagtgcctggacaagacgaatgaa
agtgcccttgtgaaagaaaaagagctgtcaatcgaacttgcaaacatcagggatgaagtt
ggctccttacagccactgtcctatgaccgcaaggtggaggaccatgatgccccccgacca
cggtgcagtgtgacacttggtgtgacagtcatcacatctatattccaggtggcaggctgg
aagaaggaatga

>gi568815585r:29414483_29636188|GENSCAN_predicted_peptide_2|87_aa
MLAGGDGVVEPFLQTLEVLAAGCGQDLKVVVLSKPFLQMWKVPARRLGTGVERTAVSRCL
RAERDHSVTLRDVEDEKLKAEAWKQIQ

>gi568815585r:29414483_29636188|GENSCAN_predicted_CDS_2|264_bp
atgttggctggtggagatggcgtggtagagccattcctgcagactctggaggtcctggct
gctggctgtggacaggatctgaaggttgtggtgttgagcaagccattcttgcagatgtgg
aaggtgcctgcaaggaggctgggaacaggtgtggagaggacggctgtgagcaggtgcctg
agagcagaaagggatcactctgtgactctaagagatgtggaggatgagaagctgaaggcg
gaagcctggaagcaaattcagtaa

>gi568815585r:29414483_29636188|GENSCAN_predicted_peptide_3|107_aa
MPPGGKCLCPNPLGHRNIRKVVRVPAASLGPGDQKGAGAVKITGGICECFLGAKHLPHTV
THSKPTRGPVNLGLQSFQISTAPVHIIHYMGAIQKARAVERPDNSSL

>gi568815585r:29414483_29636188|GENSCAN_predicted_CDS_3|324_bp
atgccccctggtggcaaatgtctttgtccaaacccgttaggtcacaggaacatccgcaag
gtggtcagggtccctgcagcatctctcgggcctggtgaccaaaagggagctggcgctgtg
aaaatcacaggtggcatctgcgagtgcttcctgggtgccaagcacctgcctcataccgtt
acccacagtaagcctactaggggtcccgttaatttgggcttgcagagttttcagatctcc
acggcaccggttcatataatacactacatgggggccatccagaaggcccgggcagtggaa
aggccagataatagctccctgtga

>gi568815585r:29414483_29636188|GENSCAN_predicted_peptide_4|393_aa
MEAESFPCLLRPFFKERSCALRPAFHTAKCEKLQKEKEELERRFEDEVKRLGWQQQAELQ
ELEERLQLQFEAEMARLQEEHGDQLLSIRCQHQEQVEDLTASHDAALLEMENNHTVAITI
LQDDHDHKVQELMSTHELEKKELEENFEKLRLSLQWPQLDSLYHYLQDQVDTLTFQSQSL
RDRARRFEEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKL
AEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRLERRFHVRMLQPLHLPQTDPPDTTCLF
VAFGRCVGGLPPDRRPCPPHAGTRFWLDVRMDGGTHTTDTKRAPATQLLTVHSGFSHDCT
AKFTRQALGFVPPPALWEQRFRTSWHSSSGALF

>gi568815585r:29414483_29636188|GENSCAN_predicted_CDS_4|1182_bp
atggaggctgagtccttcccatgcctcctacggccattttttaaagaaagatcttgtgct
ttgcgcccagccttccatacagcaaagtgcgagaaactacaaaaggagaaggaggagctg
gagaggcggttcgaggacgaggtgaagaggctgggctggcagcagcaggccgagctccag
gagctggaggagcggctgcagctgcaattcgaggcggaaatggcgcgcctgcaggaggag
cacggtgaccagctgctgagcatccggtgtcaacaccaggagcaggtggaagatctcacc
gccagccatgatgctgctctcctagagatggaaaataaccacacagttgccatcacaatc
ctgcaggatgaccacgaccacaaagtccaagaattgatgtccactcatgagcttgaaaag
aaagaattggaagaaaattttgaaaaactgcggctgtcattgcagtggccccagctggac
tccttgtatcattacttgcaggaccaggtggacacgctgaccttccagagccagtctctg
cgggacagagcccgccgcttcgaagaggccttgaggaagaacacagaggagcagctggag
attgcattggctccttatcagcacttggaagaagacatgaagagtctgaagcaggtatta
gaaatgaagaatcagcaaatacacgagcaagaaaagaagattcttgagctggaaaagctg
gcagaaaagaacattatcctagaagaaaagatccaggttctccaacagcagaacgaagac
ctcaaagcaaggattgaccaaaacacagttgtcaccaggctggagcgacgtttccacgtt
cggatgctgcagcctctgcacctgcctcagacagacccaccagataccacctgtctcttc
gtggcatttgggagatgcgtgggcggcctgccccccgaccgccgcccctgcccaccacat
gctgggacaaggttctggctggatgtcagaatggatgggggcactcacaccacagacacg
aagagagcacctgccacgcagctgctgactgtgcatagcggcttctcacatgactgcacc
gccaaattcacgcggcaggcactgggcttcgtccctcctcctgcactgtgggagcagcgg
ttcagaaccagctggcactcatcatcaggtgcattgttttaa

>gi568815585r:29414483_29636188|GENSCAN_predicted_peptide_5|871_aa
MDALSRHWPCWLVGGSGVPSPTLGARLSALGFSAAVGCIFVPVSSKGIQFALSLDSKQYL
RSNQALNSNMGCKVLLNIGQQMLRRKVVDCSREETRLSRCLNTFDLVALGVGSTLGAGVY
VLAGAVARENAGPAIVISFLIAALASVLAGLCYGEFGARVPKTGSAYLYSYVTVGELWAF
ITGWNLILSYIIGTSSVARAWSATFDELIGRPIGEFSRTHMTLNAPGVLAENPDIFAVII
ILILTGLLTLGVKESAMVNKIFTCINVLVLGFIMVSGFVKGSVKNWQLTEEDFGNTSGRL
CLNNDTKEGKPGVGGFMPFGFSGVLSGAATCFYAFVGFDCIATTGEEVKNPQKAIPVGIV
ASLLICFIAYFGVSAALTLMMPYFCLDNNSPLPDAFKHVGWEGAKYAVAVGSLCALSASL
LGSMFPMPRVIYAMAEDGLLFKFLANVNDRTKTPIIATLASGAVAAVMAFLFDLKDLVDL
MSIGTLLAYSLVAACVLVLRYQPEQPNLVYQMASTSDELDPADQNELASTNDSQLGFLPE
AEMFSLKTILSPKNMEPSKISGLIVNISTSLIAVLIITFCIVTVLGREALTKGALWAVFL
LAGSALLCAVVTGVIWRQPESKTKLSFKVPFLPVLPILSIFVNVYLMMQLDQGTWVRFAV
WMLIDGCCLISQGPRGVLFLQEILCGPLSAGSRPHKVAPAPGQVVRSIGPGPTLESRVQE
QAVDSYVKSIPGAQCLLQSDAQLCGEMGSGTVQAESLETSSTCGKPHLHSAHSRYSRGLR
GHQGAKLKDPMASGGPGPAALSAQETPQHKAVQRNVGLCQMSKQTVAFVWQLLQMWKGFI
IYFGYGLWHSEEASLDADQARTPDGNLDQCK

>gi568815585r:29414483_29636188|GENSCAN_predicted_CDS_5|2616_bp
atggatgccctgagccgtcactggccctgctggctggtgggtggctctggagtgcccagt
ccgactttaggagcgagattatcagccctgggcttctcagcagcagttggctgcatcttt
gttccagtgtcttccaaaggaattcagtttgccctctccctagatagcaagcaatactta
agaagtaaccaagctctgaacagcaacatggggtgcaaagtcctgctcaacattgggcag
cagatgctgcggcggaaggtggtggactgtagccgggaggagacgcggctgtctcgctgc
ctgaacacttttgatctggtggccctcggggtgggcagcacactgggtgctggtgtctac
gtcctggctggagctgtggcccgtgagaatgcaggccctgccattgtcatctccttcctg
atcgctgcgctggcctcagtgctggctggcctgtgctatggcgagtttggtgctcgggtc
cccaagacgggctcagcttacctctacagctatgtcaccgttggagagctctgggccttc
atcaccggctggaacttaatcctctcctacatcatcggtacttcaagcgtagcgagggcc
tggagcgccaccttcgacgagctgataggcagacccatcggggagttctcacggacacac
atgactctgaacgcccccggcgtgctggctgaaaaccccgacatattcgcagtgatcata
attctcatcttgacaggacttttaactcttggtgtgaaagagtcggccatggtcaacaaa
atattcacttgtattaacgtcctggtcctgggcttcataatggtgtcaggatttgtgaaa
ggatcggttaaaaactggcagctcacggaggaggattttgggaacacatcaggccgtctc
tgtttgaacaatgacacaaaagaagggaagcccggtgttggtggattcatgcccttcggg
ttctctggtgtcctgtcgggggcagcgacttgcttctatgccttcgtgggctttgactgc
atcgccaccacaggtgaagaggtgaagaacccacagaaggccatccccgtggggatcgtg
gcgtccctcttgatctgcttcatcgcctactttggggtgtcggctgccctcacgctcatg
atgccctacttctgcctggacaataacagccccctgcccgacgcctttaagcacgtgggc
tgggaaggtgccaagtacgcagtggccgtgggctccctctgcgctctttccgccagtctt
ctaggttccatgtttcccatgcctcgggttatctatgccatggctgaggatggactgcta
tttaaattcttagccaacgtcaatgataggaccaaaacaccaataatcgccacattagcc
tcgggtgccgttgctgctgtgatggccttcctctttgacctgaaggacttggtggacctc
atgtccattggcactctcctggcttactcgttggtggctgcctgtgtgttggtcttacgg
taccagccagagcagcctaacctggtataccagatggccagtacttccgacgagttagat
ccagcagaccaaaatgaattggcaagcaccaatgattcccagctgggctttttaccagag
gcagagatgttctctttgaaaaccatactctcacccaaaaacatggagccttccaaaatc
tctgggctaattgtgaacatttcaaccagcctcatagctgttctcatcatcaccttctgc
attgtgaccgtgcttggaagggaggctctcaccaaaggggcgctgtgggcagtctttctg
ctcgcagggtctgccctcctctgtgccgtggtcacgggcgtcatctggaggcagcccgag
agcaagaccaagctctcatttaaggttcccttcctgccagtgctccccatcctgagcatc
ttcgtgaacgtctatctcatgatgcagctggaccagggcacctgggtccggtttgctgtg
tggatgctgatagatggctgctgcctcatctcccagggccctcgaggggtgcttttcctc
caggaaatactttgcggcccactgtctgctggcagccggccacacaaggtggccccagcc
cctgggcaggtggtaagaagcataggtcctggacccaccctggagtcccgtgtgcaggaa
caggctgtggactcctatgtgaagtccattcctggggctcagtgtctcctgcagtctgac
gctcagttatgtggagaaatgggcagtgggactgtccaggctgagagcctggagacctcc
agcacctgcgggaaaccccatctccatagtgcacattctcgatactctcgtggcctccgg
gggcatcagggggctaagctgaaggacccgatggcctctggtggccctggcccagctgct
ctgtctgctcaggaaacaccgcagcataaggccgtccagaggaacgtagggctttgccag
atgtcgaagcagacagtggccttcgtgtggcagctgctccagatgtggaaaggcttcatc
atctactttggctatggcctgtggcacagcgaggaggcgtccctggatgccgaccaagca
aggactcctgacggcaacttggaccagtgcaagtga

>gi568815585r:29414483_29636188|GENSCAN_predicted_peptide_6|203_aa
MAALLCAVVPLLNLLCPELSMEEEATACHVPGSGLARARRQIQQAPTVGAKYTSQLQVPR
WWVSPTTPVLYGDILSYRPKHGMSELSSVFTKCNTCHSPLFLTITRGKKPNESHWVWQEG
QTTDQPESGPKPRNIFSEAQVPGMTKSRPVGQERAQAWHPTVDKIFRPLALGKKVTRVTS
SEKPTQCENEDDDLDDNPLSLND

>gi568815585r:29414483_29636188|GENSCAN_predicted_CDS_6|612_bp
atggctgctctgctatgtgcagtggtccctctgctgaacctcctctgccccgaactcagc
atggaggaggaggccacggcctgccacgtgcctgggtcagggttagccagagccaggcgc
cagattcagcaggctcccacagttggagccaaatacacgagtcagctccaagtacctcgc
tggtgggtgtcgcccaccacccctgtgctgtatggagacatcctatcctacagacccaag
cacgggatgagtgagttatccagtgtgttcaccaaatgcaatacctgccattccccactg
ttcctgacaataactagaggaaaaaagcccaatgaaagccactgggtgtggcaggagggg
caaaccacagaccagccagaatctggtccaaagcccagaaacatcttttctgaagcccaa
gttcctgggatgaccaaatctcgaccagtgggccaggaaagggctcaggcctggcatcca
actgttgacaagattttcaggccattggcactaggtaagaaggtaaccagggtaacaagc
tctgaaaagcctactcaatgtgaaaatgaggatgatgaccttgatgataatccactttca
cttaatgactag

>gi568815585r:29414483_29636188|GENSCAN_predicted_peptide_7|72_aa
XREQNWVKNEFAKLTEVGFKKWIITNSPELKEHILTQCKEAKNLEKSLEELLTRITSLEK
NVNDLMELKNTA

>gi568815585r:29414483_29636188|GENSCAN_predicted_CDS_7|219_bp
ncaagggaacaaaactgggtgaagaatgagtttgccaaactgacagaagtgggcttcaaa
aagtggataataacaaactcccccgagctaaaggagcacattttaacccaatgcaaggaa
gctaagaaccttgaaaaaagtttagaggaattgctaactagaataaccagtctagaaaag
aatgtaaatgacctgatggagctgaaaaacacagcataa