GENSCAN 1.0 Date run: 8-Nov-116 Time: 00:11:54 Sequence gi568815586r:10885964_11086860 : 200897 bp : 36.21% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Term + 243 442 200 1 2 75 43 142 0.730 4.98 1.02 PlyA + 1281 1286 6 1.05 2.07 PlyA - 2662 2657 6 1.05 2.06 Term - 5962 5864 99 1 0 115 28 51 0.432 -1.05 2.05 Intr - 14324 14251 74 0 2 7 113 100 0.390 2.61 2.04 Intr - 15391 15274 118 1 1 54 61 101 0.532 3.12 2.03 Intr - 23289 23147 143 1 2 50 83 64 0.048 1.25 2.02 Intr - 32024 31943 82 2 1 59 43 102 0.040 1.09 2.01 Init - 39003 38617 387 0 0 38 41 209 0.236 8.05 2.00 Prom - 41111 41072 40 -4.55 3.00 Prom + 43237 43276 40 -7.35 3.01 Init + 43311 43374 64 2 1 63 121 91 0.843 11.36 3.02 Intr + 44306 44341 36 0 0 89 99 15 0.501 0.02 3.03 Term + 44699 45099 401 0 2 84 33 464 0.990 34.79 3.04 PlyA + 46337 46342 6 1.05 4.06 PlyA - 47882 47877 6 1.05 4.05 Term - 60460 60336 125 2 2 34 49 96 0.004 -2.13 4.04 Intr - 74194 74088 107 0 2 81 81 88 0.042 6.34 4.03 Intr - 87758 87692 67 0 1 72 93 46 0.005 0.54 4.02 Intr - 88829 88785 45 0 0 91 94 39 0.679 2.26 4.01 Init - 97150 97009 142 1 1 67 64 71 0.567 2.95 4.00 Prom - 126379 126340 40 -2.85 5.00 Prom + 131037 131076 40 -3.35 5.01 Init + 131820 131846 27 2 0 107 94 6 0.665 2.33 5.02 Intr + 140730 140828 99 2 0 53 40 92 0.016 0.29 5.03 Intr + 162934 163146 213 0 0 97 36 127 0.223 6.39 5.04 Intr + 177658 177771 114 0 0 80 76 42 0.057 1.92 5.05 Term + 191920 192018 99 0 0 83 50 98 0.863 2.65 5.06 PlyA + 192608 192613 6 1.05 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Sngl + 66800 67219 420 1 0 65 54 150 0.901 5.38 S.002 Init + 72400 72486 87 0 0 58 78 76 0.877 4.29 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815586r:10885964_11086860|GENSCAN_predicted_peptide_1|66_aa XPGDEQSCLGDFRSTIMSKRKVREKEQRGVPGRYCLMMWGTEEAAGLVQDRFLLGSRVQE KNRKSS >gi568815586r:10885964_11086860|GENSCAN_predicted_CDS_1|201_bp ngacctggagatgagcagtcctgcctcggtgacttcaggtcaaccatcatgtcaaaaagg aaggtcagagaaaaggaacaaagaggagtgccaggcagatattgcctgatgatgtggggg actgaggaagctgcaggcctggtgcaagacaggtttctccttggcagcagagtacaggaa aagaacaggaaatcctcctaa >gi568815586r:10885964_11086860|GENSCAN_predicted_peptide_2|300_aa MNPGVGFFEKINKIDRPVARLIKKKREKNQIDPPKNDKGDITTDSTEIQTTIRENYKHLY ANKLENLEEMDTFLDTYTLPRLNQEEFESLSIPLTGSEIEAIINSLPTKKSPGPDGITAE FYQSYKEELAGKFQKQALISAQLLVRAFQLYLDMAEEFIIGNLSNGFIVLINCIDWVSKR ELSSVDKLLIILAISRIGLIWEILGYWRDWPKLLIQESGGSEYLEICLLVEQNPPPPTKI SAQVISRALEKQGTLPSEHWVAQIPSGKRYLLTFQCKASSSEGKMDRLLTVIKVFKTGVS >gi568815586r:10885964_11086860|GENSCAN_predicted_CDS_2|903_bp atgaatccaggagttggtttttttgaaaagatcaacaaaattgatagaccagtagcaaga ctaataaagaagaaaagagagaaaaatcaaatagaccccccaaaaaatgataaaggggat atcaccactgattccacagaaatacaaactaccatcagagaaaactataaacacctctat gcaaataaactagaaaatctagaagaaatggatacattcctcgacacatacaccctccca agactaaaccaggaagaatttgaatccctgagtataccactaacaggctctgaaattgag gcaataattaatagcctaccaaccaaaaaaagtccaggaccagacggaatcacagccgaa ttctaccagagttacaaggaggagctggctgggaagttccaaaagcaggcactgatatct gctcagcttctggtgagggctttccagctgtatcttgacatggcagaagaattcataatt gggaatttgagcaatggatttatagtactgatcaactgcattgactgggtcagtaaaaga gagctgtcctcagtcgataaactcctcattatcttggcaatctccagaattgggctgatc tgggaaatattaggatattggagagattggcctaaactcttaatccaggagagtgggggc tctgaatacctggaaatctgcctgcttgtggagcagaacccacccccaccaaccaagatt tctgcacaggttatctccagggctttggagaaacaaggtactcttccctctgagcactgg gttgctcagatccccagtggaaagagatatttgcttacattccagtgtaaagcttcttct tcagaaggcaagatggacaggttactcacagtgatcaaagtttttaagactggagtttcc taa >gi568815586r:10885964_11086860|GENSCAN_predicted_peptide_3|166_aa MLLILLSVALLAFSSAQDLDEDVSQEDVPLVISDGGDSEQFIDEERQGPPLGGQQSQPSA GDGNQNDGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRP PRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSPQ >gi568815586r:10885964_11086860|GENSCAN_predicted_CDS_3|501_bp atgcttctgattctgctgtcagtggccctgctggccttcagctcagctcaggacttagat gaagatgtcagccaagaagacgttcccttggtaatatcagatggaggagactctgagcag ttcatagatgaggagcgtcagggaccacctttgggaggacagcaatctcaaccctctgct ggtgatgggaaccagaatgatggccctcagcagggaccaccccaacaaggaggccagcag caacaaggtccaccacctcctcagggaaagccacaaggaccaccccaacagggaggccat ccccctcctcctcaaggaaggccacaaggaccaccccaacagggaggccatccccgtcct cctcgaggaaggccacaaggaccaccccaacagggaggccatcagcaaggtcctccccca cctcctcctggaaagccccagggaccacctccccaagggggccgcccacaaggacctcca caggggcagtctcctcagtaa >gi568815586r:10885964_11086860|GENSCAN_predicted_peptide_4|161_aa MHACSNFEFCYIIWHNGQATWARLYICYRARFCFGFDLRQAALANSFTWSRTIAAELVWL FGAAAEEYFACWNLLYLLKSGSFHSYLAKYEASSTIGLSAQSNEAVAVTTSLNLTFVKIT NKLENLEEIDKFLDTYTLPAAGSQRPQTEGPAEAMAEEHKL >gi568815586r:10885964_11086860|GENSCAN_predicted_CDS_4|486_bp atgcatgcctgtagcaactttgaattctgttacatcatctggcacaatggccaagcaact tgggccagactctatatctgctatagagcccgtttttgtttcgggtttgacttgagacaa gcagcccttgcaaactcctttacctggtcaagaaccattgctgctgaactagtgtggttg tttggagctgctgcagaagaatattttgcctgctggaacctgctgtatctactcaagagt ggaagttttcacagttatttagcaaagtatgaagcctcttcaactattggcctatcagcc caatccaatgaggctgttgctgtcaccacttcattaaatctgacatttgttaagatcacc aacaaactagaaaacctagaagagatagataaattcctggacacatacaccctccctgct gctggaagtcagagaccccaaacggagggaccagctgaagccatggcagaagaacataaa ttgtga >gi568815586r:10885964_11086860|GENSCAN_predicted_peptide_5|183_aa MPSRNILFKTGYRMNADYQKLKSTLTNAFQDVLSSLSRAELLVEKNKVGEIGSLEQMKYA EASNTQMLKCLVIAETLEPKILTSNLCEAKLNTVAYQCNNMTQSKPTLDTTRAKNITDKS TLLNQECGKYVQPCCVRNSGAKSKNRWEIAKVEKNKVGEIGNLEQIKYAEASSKPDAEMV DYC >gi568815586r:10885964_11086860|GENSCAN_predicted_CDS_5|552_bp atgccgagcagaaacatcctgtttaagacgggttatagaatgaatgcagactaccagaaa cttaaatcaacactcacaaatgctttccaggatgtgctgtcttcactaagcagagcagag cttctggtggagaaaaataaggttggagaaattggcagtcttgagcaaatgaaatatgct gaggctagtaacacccagatgctgaaatgcttggttattgctgagacattagaaccaaaa attcttacttctaatctatgtgaagccaaattaaacacagttgcataccaatgtaataat atgacccagagtaaaccaactctggacaccaccagagcaaaaaacataactgataaatca actctgctaaaccaagagtgtgggaaatatgtacaaccttgttgtgtcaggaattcagga gccaaaagcaaaaacagatgggaaattgcaaaggtggagaaaaataaggttggagaaatt ggcaatcttgagcaaataaaatatgctgaggctagcagcaagccagatgctgaaatggtt gattattgctga