GENSCAN 1.0	Date run:  8-Nov-116	Time: 00:15:20

Sequence gi568815586r:10725349_10926269 : 200921 bp : 36.81% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -   1240   1235    6                               1.05
 1.05 Term -   5811   5651  161  1  2  100   48    70 0.100   1.32
 1.04 Intr -   7724   7623  102  0  0  112   58    64 0.114   5.03
 1.03 Intr -  14922  14883   40  0  1   57   87    23 0.034  -4.02
 1.02 Intr -  15976  15833  144  1  0   73   69    82 0.077   4.36
 1.01 Init -  19979  19500  480  2  0   78   86   147 0.052   8.91
 1.00 Prom -  21627  21588   40                              -6.15

 2.12 PlyA -  23173  23168    6                               1.05
 2.11 Term -  24815  24639  177  2  0   41   32   167 0.008   3.10
 2.10 Intr -  30358  29833  526  0  1   43   39   280 0.000  10.62
 2.09 Intr -  38930  38789  142  0  1   85   77    53 0.100   2.39
 2.08 Intr -  39371  39083  289  2  1   21   31   215 0.020   5.00
 2.07 Intr -  49059  48946  114  0  0   79   89    89 0.013   7.82
 2.06 Intr -  66547  66017  531  1  0   51   39   218 0.010   5.40
 2.05 Intr -  67101  66939  163  2  1    2   38   198 0.001   5.26
 2.04 Intr -  72889  72775  115  2  1   33   31   101 0.002  -2.51
 2.03 Intr -  84111  83929  183  1  0  108  -11   164 0.020   7.34
 2.02 Intr -  90799  90646  154  1  1   74   24   115 0.586   2.42
 2.01 Init -  91644  91492  153  0  0   67   81    55 0.361   2.74
 2.00 Prom - 111028 110989   40                              -0.35

 3.04 PlyA - 111116 111111    6                               1.05
 3.03 Term - 122019 121715  305  1  2   51   33   238 0.401   8.95
 3.02 Intr - 123059 123024   36  0  0  111   99    23 0.748   3.02
 3.01 Init - 124089 124026   64  0  1   66   53   102 0.855   4.18
 3.00 Prom - 124161 124122   40                              -5.35

 4.00 Prom + 126804 126843   40                              -6.25
 4.01 Sngl + 128094 128591  498  2  0   90   55   318 0.879  24.49
 4.02 PlyA + 131914 131919    6                               1.05

 5.00 Prom + 133918 133957   40                              -3.45
 5.01 Init + 138625 138717   93  0  0   95   65    46 0.194   3.43
 5.02 Term + 152767 152922  156  0  0   67   38   126 0.344   2.45
 5.03 PlyA + 153448 153453    6                               1.05

 6.09 PlyA - 153724 153719    6                               1.05
 6.08 Term - 157350 156887  464  1  2   84   33   577 0.981  46.03
 6.07 Intr - 158927 158806  122  1  2   51  116    95 0.129   7.82
 6.06 Intr - 166577 166522   56  2  2  115   32    35 0.030  -2.54
 6.05 Intr - 174939 174866   74  1  2    7  113   100 0.389   2.61
 6.04 Intr - 176006 175889  118  2  1   54   61   101 0.532   3.12
 6.03 Intr - 183904 183762  143  2  2   50   83    64 0.049   1.25
 6.02 Intr - 192639 192558   82  0  1   59   43   102 0.040   1.09
 6.01 Init - 199618 199232  387  1  0   38   41   209 0.237   8.05

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  30324  29671  654  0  0   91   36   293 0.876  20.32
S.002 Term +  51970  52065   96  0  0  108   38   113 0.970   5.29
S.003 Sngl -  67073  66780  294  2  0   51   38   265 0.835  13.25
S.004 Term -  84111  83789  323  1  2  108   44   161 0.810   7.70
S.005 Init - 158869 158806   64  1  1   63  116    72 0.847   8.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:10725349_10926269|GENSCAN_predicted_peptide_1|308_aa
MPSLTTPIKIVLEVLARAIRQEKEIKSIQLGKEEVKLSLFTDGMIIYLENPTVSAQNLLK
LISNFGKVSGYKINVQKSQALLYTSNRQTESQITSKLPFTIATKRIKYLGIQLTRDVKDL
FKENYKPMLNKIKEDTNKWKNIPDSWIGRINIVKMHILPKLGPLQVLQRLVRNQKFTISN
VKRSFEKLGEAVEKRYSVNTVLKKESSQRSDNKQAKLTRVVVPSNDWTQLEARAKKPVEA
VQSGSFSGAQSREKNGNERDPLITKFTLNRRWSPCGAKGISNPNPAFSRQTSNSNSTVAY
FCRYVRLA

>gi568815586r:10725349_10926269|GENSCAN_predicted_CDS_1|927_bp
atgccctctctcaccactcctattaaaatagtgttggaagttctggccagggcaatcagg
caagagaaagaaataaagagtattcaattaggaaaagaggaagtcaaattgtccctgttt
acagatggcatgattatatacttagaaaaccccactgtctcagcccaaaatctccttaag
ctgataagcaacttcggcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagca
ttactatacaccagtaacagacaaacagagagccaaatcacgagtaaactcccattcaca
attgctacaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctc
ttcaaggagaactacaaaccaatgctcaacaaaataaaagaggacacaaacaaatggaag
aacattccagattcatggataggaagaatcaatattgtgaaaatgcacatactgcccaag
ttgggccctcttcaggtgctgcagagattggtgagaaaccagaagttcacaatcagtaat
gtcaaaagaagctttgagaagctgggagaggctgtggaaaaaaggtacagtgtgaacaca
gtcttgaaaaaagaaagctctcagaggagtgataacaaacaagccaagttaactagagtt
gtagtgccctccaatgattggacccagctggaagccagagcaaagaagcctgtagaagct
gttcaaagtggttcattctctggggcacagagcagggagaaaaatggaaatgagagggat
cctctgattaccaaatttactctcaacaggcgttggtccccatgtggagcaaaaggcatc
agtaaccccaatccagctttttctcgacagacttctaactcaaacagcactgtggcctat
ttctgcaggtatgtacggcttgcttaa

>gi568815586r:10725349_10926269|GENSCAN_predicted_peptide_2|848_aa
MEFHDATLSCFWVPVVLEPEPTELGVVALGQIWMQPKVQPGVIMTPREAPKETGCSQGAA
CPSCIPQVLRILHFQAEEAGLEHPSISSAFSSHQTLLTRAWDFRHTKQIRLHATGFRDPS
TEAHMRAIKAVIIFLLLLIVYYPVFLVMTSSALIPQGKLVLMIELRVTKAFESRTSSTLM
EAMVSISLDAVRTSDTVLYGLRGLEYSEDKKMWESLELPRDWLNGFDQNADSDMNNKVRV
EVVSDEDEELLGTEVKPRDLVPCIPAAPAMAKRGQGTAQVMASGGTSPKFWQLPCGVESA
GAQKSIIEVWEPPPRFQRMCGNAWMSRQRCAAGAGPSWRTSAKAVWKGNVGLETSHRVPT
WALPSGAVRRGSPSSTPQNGRSTNNLHHVPGKTADTQHQPVKAVKREVVPCKPTEAELPR
AVAAHLLHQHNLDNPDFVQGNNVPSGSQVGAFRNSLLADLTVTALELPNYSVRSHGPGSR
LAHIDSDSRSAQLQTGSHDTSVQASPWNPTLQIYLNKPRVQNCYSTSQYQADLMDPSSRT
TATDPGSRTDFVDPGPKTQAYYYIMDPGARPAQILIQTPNQSLQRFCYMAHTESLDELTG
EGFSLLKPVYKEWKRDLVPCIPATPAMTKRGHGTARAIASEGGSPKPWQLPCGIEPAGPQ
KSIIKVWEPPPRFQRMYGNSWMSRQKLAAGSGPSWRTSARAVWKGNVRLEPPHRVPTGTP
PSGAVRIGPPSSRPQNGRSTDSLLHVPGKVTDTQHQPMKAARNGTIPCKATGAELPKAMG
AHFLHQHDLDKLAKRVKAVHKAMTVMAMIPTGEPTVIQTFGNPHSNAKETLPFSSSFYRK
RTRKGEIK

>gi568815586r:10725349_10926269|GENSCAN_predicted_CDS_2|2547_bp
atggaattccatgatgccactctttcctgcttctgggtccctgtagtcttagagccagag
cccacagagctgggggtggtggcattggggcagatctggatgcagcccaaggtacagcca
ggagtgattatgactcctagagaagctcctaaggagactggatgttctcaaggagcagcc
tgtccatcttgcatcccccaggttctccggattctccatttccaagcagaagaagcagga
ctggagcacccttccatatcatcagccttctcctcgcaccagaccttactcaccagggcc
tgggactttagacacaccaagcagattcgactgcatgctacagggttcagagaccccagt
acagaggcccacatgagggccataaaggcagtgatcatctttctgctcctcctcatcgtg
tactacccagtctttcttgttatgacctctagcgctctgattcctcagggaaaattagtg
ttgatgattgagctcagggtcaccaaagcctttgagagcaggactagcagcaccttgatg
gaagccatggtatccatctcccttgatgctgtaagaacctcagacacagtcctttatggg
ttgagaggtttggagtactcagaagacaaaaagatgtgggagagtttggaacttcctaga
gactggttgaatggctttgaccaaaatgctgatagcgatatgaacaataaggtccgggtt
gaggtggtctcagatgaagatgaggaacttttgggaactgaagtaaagcctagggactta
gtgccctgcatcccagctgctccagccatggctaaaaggggccaaggtacagctcaggtc
atggcttcagggggtacaagccccaagttttggcagcttccatgtggtgttgagtctgca
ggtgcacagaagtcaataattgaggtttgggaacctccacctagatttcagagaatgtgt
ggaaatgcgtggatgtccaggcagaggtgtgctgcaggggctgggccctcatggagaact
tctgctaaggcagtgtggaagggaaatgtggggttggagacctcacacagagtccccact
tgggcactgcctagtggagctgtgagaagagggtcaccatcctctacaccccaaaatggt
agatccaccaacaacttgcaccatgtacctggaaaaactgcagacactcaacaccagcct
gtgaaagcagtcaagagggaggttgtaccttgcaaacccacagaggcggagctgcccagg
gctgtggcagcccaccttttgcatcagcataacctagataaccctgattttgttcagggg
aataatgtgcccagtggatctcaagtgggagcatttcggaactctttgctggctgatctg
actgtcacagcactggagctccctaactattcagttagatcccatggcccaggatccagg
ctggcccacatagactcagactccaggtctgcccagctccagactggttcccatgacacc
agtgtccaggccagcccctggaaccccacactacagatttacttgaacaaacccagggtc
cagaactgctacagtacatcccaataccaggctgacctcatggacccaagctccaggacc
actgctacagatccaggatccaggacagactttgtggatccaggaccaaagacccaagcc
tactattatatcatggacccaggtgccagacctgctcaaatattaatccagacaccaaac
cagtctctccagagattctgttacatggcccacacagaatctctagatgaactgactggt
gaagggttttccctgctgaagccagtctataaagaatggaaaagggacttggtgccctgc
atcccagctactccagccatgactaaaaggggccatggtacagctcgggctattgcttca
gagggtggaagtcccaagccttggcagcttccatgtggtattgagcctgcaggtccacag
aaatctataattaaggtttgggaacctccacctagatttcagaggatgtatggaaactcc
tggatgtccaggcagaagttagctgcagggtctgggccctcatggagaacttctgctagg
gcagtgtggaagggaaatgtgagattggagcccccacacagagtccctactgggacacca
cctagtggagctgtgagaatagggccaccatcctccagaccccagaatggtagatctacc
gacagcttgctccatgtgcctggaaaagtcacagacactcaacaccagcccatgaaagca
gccaggaatgggactataccctgcaaagccacaggggcggagctgcccaaggccatggga
gcccactttttgcatcagcatgacctggataagctggcgaaacgcgtgaaggccgtacac
aaggcaatgacggtgatggcaatgattcccacgggagaaccaactgtgatccagaccttt
ggcaatcctcacagtaatgcaaaggagactttaccattctcttcctcattttacagaaaa
agaactagaaagggagaaatcaagtaa

>gi568815586r:10725349_10926269|GENSCAN_predicted_peptide_3|134_aa
MLLVLLSVVLLALSSAQSTDNDVNYEDFTFTIPDVEDSSQRPDQGPQRPPPEGLLPRPPG
DSGNQDDGPQQRPPKPGGHHRHPPPPPFQNQQRPPRRGHRQLSLPRFPSVSLQEASSFFQ
RDRPARHPQEQPLW

>gi568815586r:10725349_10926269|GENSCAN_predicted_CDS_3|405_bp
atgctgctggtcctgctctcagtggtccttctggctctgagctcagctcagagcacagat
aatgatgtgaactatgaagactttactttcaccataccagatgtagaggactcaagtcag
agaccagatcagggaccccagagacctcctcctgaaggactcctacctagaccccctggt
gatagtggtaaccaagatgatggtcctcagcagagaccaccaaaaccaggaggccatcac
cgccatcctcccccacctccttttcaaaatcagcaacgaccaccccgacgaggacaccgt
caactctctctaccccgatttccttctgtcagcctgcaggaagcatcatcattcttccag
agggacagaccagcaagacatccccaggagcaaccactctggtaa

>gi568815586r:10725349_10926269|GENSCAN_predicted_peptide_4|165_aa
MDGPATPVSTDSNPPTQQEDSSACKCTHLEKRLFPLLLVAQLLLSPPGAAAVKCQLDPAK
WQDPQHSSICSVLHLRHWKGCEPDIGSQSTCFPEPESCLPVAADTDSNVTPATQQQRCCT
LACNLGTGPLHLLLSLLMQLGARACATGSDLTSTSSRATVNLHVP

>gi568815586r:10725349_10926269|GENSCAN_predicted_CDS_4|498_bp
atggatggccctgctacacctgtgagcactgacagcaacccgcccacccagcaggaagac
agcagtgcatgtaagtgcacacaccttgagaaaaggctcttcccactgctgctggtggca
cagttgctgctgtcaccaccgggggctgcagcagtgaaatgccagttggacccagcaaag
tggcaggatcctcagcattctagcatatgcagtgttctgcacctcaggcactggaaaggc
tgtgaaccagacatagggagccaaagcacatgctttccagaaccagagagctgcctccct
gtggctgctgacacagacagcaatgtcacccccgcaacacagcagcagagatgctgcaca
cttgcatgcaacctggggacaggccctctccatctgctgctgagtctgctgatgcagctg
ggggccagagcatgtgccactggcagtgacctgacttccaccagcagcagagccactgtg
aacttgcacgtaccctga

>gi568815586r:10725349_10926269|GENSCAN_predicted_peptide_5|82_aa
MDGTGGHYVKGNKPGTEKQTVHVLTYVDHTETKKPEYIEKHINETIHFPELKVNSPYRKG
PMIIQKPKFNIFRAQCKKTISG

>gi568815586r:10725349_10926269|GENSCAN_predicted_CDS_5|249_bp
atggatggaactggagggcattatgttaagggaaataagccaggcacagaaaaacaaaca
gtgcatgttctcacttatgttgatcacacagagaccaagaaaccagaatatattgagaaa
cacatcaatgaaacaatacatttcccagaactaaaggttaattctccatatcgaaagggc
ccaatgattatccaaaagcccaaatttaacattttcagggctcagtgcaagaagacaatt
agtggctaa

>gi568815586r:10725349_10926269|GENSCAN_predicted_peptide_6|481_aa
MNPGVGFFEKINKIDRPVARLIKKKREKNQIDPPKNDKGDITTDSTEIQTTIRENYKHLY
ANKLENLEEMDTFLDTYTLPRLNQEEFESLSIPLTGSEIEAIINSLPTKKSPGPDGITAE
FYQSYKEELAGKFQKQALISAQLLVRAFQLYLDMAEEFIIGNLSNGFIVLINCIDWVSKR
ELSSVDKLLIILAISRIGLIWEILGYWRDWPKLLIQESGGSEYLEICLLVEQNPPPPTKI
SAQVISRALEKQGTLPSEHWVAQIPSGKRYLLTFQCKASSSEGKMDRELTRFSQHKVGSD
TRASCKMLLILLSVALLAFSSAQDLNEDGGDSEQFLDEERQGPPLGGQQSQPSAGDGNQD
DGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQ
GRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSP
Q

>gi568815586r:10725349_10926269|GENSCAN_predicted_CDS_6|1446_bp
atgaatccaggagttggtttttttgaaaagatcaacaaaattgatagaccagtagcaaga
ctaataaagaagaaaagagagaaaaatcaaatagaccccccaaaaaatgataaaggggat
atcaccactgattccacagaaatacaaactaccatcagagaaaactataaacacctctat
gcaaataaactagaaaatctagaagaaatggatacattcctcgacacatacaccctccca
agactaaaccaggaagaatttgaatccctgagtataccactaacaggctctgaaattgag
gcaataattaatagcctaccaaccaaaaaaagtccaggaccagacggaatcacagccgaa
ttctaccagagttacaaggaggagctggctgggaagttccaaaagcaggcactgatatct
gctcagcttctggtgagggctttccagctgtatcttgacatggcagaagaattcataatt
gggaatttgagcaatggatttatagtactgatcaactgcattgactgggtcagtaaaaga
gagctgtcctcagtcgataaactcctcattatcttggcaatctccagaattgggctgatc
tgggaaatattaggatattggagagattggcctaaactcttaatccaggagagtgggggc
tctgaatacctggaaatctgcctgcttgtggagcagaacccacccccaccaaccaagatt
tctgcacaggttatctccagggctttggagaaacaaggtactcttccctctgagcactgg
gttgctcagatccccagtggaaagagatatttgcttacattccagtgtaaagcttcttct
tcagaaggcaagatggacagggagctgacacgtttctcccagcacaaagttgggagtgac
accagagcctcctgcaagatgcttctgattctgctgtcagtggccctgctggccttcagc
tcagctcaggatttaaatgaagatggaggagactctgagcagttcctagatgaggagcgt
cagggaccacctttgggaggacagcaatctcaaccctctgctggtgatgggaaccaggat
gatggccctcagcagggaccaccccaacaaggaggccagcagcaacaaggtccaccacct
cctcagggaaagccacaaggaccaccccaacaaggaggccagcagcaacaaggtccacca
cctcctcagggaaagccacaaggaccaccccaacagggaggccatccccctcctcctcaa
ggaaggccacaaggaccaccccaacagggaggccatccccgtcctcctcgaggaaggcca
caaggaccaccccaacagggaggccatcagcaaggtcctcccccacctcctcctggaaag
ccccagggaccacctccccaagggggccgcccacaaggacctccacaggggcagtctcct
cagtaa