GENSCAN 1.0	Date run:  5-Nov-116	Time: 19:23:44

Sequence gi568815587f:43782653_44020007 : 237355 bp : 43.23% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  15668  15775  108  0  0  120   58   109 0.993  11.36
 1.02 Intr +  32785  32849   65  2  2   93  101    89 0.737   9.14
 1.03 Intr +  33987  34020   34  2  1   97   80    44 0.827   2.30
 1.04 Intr +  36751  36806   56  2  2   59  113    19 0.390   0.20
 1.05 Intr +  48324  48358   35  2  2  121  113    -3 0.216   2.52
 1.06 Intr +  55665  55746   82  0  1  101   93    -5 0.852   0.94
 1.07 Intr +  57347  57412   66  1  0   94  109    69 0.925   8.70
 1.08 Intr +  72063  72216  154  2  1   54   44   158 0.900   7.65
 1.09 Term +  72492  72682  191  1  2  111   43   122 0.993   7.61
 1.10 PlyA +  73519  73524    6                               1.05

 2.06 PlyA -  75398  75393    6                               1.05
 2.05 Term -  83329  83240   90  1  0   67   42    61 0.055  -2.88
 2.04 Intr -  93118  93031   88  0  1   80   70   102 0.154   7.57
 2.03 Intr -  98201  98093  109  0  1   47   78    50 0.074  -0.76
 2.02 Intr - 107820 107690  131  2  2   96   92    80 0.865   9.54
 2.01 Init - 109421 109417    5  2  2   61   87     0 0.349  -3.33
 2.00 Prom - 112728 112689   40                              -4.56

 3.00 Prom + 113648 113687   40                              -2.76
 3.01 Init + 114804 115203  400  2  1   86   15   257 0.840  15.03
 3.02 Intr + 115349 116185  837  0  0   78   -4   621 0.682  43.26
 3.03 Intr + 116227 116528  302  2  2   -1   75   218 0.512   8.05
 3.04 Intr + 116546 116782  237  1  0   -7   -7   280 0.446   6.81
 3.05 Intr + 118864 119073  210  0  0   56   81   204 0.740  15.61
 3.06 Intr + 136386 136484   99  2  0   67   94    49 0.032   3.71
 3.07 Intr + 142642 142820  179  0  2   12   59   123 0.007   0.52
 3.08 Intr + 143781 143895  115  0  1  126   77    15 0.930   4.65
 3.09 Intr + 150441 150494   54  2  0   73  115    15 0.726   1.88
 3.10 Intr + 153427 153607  181  0  1   79   68    96 0.950   6.14
 3.11 Intr + 159732 160617  886  1  1   31   67   945 0.262  77.08
 3.12 Intr + 167993 168121  129  2  0   71   76   136 0.332  10.51
 3.13 Term + 175631 175739  109  2  1   59   44   116 0.832   2.28
 3.14 PlyA + 178637 178642    6                               1.05

 4.08 PlyA - 179231 179226    6                               1.05
 4.07 Term - 183406 183324   83  2  2   28   36   114 0.022  -1.94
 4.06 Intr - 198258 198177   82  0  1   91   78    47 0.253   3.21
 4.05 Intr - 201769 201741   29  2  2   95   98     4 0.221  -0.07
 4.04 Intr - 205776 205629  148  0  1  111   86    13 0.289   3.21
 4.03 Intr - 207210 207145   66  0  0  107   66    42 0.205   3.00
 4.02 Intr - 220287 220107  181  2  1   92  107    12 0.504   3.37
 4.01 Init - 221325 221270   56  0  2   51   72    87 0.522   2.42
 4.00 Prom - 229614 229575   40                              -2.36


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 142690 142820  131  0  2   88   59   122 0.936   8.94


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587f:43782653_44020007|GENSCAN_predicted_peptide_1|263_aa
XEKFKVETRTIAVDFASEDIYDKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVI
GEQVVFGYMNFILHAGSEHRSAYSVVITMTQLVLPGMVERSKGAILNISSGSGMLPVPLL
TIYSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYFVATKLAKIRKPTLDKPSPETFVKSA
IKTVGLQSRTNGYLIHALMVGLDNLKPAFLDLFENSHEYEQVYTGSLSEENQEELSIDNC
IVTWPDAPAYARSLQSTLLVLKI

>gi568815587f:43782653_44020007|GENSCAN_predicted_CDS_1|792_bp
naagaaaaattcaaagtggagacaagaaccattgctgttgactttgcatcagaagatatt
tatgataaaattaaaacaggcttggctggtcttgaaatcggcatcttagtgaacaacgtg
ggaatgtcgtatgagtatcctgaatactttttggatgttcctgacttggacaatgttatt
ggggaacaggtggtgtttggttacatgaactttatccttcatgcaggatctgagcacaga
tcagcatattcagtggtcattacgatgacacaattggtactgcctggcatggtggaaaga
tccaaaggggctattctgaacatttcatctggcagtggcatgctccctgtcccactcttg
accatctattctgcaaccaagacttttgtagatttcttctctcagtgcctccatgaggag
tataggagcaagggcgtctttgtgcagagtgtcctgccatacttcgtagctacaaaactg
gctaaaatccggaagccaactttggataagccctctccggagacgtttgtgaagtctgca
attaaaacagtcggcctgcaatcccgaaccaatggatacctgatccatgctcttatggta
gggctcgataatctcaaacctgccttcttggatttatttgaaaatagtcatgaatatgaa
caagtctacacgggctcactatctgaagaaaaccaagaagaactaagcattgataactgc
attgtaacttggccagatgctccagcatatgcacgttcactgcaaagcaccctactggtt
ttgaaaatctga

>gi568815587f:43782653_44020007|GENSCAN_predicted_peptide_2|140_aa
MLKFKFTQCARKKFDARVQTPPSDRLWYNRHCWLVDARRDSGSNSVCDRNLKSEAPTPAT
PNHRPRHQALPLDVTQRRHYFRSTSHPDILQNITLDNNNDDIVLIGYGEQKQGKDKLSME
ENMTNFSLYGSLKIECLLYT

>gi568815587f:43782653_44020007|GENSCAN_predicted_CDS_2|423_bp
atgctaaaatttaaattcactcaatgtgccagaaaaaaattcgatgctagagtacagacg
cccccaagtgaccgcctgtggtataacaggcactgttggcttgtggatgcccgcagagat
tcaggttccaactcagtctgtgatcggaaccttaagagtgaagcaccgactccagcaact
cccaatcacaggccgcggcatcaggcacttcctctcgacgttacgcagcgccgccactac
ttccggtccacctctcatcctgacatcctacaaaacatcactctagacaacaataatgac
gacattgtgctgattggatatggtgaacagaagcagggaaaggacaaactctctatggag
gaaaatatgaccaacttcagtctttatggttctttaaaaatagaatgtctgctgtacact
taa

>gi568815587f:43782653_44020007|GENSCAN_predicted_peptide_3|1245_aa
MVQKYQSPVRVYKYPFKLIMAAYERRFPTCPLIPTFMGSDTVNEFKSEDGAVHVIERRCK
LDVDAPRLLKKIAGVDYVYFVQKNSLNSRERTLHIEGHNETFSNCYTVHPENEDWTRFEQ
SASLDIKSFFGFEKTSSSSCKKQAASMAVVIPDAVLKEGLSGDALSSPSAPEPVVGIPDN
KLDADYIKRYLGDLTPLQESCLIRLHGWLQETHKGEIPKDEHILQFLCAWDFNIDKAREI
ICQSLAWRKQHQVDYILATWAVPQVLQNYYTGGWHHHDKDGWPLCMLRLGQMDTNGLVRA
LGEEALLRYVLSINEEELRRCEENTKVFVWPISSWTCLADLEGVNMRHLWRPDVKVLRWI
IEVVKASYPKRLGRLLILRSPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQDFLSGECM
CKVPEGGLVPKSLYWTMEELENEDLKLWTETIYHSASIFKGAPHKILIQIVDASSVTTWN
FDMYKGDIVFNIYHSKRSPQPPKKDSLGAPPLQLIDKVWQWGRDYSMVELPLICKGEGVQ
GSHVTTWPGLCILQWKFHSMPVCTISSLPQVDDVLASLQISSHNCKVMYYAKWHPVLRTL
KNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKP
PPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQASVLSATLRGLVTRGNMGNKQPQKV
TVPTGTALQGVVLIVSTLHQPGGWICGKDPCCSLRPLSNSVQNALACKSKQDYQAGILFK
TRAFISRDCGSDAAEDSASKGETYTLTLEHKAFGGKKNVERGVDIRQGPRGPRLGISSNN
TPTWFTSAVWNSTLGDMIRVQRCSGWLPLLNSRASRVLRGRGFSRNPRGRGLPSGAGWRG
AGGAGEGAVTFPERRGDVRRKGAGRARFKWHSLSSELRAVWAAAGYISREPGRRGADGDS
SGGERLGARRNSAPRAPCPPTGPPARPPSRGAPARAREGRRHPAADLDPPPGEPPAAASR
GAPAQRPPSESPGAPPPGPADAGGAMAAKPGELMGICSSYQAVMPHFVCLADEFPQPVRP
AKLPKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQ
SLSLQREQLSSCKLRNSLDSSDSDSALGHRDVPTTQRDDQAHKPNGLGDARETRWKDPRS
LNDLVEPNSLFFISHNQMAPPGPANWFYGPHPGTDSAEENSFDSL

>gi568815587f:43782653_44020007|GENSCAN_predicted_CDS_3|3738_bp
atggtgcaaaaataccagtcaccagtgagggtatacaaataccccttcaaattaattatg
gctgcctatgaaaggaggttccctacgtgtcctttgattccgacattcatgggcagtgac
actgtgaatgaattcaagagtgaagatggggctgttcatgtcattgaaaggcgctgcaag
ctggatgtagatgcaccaagactgctgaagaagattgcaggagttgattacgtttatttt
gtccagaagaactcactgaattctcgggaacgtactttgcacattgagggtcataatgaa
acattttccaattgctataccgttcaccctgaaaatgaagattggacccgttttgaacag
tctgcaagtttagatattaaatctttctttggttttgaaaagacatcttcgtcatcctgc
aagaaacaagcagcgtccatggctgttgtcatcccagatgctgtcctcaaggaggggctg
agtggcgatgccctcagcagccccagtgcacctgagcccgtggtgggcatccctgataac
aaactagatgctgactacatcaagagatacctgggcgatttgactccgctgcaggagagc
tgtctcattagacttcacgggtggctccaggagacccacaagggtgaaattccaaaagat
gagcatattcttcagttcctatgtgcatgggattttaatattgacaaagccagagagatc
atttgtcaatctttggcgtggaggaagcagcaccaggtagactacattcttgctacctgg
gccgttccacaggtccttcagaattactacacgggaggctggcatcatcacgacaaagat
gggtggcccctctgtatgctcaggctggggcagatggacaccaacggcttggtgagagca
ctcggggaggaagccctgctgagatacgttctctccataaatgaagaagagctaaggcga
tgtgaagagaatacaaaagtctttgtttggcctatcagctcatggacctgcctggcggac
ttggaaggggtgaacatgcgccacttatggagacctgatgtcaaagtgctgcggtggatc
atcgaggtggtgaaggccagttaccctaagagactgggccgacttctcatcctgcggtca
cccagggtatttcctgtgctctggacgctggttagtccatttattgatgacaacaccaga
aggaaattcctcatttatgcaggaaatgactaccaggatttcctgagtggagagtgcatg
tgcaaagtgccagagggtggactggtccccaaatctctctactggaccatggaggagctg
gagaatgaagacctcaagctctggactgagaccatctaccactctgcaagcatcttcaaa
ggagccccacacaagattctcattcagattgtggatgcctcttcagtcaccacttggaat
tttgacatgtacaaaggggacattgtctttaacatctatcactccaagaggtcgccacag
ccacccaaaaaggactccctaggggccccacctctccagctcatagacaaagtctggcag
tggggccgtgactacagcatggtggaattgcctctgatctgcaaaggagaaggcgtgcag
ggctcgcatgtgaccacgtggccgggcctctgcatcctgcagtggaaattccacagcatg
cccgtgtgcaccatcagcagcctgccccaggtggatgatgtgctcgcgtccctgcagatc
tcttcgcacaactgtaaagtgatgtactacgccaaatggcaccctgtgctgcgcacacta
aagaaccgcattgaagagaacactggccacaccttcaactccttactctgcaatctttat
cgcaatgagaaggacagcgtggactggcacagtgatgatgaaccctcactagggaggtgc
cccattattgcttcactaagttttggtgccacacgcacatttgagatgagaaagaagcca
ccaccagaagagaatggagactacacatatgtggaaagagtgaagatacccttggatcat
gggaccttgttaatcatggaaggagcgacacaagctgactggcaggccagtgttctttct
gccactctgagaggcctggtgacaagagggaacatgggaaacaagcagccccagaaggtc
acggtgcctactgggacagccctccaaggagtggtattgatcgtctccacgctgcaccag
ccaggtggctggatatgtggcaaggatccctgctgcagcttgaggccactttcaaactct
gtacagaacgccttggcctgcaagagtaaacaagattaccaggctggaattctgttcaag
accagggcttttatatccagagattgtgggtcagatgcggcagaagactctgcttccaag
ggagagacttatactttaaccttggagcataaggcctttggaggaaagaaaaatgttgaa
agaggtgttgatatccgccaaggtccccgagggccacgtttgggcatcagcagtaacaac
accccaacctggttcacttctgctgtgtggaactccacccttggagatatgattagagtg
cagcgttgctcgggctggcttcctcttttaaattctcgggccagccgcgtgctccggggc
cgcggcttctcccggaacccccgcgggcggggcctgccttccggagccggttggcggggg
gcgggcggcgccggggaaggggccgttactttcccagagcggcggggcgacgtcaggcgg
aagggcgcggggcgcgcacgctttaaatggcattcgctgtcatccgagctcagagccgtg
tgggcagccgcgggctatataagccgcgagcctggccgccgcggggcagacggcgacagc
agcggcggcgagcgcctcggagcgcggcggaacagcgccccccgagccccgtgccccccg
acgggtccgcccgcccgcccgccctcccgaggagcgccggcccgggcccgcgagggccgc
cgccaccccgcagcagatttggatcccccgcccggcgagcccccggctgctgcctcccgg
ggggccccggcgcagcggccgccctcggagagccccggcgccccgccgcccggccccgca
gacgccggaggcgccatggccgccaagcccggcgagctgatgggcatctgctccagttac
caggcggtgatgccgcacttcgtgtgcctggccgacgagttcccgcagcccgtgcggccc
gccaagctgcccaagggccggggccggctgcggcggccgcgccagtctcgcttcaagacg
cagccggtgaccttcgacgagatccaggaggtggaggaggagggggtgtcccccatggag
gaggagaaggccaagaagtcgttcctgcagagcctggagtgcctgcgccgcagcacgcag
agcctgtcgctgcagcgggagcagctcagcagctgcaaactgaggaacagcctggactcc
agcgactccgactcggccctggggcacagggatgtgcctacaacccagcgggatgatcaa
gcccacaagcccaatggcctaggggatgccagagaaacaagatggaaggatcccagatcc
ctgaatgaccttgtggagccgaacagcctgtttttcatttctcacaaccagatggcccca
cctggacctgccaactggttctatggcccccacccaggaactgactcagcagaagagaac
agcttcgactccctatga

>gi568815587f:43782653_44020007|GENSCAN_predicted_peptide_4|214_aa
MLTSKAWGNSSLLLAAARGKSPSPCRIQTPPALDKAMQPFPSTEQLPYPVPCQGLLLIVS
FNLHNKKSLLARVTIPILPDPEEALEEAVWRVWKTPPPTPAKTLFWRIFPGSSLLAPSNK
TPIDQNLSSDEELFVTHQANEPPCFGGNTKGQQITHSQQQVTYASEPHFLCLLNDDDDDN
SAYPIVGETIDKSKVVKTYPYVFLQEFYGFSSYI

>gi568815587f:43782653_44020007|GENSCAN_predicted_CDS_4|645_bp
atgctcacctccaaggcctgggggaacagctccctgctactggctgctgccagaggaaag
tcaccctcaccatgccgcatccagacccctccagccctggacaaggccatgcagccattc
ccgtcaacagagcagctcccctacccggtgccttgccaggggcttttgcttattgtctca
tttaacctccacaacaaaaaatcactcctagctagggtaactatccccattttaccggac
cctgaggaggctctggaggaagctgtgtggagagtgtggaagactccacccccaacccct
gcaaagacactgttttggagaatattcccagggagctccttacttgcgccaagtaataaa
acgcctattgatcaaaacctgagttctgatgaagagttatttgttactcaccaggcaaac
gaacccccgtgttttggaggtaacacgaagggccagcaaataacacattctcagcagcag
gtgacgtacgcttctgagcctcactttctttgcctgttaaatgatgatgatgatgataat
agcgcttaccccatagttggagaaaccattgacaaatccaaggtcgtgaagacttaccct
tatgtcttcttgcaggagttttacggctttagctcttatatttag