GENSCAN 1.0	Date run:  6-Nov-116	Time: 15:19:52

Sequence gi568815588f:123566408_123788157 : 221750 bp : 46.47% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3673   3869  197  0  2   24   36   151 0.278   1.71
 1.02 Term +   4270   4417  148  1  1   68   48   116 0.295   2.97
 1.03 PlyA +   8728   8733    6                               1.05

 2.00 Prom +  12571  12610   40                              -6.06
 2.01 Init +  13571  13609   39  1  0   81   98    11 0.093   1.59
 2.02 Intr +  16527  16668  142  2  1   79   -1   131 0.172   3.23
 2.03 Intr +  17789  17883   95  0  2   70   60    46 0.151  -0.32
 2.04 Intr +  18125  18272  148  1  1   29   82   170 0.526  10.31
 2.05 Term +  38111  38307  197  0  2   59   37   150 0.524   4.57
 2.06 PlyA +  38611  38616    6                               1.05

 3.00 Prom +  42318  42357   40                              -1.96
 3.01 Init +  44945  45103  159  1  0   79   97   187 0.769  18.52
 3.02 Term +  48394  48513  120  0  0   70   44    71 0.249  -0.63
 3.03 PlyA +  50307  50312    6                               1.05

 4.05 PlyA -  50402  50397    6                               1.05
 4.04 Term -  52848  52813   36  0  0  105   48    36 0.103  -1.36
 4.03 Intr -  57282  57080  203  1  2  104   67   195 0.934  18.00
 4.02 Intr -  58058  58011   48  0  0  108   83     5 0.453   0.65
 4.01 Init -  60647  60617   31  2  1   56   48    35 0.349  -3.78
 4.00 Prom -  64878  64839   40                              -1.96

 5.00 Prom +  65940  65979   40                              -4.56
 5.01 Init +  66833  66907   75  1  0   65   28    24 0.157  -4.78
 5.02 Intr +  67718  67817  100  1  1   93   72    63 0.660   4.88
 5.03 Intr +  69404  69576  173  0  2   60  109    89 0.860   7.86
 5.04 Intr +  75955  76015   61  0  1   91   98    22 0.063   1.81
 5.05 Intr +  79286  79413  128  0  2   29   89   114 0.277   6.00
 5.06 Intr +  93238  93619  382  0  1   59   74   164 0.132   6.58
 5.07 Term +  94698  94804  107  1  2   64   42    35 0.119  -4.93
 5.08 PlyA +  96336  96341    6                               1.05

 6.00 Prom +  98036  98075   40                              -7.26
 6.01 Init + 100001 100668  668  1  2   95   99  1584 0.984 152.90
 6.02 Intr + 108411 108524  114  0  0   82   99   171 0.957  17.16
 6.03 Term + 121522 121753  232  1  1  114   49   329 0.979  27.55
 6.04 PlyA + 123027 123032    6                               1.05

 7.00 Prom + 124634 124673   40                              -6.46
 7.01 Init + 127876 127942   67  0  1   66   94    23 0.081   2.01
 7.02 Intr + 136815 136989  175  1  1  131   82    63 0.143   9.00
 7.03 Intr + 152476 152593  118  1  1   69   80    26 0.285   0.37
 7.04 Intr + 155356 155469  114  0  0  103   77    -2 0.609   0.84
 7.05 Intr + 155878 155969   92  0  2   94   39    91 0.129   3.59
 7.06 Term + 173291 173441  151  2  1  130   50    99 0.410   7.68
 7.07 PlyA + 175824 175829    6                               1.05

 8.13 PlyA - 179252 179247    6                               1.05
 8.12 Term - 180610 180357  254  2  2   93   46   229 0.936  15.00
 8.11 Intr - 186694 186552  143  0  2  128   76   -29 0.579  -0.10
 8.10 Intr - 187121 187037   85  0  1   64   80    49 0.430   0.58
 8.09 Intr - 188355 188256  100  0  1   70   93    92 0.533   7.58
 8.08 Intr - 190945 190806  140  2  2   65   76   186 0.726  15.28
 8.07 Intr - 195762 195465  298  0  1   68   74   417 0.939  34.75
 8.06 Intr - 200745 200566  180  0  0   93  113   149 0.998  17.96
 8.05 Intr - 202315 202119  197  2  2   16   47   516 0.875  39.43
 8.04 Intr - 204632 204509  124  2  1   63   89   130 0.730  10.76
 8.03 Intr - 206326 205657  670  0  1 -114   55   491 0.131  17.31
 8.02 Intr - 207083 206554  530  2  2   47   94   540 0.970  42.23
 8.01 Intr - 213848 213760   89  0  2   82  110   106 0.622  11.89

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  22343  22488  146  0  2   56   54   117 0.935   3.17
S.002 Term - 137241 137072  170  1  2  118   48   110 0.811   8.04


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:123566408_123788157|GENSCAN_predicted_peptide_1|114_aa
RPAHWGGKCGPRTNSPGRTRSLLETQHLRACQTPKSKQEPLTPMHTGVQSTAAEPWSPKL
AMDGSSNLESCAPGEVSEVVESLVPGPSPAFVAWMCQYGDEQTPGAQVINFFKI

>gi568815588f:123566408_123788157|GENSCAN_predicted_CDS_1|345_bp
aggcctgcccactggggtgggaagtgtggtcctcggaccaacagccctggccgcaccagg
agccttttagaaacgcagcatctcagggcttgccagacccctaaatccaaacaagagccc
ctgacgcccatgcacaccggagtacagagcacagctgcagagccctggtcccctaagttg
gccatggatggcagcagcaacctggagagttgtgctcctggggaggtgtcggaggtagtg
gagtctctagtcccaggtccctctcccgcctttgtggcctggatgtgccaatacggtgat
gagcagactccaggggcccaagtgatcaacttctttaagatctga

>gi568815588f:123566408_123788157|GENSCAN_predicted_peptide_2|206_aa
MGSAITHLTESPRVPALHGGYLANNPPTQGWKRMEKEILALFMSTVQKGTSPQVERVLET
EWDAPVLFFNMATEPGSQAEPAPVEGAFPPAEEQGLIQRQQPVSHRLRSFRGPVPGGGDL
PVTSDSGPAQDEGTAEGAFDKSFNNFTGFRVRCRNVSVLEATGTAGPHSALGSQKKEEPW
FPCLDNEELAESDPEEGLCYGLNVSS

>gi568815588f:123566408_123788157|GENSCAN_predicted_CDS_2|621_bp
atgggttctgccatcacccatctcacagagagtccaagggttcctgccctgcatggaggc
tacctggccaacaacccacctacccaaggatggaaaaggatggaaaaggagattttggcg
ctctttatgtccacagtgcagaaagggaccagcccccaagtggaacgggttttggagact
gagtgggatgctcctgtcctgttcttcaacatggccacggagcctggaagtcaggcggag
ccggctcctgtggagggtgcattccctccggcagaggagcagggtctcattcagaggcag
cagcccgtctcccacaggcttcgctccttccgaggcccagttcctggtggaggagacctc
ccagtcaccagcgactcaggtcccgctcaggacgagggcacagcagagggcgccttcgac
aaatccttcaacaacttcactggcttcagagtcagatgtcgaaatgtctctgtcctggaa
gccactggaactgcaggtccccactctgcattaggcagccagaagaaagaggagccttgg
tttccttgtctggacaatgaggaacttgcagaaagtgaccctgaggaaggcctttgctat
ggtttgaatgtttcctcctaa

>gi568815588f:123566408_123788157|GENSCAN_predicted_peptide_3|92_aa
MIIGMTMFHHCHYLYRHHYHHHLHTTIIITIITGIIITLIIMIVIGESQGWGKIKKVQLQ
KSKPFVRCRTAFDNYGGDSDDLALPQHGALCH

>gi568815588f:123566408_123788157|GENSCAN_predicted_CDS_3|279_bp
atgattattggcatgacaatgtttcatcactgtcactatctctatcgccatcactaccat
catcatcttcacaccaccatcatcatcaccatcattactggcatcatcatcaccctcatc
atcatgattgtcattggagagtctcagggttgggggaagataaagaaagtacagcttcaa
aaatctaagccatttgtccgatgcagaacagcatttgacaactatggaggtgactctgat
gacctggctctacctcagcatggggccctgtgtcattga

>gi568815588f:123566408_123788157|GENSCAN_predicted_peptide_4|105_aa
MEQLKLSYTADSDTDTIQTTNYFGCITIVQGRFLNVTTIIIAFFILFVIFTAITYAFFIL
AIIIIGLLTPLTSFFTIHSPLLQRFWLNDQWFKQLGGGLDLGSIY

>gi568815588f:123566408_123788157|GENSCAN_predicted_CDS_4|318_bp
atggagcaactgaaactctcgtacactgctgattctgacacagacacaattcaaacaaca
aattattttggctgcattacaattgtccaaggcaggttccttaatgtcaccaccatcatc
attgccttcttcatccttttcgtcatcttcaccgccatcacctatgccttcttcatcctt
gccatcatcatcattggcctcctcaccccccttacctctttctttacaatacactccccc
ttgctccagaggttttggttaaatgaccaatggttcaagcagctgggtggaggcttggac
ctgggctccatctattga

>gi568815588f:123566408_123788157|GENSCAN_predicted_peptide_5|341_aa
MLGFLGGVTQGPGMWLHIQSYYILPLWVRQPGDPAEMVKEFHWGGAGGSDNQAENTAQGD
QKKEKKKKKKKKKKVLSLFSLFKMSHPADMLTLGDLYRQHIPQQKETPRLGINTCQTLEA
APGLFAILHKDLQPFSGPAPRSISTQHDLGELTFRLIYLVLAALMNVSTDRTIPGPPAQA
VVVGEWGLEWDKELGEIAFPEGSSPGNTRQAPLPHSSSEAGNEQGQTSLEVSLNPEKLLF
MNQFNASQSNTKEDQSHASLLLESACIANKEAAATTDTFNGFSKQGANSLAGCVPVSSVE
RNGFESGFYKNPMKNQICKSFKNRELLVGQGGETRRDLSPE

>gi568815588f:123566408_123788157|GENSCAN_predicted_CDS_5|1026_bp
atgcttggcttcctaggtggtgtgactcagggccctggcatgtggctgcacatccaatct
tactacatcttaccactctgggtacgacagccaggggaccctgctgaaatggtgaaggag
ttccactggggtggggctggggggtcagacaaccaagctgaaaacacagctcagggggac
caaaaaaaagaaaaaaagaagaagaagaagaaaaagaagaaagtattgtcactgttcagc
cttttcaagatgagtcacccagcagatatgctgactctaggtgacctctaccggcagcat
atcccccaacagaaggagactcccaggcttggcattaatacctgccagaccctggaggca
gctcctggcctttttgctatcctgcacaaggatttgcagccattttcaggaccagctccc
aggagcatatccacccaacacgacctgggagagctcaccttccggctcatctacctggtg
ctggctgctctgatgaacgtgagcacagacagaaccattccggggcctcctgctcaggct
gtggttgtgggtgagtgggggctggagtgggacaaagaactaggagaaatagcttttcct
gaaggctccagtcctgggaatacaagacaagctccactgcctcactccagctcagaggca
ggaaatgaacagggccagacatctttagaagtcagtttaaacccagagaagctgttgttc
atgaaccagttcaatgcctcgcagtctaacactaaggaagatcaatcacacgcttctctg
ctcctggagtcagcctgcattgcaaataaagaagctgctgccaccacagacacatttaat
ggattttcaaagcaaggtgcaaactcactggctggctgtgtgcctgtgagttcagtggag
aggaatggctttgagtcagggttctacaagaatcccatgaagaatcagatttgtaaaagc
tttaaaaatagagaactgctggtgggccaaggtggagagactagaagggacctatcccca
gaatga

>gi568815588f:123566408_123788157|GENSCAN_predicted_peptide_6|337_aa
MNSWDAGLAGLLVGTMGVSLLSNALVLLCLLHSADIRRQAPALFTLNLTCGNLLCTVVNM
PLTLAGVVAQRQPAGDRLCRLAAFLDTFLAANSMLSMAALSIDRWVAVVFPLSYRAKMRL
RDAALMVAYTWLHALTFPAAALALSWLGFHQLYASCTLCSRRPDERLRFAVFTGAFHALS
FLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQRAT
KKISTFIGTFLVCFAPYVITRLVELFSTVPIGSHWGVLSKCLAYSKAASDPFVYSLLRHQ
YRKSCKEILNRLLHRRSIHSSGLTGDSHSQNILPVSE

>gi568815588f:123566408_123788157|GENSCAN_predicted_CDS_6|1014_bp
atgaactcgtgggacgcgggcctggcggggctactggtgggcacgatgggcgtctcgctg
ctgtccaacgcgctggtgctgctctgcctgctgcacagcgcggacatccgccgccaggcg
ccggcgctcttcaccctgaacctcacgtgcgggaacctgctgtgcaccgtggtcaacatg
ccgctcacgctggccggcgtcgtggcgcagcggcagccggcgggcgaccgcctgtgccgc
ctggctgccttcctcgacaccttcctggctgccaactccatgctcagcatggccgcgctc
agcatcgaccgctgggtggccgtggtcttcccgctgagctaccgggccaagatgcgcctc
cgcgacgcggcgctcatggtggcctacacgtggctgcacgcgctcaccttcccagccgcc
gcgctcgccctgtcctggctcggcttccaccagctgtacgcctcgtgcacgctgtgcagc
cggcggccagacgagcgcctgcgcttcgccgtcttcactggcgccttccacgctctcagc
ttcctgctctccttcgtcgtgctctgctgcacgtacctcaaggtgctcaaggtggcccgc
ttccattgcaagcgcatcgacgtgatcaccatgcagacgctggtgctgctggtggacctg
caccccagtgtgcgggaacgctgtctggaggagcagaagcggaggcgacagcgagccacc
aagaagatcagcaccttcatagggaccttccttgtgtgcttcgcgccctatgtgatcacc
aggctagtggagctcttctccacggtgcccatcggctcccactggggggtgctgtccaag
tgcttggcgtacagcaaggccgcatccgacccctttgtgtactccttactgcgacaccag
taccgcaaaagctgcaaggagattctgaacaggctcctgcacagacgctccatccactcc
tctggcctcacaggcgactctcacagccagaacattctgccggtgtctgagtga

>gi568815588f:123566408_123788157|GENSCAN_predicted_peptide_7|238_aa
MGACLVRGPVVTELSVGPEMVSDQLPGECEERRATGTSEATLGTNRWLEAAQTSDIIQGT
FINRKNVAGQRVEAPANTTSCLPMWLGLHSLANELQDQAFQKVKSQYASTYQALLVSSIM
PPWTWLFVENKQVPKLPSVTKDCQNPRLLWGPAGSKSETQTQEGHSTSNAKTYEEIDEIW
KIQANKVHLLAEGPEMEPDAVESLGFRELEKSGAQRMGSWPLPSPPSPDREPDSCAHA

>gi568815588f:123566408_123788157|GENSCAN_predicted_CDS_7|717_bp
atgggagcctgcctggtgaggggtccagtggtgacagagctcagtgtgggtccagagatg
gtgtcagaccagctcccaggggaatgtgaagaaaggagggccacaggcaccagtgaggcc
accctggggacaaacaggtggttagaggcagctcagacctcagacattatccagggcact
tttataaacaggaaaaatgtggccgggcaaagagtagaggctcctgctaacaccaccagc
tgcctccccatgtggcttggactccacagtttggccaatgagctccaagatcaagcgttc
caaaaggtcaagtcccagtatgcaagcacttaccaagctctgcttgtcagttcaataatg
cctccctggacttggctctttgttgaaaacaaacaagtacccaaactaccttctgtcacc
aaagactgccagaatcccaggctcctgtggggaccagctggctccaaatcagagacacag
actcaggaaggacactcaaccagcaatgcaaagacttacgaagagattgatgagatctgg
aaaatacaagcaaataaggtgcatctgttggcagaaggcccagagatggaacctgatgct
gtggagtcactgggcttccgggagctggaaaagagcggtgcccaaaggatgggatcatgg
cctttgccatctccccctagtcccgacagggagcctgacagctgtgctcatgcttag

>gi568815588f:123566408_123788157|GENSCAN_predicted_peptide_8|936_aa
XPNNYYHRRNEMTTTDDLDFKHHNYKEMRQCSEWAIKKQEITVRKVITTTEGGENHNEGS
EIHNKGSDNHNQGNDDHNEGGDDHNQGGDNHDQGSDNHNEGGDDHNQGGDNHNQGSDNHN
EGADDHNERDKNHNQGGNNHNQGADNHNEGGGDHNNSDKNHNQRGDNHNQGSDNHNQGND
DHKEGGDAHNQRGENHNKGGGDHKQESDKNHNQRGVNHNQESDNHDQGSDDHKEGGDDHS
KGSDNHDQGSDDHNGGGNDHSKGSDNHDQGGDDHNQGGDNYTQGSDNCNQGSDNHDQGGD
NYTQGGDNYTQGSDNQNKAGDDHNQGGDNHTQGGDNCKRGSDNHDQGGGDYNQGGENHNS
EGENHNQGSDSYSNGGDNHNQGGDNHNQGGGNHNEGGDDHNQRGNNHNQGGDSHSQGRCH
HNQGVDNHNQLMKVVNEMCPNITRIYNIGKSHQGLKLYAVEISDHPGEHEVGEPEFHYIA
GAHGNEVLGRELLLLLVQFVCQEYLARNARIVHLVEETRIHVLPSLNPDGYEKAYEGGSE
LGGWSLGRWTHDGIDINNNFPDLNTLLWEAEDRQNVPRKVPNHYIAIPEWFLSENATVAA
ETRAVIAWMEKIPFVLGGNLQGGELVVAYPYDLVRSPWKTQEHTPTPDDHVFRWLAYSYA
STHRLMTDARRRVCHTEDFQKEEGTVNGASWHTVAGSLNDFSYLHTNCFELSIYVGCDKY
PHESQLPEEWENNRESLIVFMEQVHRGIKGLVRDSHGKGIPNAIISVEGINHDIRTGEKQ
KLKEGSDPLMVKGLVGFGFRFLTPRSLLRRHPLSATNPDPYEHGTPPRCTVGPSYLPQLC
PFPVACLPSNTPPNDGDYWRLLNPGEYVVTAKAEGFTASTKNCMVGYDMGATRCDFTLSK
TNMARIREIMEKFGKQPVSLPARRLKLRGQKRRQRG

>gi568815588f:123566408_123788157|GENSCAN_predicted_CDS_8|2811_bp
natcctaataattattatcaccgccggaacgagatgaccaccactgatgacctggatttt
aagcaccacaattataaggaaatgcgccagtgtagtgagtgggcaataaagaagcaggaa
atcacagtgagaaaagtaatcaccaccacagagggaggtgagaaccacaacgagggaagt
gagatccacaacaaaggaagtgataaccacaaccaggggaatgatgaccacaatgaggga
ggtgatgaccacaaccagggaggtgataaccacgaccagggaagtgataaccacaatgag
ggaggtgatgaccacaaccagggaggtgataaccacaaccagggaagtgataaccacaat
gagggagctgatgaccacaatgagagagataaaaaccacaaccagggaggcaataaccac
aaccagggagctgataaccacaatgagggagggggtgaccacaataacagcgataagaac
cacaaccagagaggtgataaccacaatcagggaagtgataaccacaaccaggggaatgat
gaccacaaagagggaggtgatgctcacaatcagagaggtgagaaccacaacaagggaggt
ggtgaccacaaacaagagagtgataagaaccacaaccagagaggtgttaaccacaatcag
gaaagtgataaccatgaccaggggagtgatgaccacaaagagggaggtgatgatcacagt
aagggaagtgataaccatgaccaggggagtgatgaccacaatggaggaggtaatgaccac
agtaagggaagtgataaccatgaccagggaggtgatgaccacaaccagggaggtgataac
tacacccaggggagtgataactgcaaccaggggagtgataaccatgaccagggaggtgac
aactacacccagggaggtgataactacacccagggcagtgataaccagaacaaggcaggt
gatgatcacaaccagggaggtgataaccacacccagggaggtgataactgcaaacggggg
agtgataaccatgaccagggaggtggtgactacaaccagggaggtgagaaccacaacagt
gaaggtgagaaccacaaccagggtagcgatagctatagcaatggaggtgataaccacaac
cagggaggtgataaccacaaccagggaggtggtaaccacaacgaaggaggtgatgatcac
aaccaaagaggtaataaccacaaccagggaggtgatagccacagtcagggaagatgtcac
cataaccagggagttgataatcacaaccaattgatgaaagttgtgaatgaaatgtgtccc
aatatcaccagaatttacaacattggaaaaagccaccagggcctgaagctgtatgctgtg
gagatctcagatcaccctggggagcatgaagtcggtgagcccgagttccactacatcgcg
ggggcccacggcaatgaggtgctgggccgggagctgctgctgctgctggtgcagttcgtg
tgtcaggagtacttggcccggaatgcgcgcatcgtccacctggtggaggagacgcggatt
cacgtcctcccctccctcaaccccgatggctacgagaaggcctacgaagggggctcggag
ctgggaggctggtccctgggacgctggacccacgatggaattgacatcaacaacaacttt
cctgatttaaacacgctgctctgggaggcagaggatcgacagaatgtccccaggaaagtt
cccaatcactatattgcaatccctgagtggtttctgtcggaaaatgccacggtggctgcc
gagaccagagcagtcatagcctggatggaaaaaatcccttttgtgctgggcggcaacctg
cagggcggcgagctggtggtggcgtacccctacgacctggtgcggtccccctggaagacg
caggaacacacccccacccccgacgaccacgtgttccgctggctggcctactcctatgcc
tccacacaccgcctcatgacagacgcccggaggagggtgtgccacacggaggacttccag
aaggaggagggcactgtcaatggggcctcctggcacaccgtcgctggaagtctgaacgat
ttcagctaccttcatacaaactgcttcgaactgtccatctacgtgggctgtgataaatac
ccacatgagagccagctgcccgaggagtgggagaataaccgggaatctctgatcgtgttc
atggagcaggttcatcgtggcattaaaggcttggtgagagattcacatggaaaaggaatc
ccaaacgccattatctccgtagaaggcattaaccatgacatccgaacaggtgaaaaacag
aagctcaaggagggcagtgacccactgatggttaaggggttagtggggtttggcttcagg
tttctgacccccaggtctttgctcagacgtcaccctctcagtgcaaccaaccctgacccc
tatgagcatggcacacctccccgctgcactgttggtccctcttacctgccccaactttgt
cccttccccgtggcatgtctcccttctaacacaccacccaacgatggggattactggcgc
ctcctgaaccctggagagtatgtggtcacagcaaaggccgaaggtttcactgcatccacc
aagaactgtatggttggctatgacatgggggccacaaggtgtgacttcacacttagcaaa
accaacatggccaggatccgagagatcatggagaagtttgggaagcagcccgtcagcctg
ccagccaggcggctgaagctgcgggggcagaagagacgacagcgtgggtga