FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1772, 279 aa 1>>>pF1KE1772 279 - 279 aa - 279 aa Library: human.CCDS.faa 18921897 residues in 33420 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.9587+/-0.000696; mu= 1.3782+/- 0.042 mean_var=241.5875+/-47.507, 0's: 0 Z-trim(118.6): 6 B-trim: 0 in 0/54 Lambda= 0.082516 statistics sampled from 19848 (19854) to 19848 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.594), width: 16 Scan time: 1.660 The best scores are: opt bits E(33420) CCDS7455.1 FRAT1 gene_id:10023|Hs109|chr10 ( 279) 1913 239.4 2.2e-63 CCDS7456.1 FRAT2 gene_id:23401|Hs109|chr10 ( 233) 872 115.4 4e-26 >>CCDS7455.1 FRAT1 gene_id:10023|Hs109|chr10 (279 aa) initn: 1913 init1: 1913 opt: 1913 Z-score: 1251.5 bits: 239.4 E(33420): 2.2e-63 Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279) 10 20 30 40 50 60 pF1KE1 MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLVAQIGETLQLDAAQHSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLVAQIGETLQLDAAQHSP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGDRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 ASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGDRGR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGIPQPLSGPCRRGWLRGAAASR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 VRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGIPQPLSGPCRRGWLRGAAASR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVRRLHSRRLQLRAKLPQRPLLGPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 RLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVRRLHSRRLQLRAKLPQRPLLGPL 190 200 210 220 230 240 250 260 270 pF1KE1 SAPVHEPPSPRSPRAACSDPGASGRAQLRTGDGVLVPGS ::::::::::::::::::::::::::::::::::::::: CCDS74 SAPVHEPPSPRSPRAACSDPGASGRAQLRTGDGVLVPGS 250 260 270 >>CCDS7456.1 FRAT2 gene_id:23401|Hs109|chr10 (233 aa) initn: 1169 init1: 868 opt: 872 Z-score: 582.8 bits: 115.4 E(33420): 4e-26 Smith-Waterman score: 1136; 71.2% identity (78.0% similar) in 264 aa overlap (1-263:1-231) 10 20 30 40 50 60 pF1KE1 MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLVAQIGETLQLDAAQHSP :::::::::::::::::::::.::::::::::.:::::::::::::::::::::::: :: CCDS74 MPCRREEEEEAGEEAEGEEEEDDSFLLLQQSVTLGSSGEVDRLVAQIGETLQLDAAQDSP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGDRGR ::::.:::.:::::::::::::::::: :::::::::: :::::::: :.:::::::::: CCDS74 ASPCAPPGVPLRAPGPLAAAVPADKARPPAVPLLLPPASAETVGPAPSGALRCALGDRGR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGIPQPLSGPCRRGWLRGAAASR ::::::::::::.:.::::: :: :::::::: :..:: CCDS74 VRGRAAPYCVAEVAAGPSAL------------PG------------PCRRGWLRDAVTSR 130 140 150 190 200 210 220 230 240 pF1KE1 RLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVRRLHSRRLQLRAKLPQRPLLGPL :::::: .: .:.::::::::::::::::::::::::::. . : :: CCDS74 RLQQRRWTQAGARAGDDDPHRLLQQLVLSGNLIKEAVRRLQRAVAAVAAT-------GPA 160 170 180 190 200 250 260 270 pF1KE1 SAPVHEPPSPRS-PRAACSDPGASGRAQLRTGDGVLVPGS ::: : . :: : .:..: CCDS74 SAP--GPGGGRSGPDRIALQPSGSLL 210 220 230 279 residues in 1 query sequences 18921897 residues in 33420 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Oct 24 21:44:33 2019 done: Thu Oct 24 21:44:33 2019 Total Scan time: 1.660 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]