GENSCAN 1.0	Date run:  6-Nov-116	Time: 15:36:17

Sequence gi568815588r:5399001_5599438 : 200438 bp : 46.85% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 Intr -   2087   1844  244  2  1   35   55   211 0.192   9.57
 1.01 Init -   5792   5790    3  2  0   67  115     0 0.231   0.60
 1.00 Prom -   7709   7670   40                              -4.76

 2.00 Prom +  10341  10380   40                              -5.86
 2.01 Init +  11616  11732  117  2  0   81  101    26 0.370   3.40
 2.02 Intr +  13618  13820  203  0  2   69  105   125 0.433  10.38
 2.03 Intr +  27655  27721   67  1  1   64   97    14 0.209  -1.19
 2.04 Intr +  30170  30229   60  1  0   81  121    66 0.439   8.13
 2.05 Intr +  47703  47858  156  2  0   -4   94    92 0.006   0.81
 2.06 Intr +  53358  53525  168  2  0   61   69    80 0.823   3.54
 2.07 Intr +  53858  53920   63  1  0   79   86    38 0.753   1.61
 2.08 Intr +  54250  54346   97  0  1  115   72    14 0.995   2.08
 2.09 Intr +  54484  54560   77  2  2   92   71    87 0.879   6.63
 2.10 Intr +  55265  55522  258  1  0   67   87   118 0.949   7.26
 2.11 Intr +  55948  56118  171  0  0   84   53   224 0.939  18.64
 2.12 Intr +  57087  57273  187  2  1   59   93   129 0.898   9.76
 2.13 Term +  57588  57994  407  1  2  114   44   416 0.998  35.15
 2.14 PlyA +  61379  61384    6                               1.05

 3.00 Prom +  61727  61766   40                              -2.56
 3.01 Init +  66676  66745   70  0  1   84   97    89 0.953  10.61
 3.02 Intr +  69390  69592  203  1  2   19    4   163 0.219   0.00
 3.03 Intr +  70380  70396   17  2  2  131  103    10 0.231   1.14
 3.04 Term +  81397  81550  154  1  1  131   48    91 0.189   6.79
 3.05 PlyA +  84045  84050    6                              -0.45

 4.00 Prom +  85257  85296   40                              -0.96
 4.01 Init +  86218  86359  142  0  1   81   53   118 0.395   6.31
 4.02 Term +  92465  92649  185  0  2   98   44    82 0.315   2.51
 4.03 PlyA +  95285  95290    6                               1.05

 5.02 PlyA -  96543  96538    6                               1.05
 5.01 Sngl - 100438  99998  441  1  0  100   54   970 0.996  91.05
 5.00 Prom - 102322 102283   40                              -8.66

 6.10 PlyA - 102539 102534    6                               1.05
 6.09 Term - 103160 103104   57  2  0   65   54    86 0.351   0.59
 6.08 Intr - 104778 104720   59  1  2  103   77    -5 0.162  -1.50
 6.07 Intr - 109639 109525  115  1  1  -11   94   131 0.534   3.82
 6.06 Intr - 110493 110441   53  1  2   73   48    72 0.695   0.33
 6.05 Intr - 112834 112621  214  1  1   40   81    91 0.415   1.89
 6.04 Intr - 113234 112950  285  2  0   66   40   166 0.371   7.14
 6.03 Intr - 114026 113975   52  1  1   41   71    47 0.182  -2.79
 6.02 Intr - 114147 114114   34  1  1   75  100    45 0.162   1.68
 6.01 Init - 122985 122916   70  0  1   68   93    99 0.486   9.61
 6.00 Prom - 123247 123208   40                             -10.55

 7.00 Prom + 123282 123321   40                              -7.86
 7.01 Init + 126086 126531  446  1  2   77   61  1178 0.295 109.49
 7.02 Intr + 129984 130267  284  0  2   76   73    55 0.230  -0.14
 7.03 Intr + 130850 131032  183  0  0   61   64   106 0.308   5.26
 7.04 Intr + 133801 133831   31  2  1  122   82    -3 0.150  -0.31
 7.05 Intr + 139791 139817   27  0  0  136   88     1 0.055   2.13
 7.06 Intr + 151267 151393  127  1  1  103   59    51 0.016   4.38
 7.07 Intr + 152914 153044  131  0  2   89   82     1 0.017  -0.91
 7.08 Intr + 161547 161692  146  0  2   37   89    71 0.033   2.03
 7.09 Intr + 163533 163707  175  1  1  104   64    60 0.260   4.20
 7.10 Intr + 164342 164485  144  2  0   66   48   108 0.214   4.00
 7.11 Intr + 175132 175210   79  1  1   40   -3    94 0.051  -4.95
 7.12 Intr + 175736 175954  219  1  0  100   37   120 0.457   6.60
 7.13 Term + 177869 178018  150  1  0   68   47    85 0.632   0.31
 7.14 PlyA + 180692 180697    6                               1.05

 8.04 PlyA - 181022 181017    6                               1.05
 8.03 Term - 182776 182756   21  1  0  130   49    -3 0.355  -1.69
 8.02 Intr - 184905 184711  195  0  0   99   87    45 0.065   5.11
 8.01 Init - 192042 191881  162  0  0   37   84   124 0.194   4.66

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  47766  47858   93  2  0   90   94    34 0.900   4.58
S.002 Intr - 184862 184711  152  0  2   46   87    73 0.820   2.88


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:5399001_5599438|GENSCAN_predicted_peptide_1|83_aa
MRECLSIHIGQAGIQIGDACWELYCLEHGIQPNGVVLDTQQDQLENAKMEHTNASFDTFF
CETRAGKHVPRALFVDLEPTVIX

>gi568815588r:5399001_5599438|GENSCAN_predicted_CDS_1|249_bp
atgagggagtgcctttccatccacatcggtcaagctggcatccagattggggacgcctgc
tgggaactctattgcctggaacatggaatccagccaaatggcgttgttcttgacactcaa
caggatcagctggaaaatgcaaaaatggagcacacaaatgcatctttcgataccttcttc
tgtgagacaagagctgggaagcatgtgcctagagcactcttcgtggacttggagccaact
gttatagnn

>gi568815588r:5399001_5599438|GENSCAN_predicted_peptide_2|676_aa
MGKVEQKWFLTKVNLCSELVPSGGFMVSLTSRMKPWTFMRLAGIVPVPAGLPGTRPPPHP
LLRAMEPELAAQKQPRPRRRSRRASGLSTEGATGPSADTSGSELDGRCSLRRGSSFTFLT
PGPNWDFTLKRKRREKDDDVVSLSSLDLKRRYSADSVWIDWKGLREYLGSMVAHDETGGL
LPIKRTIRVLDVNNQSFREQESFTLRGDHRSPASAQKFSSRSTVPTPAKRRSSALWSEML
DITMKESLTTREIRRQEAIYEMSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFG
DLDSYIPLHEDLLTRIGEATKPDGTVEQIGHILVSWLPRLNAYRGYCSNQLAAKALLDQK
KQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLE
DAILIIQGVLSDINLKKGESECQYYIDKLEYLDEKQRDPRIEASKVLLCHGELRSKSGHK
LYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFSNSE
KAKNIFRIRFHDPSPAQSHTLQANDVFHKQQWFNCIRAAIAPFQSAGSPPELQGLPELHE
ECEGNHPSARKLTAQRRASTVSSVTQVEVDENAYRCGSGMQMAEDSKSLKTHQTQPGIRR
ARDKALSGGKRKETLV

>gi568815588r:5399001_5599438|GENSCAN_predicted_CDS_2|2031_bp
atggggaaggtagaacagaagtggttcttgaccaaggtcaacttatgttcagagctggtt
ccttccggtgggttcatggtctcgctgacttcaagaatgaagccatggaccttcatgagg
ctggcgggcatcgtgcccgtccctgccggtctcccgggcacccggccaccgccccacccc
ctcctccgtgccatggagcccgagctggcggctcagaagcagcctcgaccgcggaggcga
agccgccgggcctctgggctcagcacggagggagcgacggggccttcggccgacacctcc
gggtcggagctggacgggagatgttcccttcggagaggcagctccttcacattcttaaca
cctggccccaactgggacttcactttgaaaagaaaacgcagagagaaagatgatgatgtt
gtaagccttagcagccttgatctgaagcgtcgctacagcgctgactcggtgtggattgat
tggaaaggtttgagggagtacttgggaagcatggtggcacatgatgagactggaggtctc
ctacctattaaaaggaccatacgagtcctagatgtcaataaccagtccttcagagaacaa
gagtcatttacccttcgtggtgaccacagatccccagcctctgcccagaagttttctagc
aggtcaacagtcccaacacccgccaagagaaggagcagtgcactgtggtcagagatgctg
gacatcaccatgaaggagtctctcaccaccagggagatcagacggcaggaggcaatatat
gaaatgtcccgaggtgaacaggatttaattgaggatctcaaacttgcaagaaaggcctat
catgaccccatgttaaagttgtccatcatgtcagaagaggaactcacacatatatttggt
gatctggactcttacatacctctgcatgaagatttgttgacaagaataggagaagcaacc
aagcctgatggaacagtggagcagattggtcacattctcgtgagctggttaccgcgcttg
aatgcctacagaggttactgtagtaaccagctggcagccaaagctcttcttgatcaaaag
aaacaggatccaagagtccaagacttcctccagcgatgtctcgagtctcccttcagtcga
aaactagatctttggagtttcctagatatccctcgaagtcgcctagtcaaatacccttta
ctgttaaaagaaattcttaaacacactccaaaagagcaccctgatgttcagcttctggag
gatgctatattgataatacagggagtcctctctgatatcaacttgaagaaaggtgaatcc
gagtgccagtattacatcgacaagctggagtacctggatgaaaagcagagggaccccaga
atcgaagcgagcaaagtgctgctgtgccatggggagctgcggagcaagagtggacataaa
ctttacattttcctgtttcaagacatcttggttctgactcggcccgtcacacggaacgaa
cggcactcttaccaggtttaccggcagccaatcccagtccaagagctagtcctagaagac
ctgcaggatggagatgtgagaatgggaggctcctttcgaggagctttcagtaactcagag
aaagctaaaaatatctttagaattcgcttccatgacccctctccagcccagtctcacact
ctgcaagccaatgacgtgttccacaagcagcagtggttcaactgtattcgagcggccatt
gcccccttccagtcggcaggcagtccacctgagctgcagggcctgccggagctgcacgaa
gagtgtgaggggaaccacccctctgcgaggaaactcacagcccagaggagggcatccaca
gtttccagtgttactcaggtagaagttgatgaaaacgcttacagatgtggctctggcatg
cagatggcagaggacagcaagagcttaaagacacaccagacacagcccggcatccgaaga
gcgagggacaaagccctttctggtggcaaacggaaagagactttggtgtag

>gi568815588r:5399001_5599438|GENSCAN_predicted_peptide_3|147_aa
MVELCRYTFVQTHTMYNTKNEPSERSKTGKTEASRRQPAPTACCRREPQSSLQMMEPQSS
LQMMQPHLLLSGCSLMGDVETAIQLSSPQRNGAGKEPFFKDDAKFKVTTTPRDGASASFP
TWVHVRLCPTNARCLLELSSSAVHCHS

>gi568815588r:5399001_5599438|GENSCAN_predicted_CDS_3|444_bp
atggtggagctatgtcgttatacatttgtccaaacccacacgatgtacaacaccaagaac
gagccttcagagaggtccaagacaggaaaaactgaggcctcccgcagacagccagcaccc
actgcctgctgcaggagggagccccagtcgagccttcagatgatggagccccagtcgagc
cttcagatgatgcagccccacctgctgctctctggctgcagcctcatgggagatgttgag
acagccatccagctgagcagcccccagagaaatggtgcaggaaaagaacccttcttcaaa
gatgatgccaagttcaaggtcacgacaactccccgtgacggagcctctgcttctttcccc
acgtgggtccacgtgaggctctgccccaccaatgcccggtgccttctagaactcagtagc
tcagctgtccactgccactcatga

>gi568815588r:5399001_5599438|GENSCAN_predicted_peptide_4|108_aa
MVPSRSPHLFSTQRVVFSAAAEHTPSVHHSRHMGLPGPSSRNRFQVRNLQISTELPATAL
FVGGSPLPPSLGPTAKATALAWAPRLPDAKSATSLEQALALGFQTVFP

>gi568815588r:5399001_5599438|GENSCAN_predicted_CDS_4|327_bp
atggttcctagcaggtccccccatcttttcagcacccagcgtgtggtcttctcggcggca
gctgagcacactccttctgtccaccattcccgacacatgggtcttcctggtccttcctct
cggaaccggttccaggttagaaacctccaaatcagcacagagcttcctgccacagccctc
tttgtagggggctcacccctgcccccctccctgggtccaactgccaaggccacagccctg
gcatgggcacccagactccctgatgccaagtcggccacaagcctggagcaggccttggct
ctgggattccagactgtattcccatga

>gi568815588r:5399001_5599438|GENSCAN_predicted_peptide_5|146_aa
MAGELTPEEEAQYKKAFSAVDTDGNGTINAQELGAALKATGKNLSEAQLRKLISEVDSDG
DGEISFQEFLTAAKKARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELD
AMIREADVDQDGRVNYEEFARMLAQE

>gi568815588r:5399001_5599438|GENSCAN_predicted_CDS_5|441_bp
atggccggtgagctgactcctgaggaggaggcccagtacaaaaaggctttctccgcggtt
gacacggatggaaacggcaccatcaatgcccaggagctgggcgcggcgctgaaggccacg
ggcaagaacctctcggaggcccagctaaggaaactcatctccgaggttgacagcgacggc
gacggcgaaatcagcttccaggagttcctgacggcggcgaagaaggccagggccggcctg
gaggacctgcaggtcgccttccgcgccttcgaccaggatggcgacggccacatcaccgtg
gacgagctcaggcgggccatggcggggctggggcagccgctgccgcaggaggagctggac
gccatgatccgcgaggccgacgtggaccaggacgggcgggtgaactacgaggagttcgcg
aggatgctcgcccaggagtga

>gi568815588r:5399001_5599438|GENSCAN_predicted_peptide_6|312_aa
MDKDRNTVIPPAHLTNDQDEKPTEVLREVRGGKGSCHGSGPHVYNGRHGSVQGVLKERWL
GRRILQRKGEKGLEVTHGFLEGSGEQGLRGCGSQAPGQEALHGNRSMNSTEVRPGTDPKA
ATFVEIRFDVHFGSAEKVDSVLQNGPARALRPLCVSAAPGLRTSGWCRQSSAAKEFTGRV
SCQAADTLCVEPEEVLCEISPCGKKEAEARGWSNHTPDGNRGSGGFDVVLPSLGTEARAE
KEGPKELSTPGCDQELNVPEEGPGPRAAGEGRTPHHTLHTGPSHFPGAALSSEKKTHIVR
IVTIILSRDETA

>gi568815588r:5399001_5599438|GENSCAN_predicted_CDS_6|939_bp
atggacaaggacaggaatacggtcatacctcctgcccacttgaccaacgaccaggatgag
aagccaacagaagtccttcgagaggttcgtgggggcaaaggaagctgtcatggctcaggt
cctcatgtgtacaatgggcgccatggcagcgtccagggagtcctgaaggaacgatggtta
gggcggagaatcctgcagaggaaaggagagaaaggactagaggtcacacacggcttcttg
gaggggagcggggagcaggggctccgaggctgcgggtcgcaggctccagggcaggaagct
ctccatgggaaccgtagtatgaattccaccgaggtgcgtcccggcacagacccgaaggca
gccacatttgtggaaataagatttgacgtgcatttcggatccgcagagaaggtggactct
gttttgcagaatggaccagcgcgcgcactgaggccactttgtgtcagcgcagcgcctggc
ctgaggacctcagggtggtgtcggcaaagttccgctgccaaggagttcacgggccgtgtt
tcctgccaggccgcagacactctctgcgtggagcccgaggaggttctgtgtgagatctca
ccctgcgggaagaaagaggcggaggctcggggttggtccaatcacacccctgatggtaac
cggggcagcggtggcttcgatgtggttctgcccagtttgggcaccgaggcgcgggcagag
aaagaggggcccaaggagctgtcgacccctggttgcgatcaggagctgaacgtgcccgag
gaagggcctggacccagggcagccggtgagggacgaacaccacatcacaccctccacaca
ggcccttctcatttccctggggctgccctgtcctcagagaagaaaacgcacatcgtgaga
atagtgaccatcatcctgtctcgtgatgagacagcctga

>gi568815588r:5399001_5599438|GENSCAN_predicted_peptide_7|713_aa
MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDG
NGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE
EVDEMIRAADTDGDGQVNYEEFVRVLVSNWVTALTTVSTVCCHMALPPPNLLCWGKEDQA
RGGRSSDSALWHGSFCLTGRDAQGTPCPHQQTPNPQYECISHRASIADLHGMASATLTQF
THGNYIKLASDSRVSNFKSNAAQPCRLLFILKDSKGLFKGSQNQPAKNDPRLPLEKCGIK
TRVWGSVQRFLPDSGSCPPGECSSFLSAPHCGVQQGDSGKGQEMQLPPGSWKLLTSQVAS
EDLQNREGRNLHRQGPGFRQKTTPTPATWIRKIPVHTCMGVKLLTWWLKSLAINQSIHSC
LLRTAGKRKHDIGAQRAWLELQRPGKIFSGQKHNTTPYESHKSSTKQLLLPHRTIYGASY
WTATYDLPSPPQNRSTKLPPHCSLTQTKIPPLSAREEPTSAAPRQVPLTDPLLQPPVQVA
APGLDTGWRVIVVVASESAKRCCHLAWACYEVILQEVQDNRQLLHQSEWYRDFTLPCTWF
MIQHILQDPKATGQGPSCTHRHLLLSGSHRKRAVTLNNTGYGTLKGTSTDAQPARADART
LPAQGLVPELRTLYSGKQKAALGPRAPLRVCTCSDADTRACTRLHMYTLTGTC

>gi568815588r:5399001_5599438|GENSCAN_predicted_CDS_7|2142_bp
atggccgaccagctgactgaggagcaggtcacagaattcaaggaggccttctccctgttt
gacaaggatggggacggctgcatcaccacccgcgagctgggcacggtcatgcggtccctg
ggccagaaccccacggaggccgagctgcgggacatgatgagtgagatcgaccgggacggc
aacggcaccgtggacttccccgagttcctgggcatgatggccaggaagatgaaggacacg
gacaacgaggaggagatccgcgaggccttccgcgtgttcgacaaggacggcaacggcttc
gtcagcgccgccgagctgcgacacgtcatgacccggctgggggagaagctgagtgacgag
gaggtggacgagatgatccgggccgcggacacggacggagacggacaggtgaactacgag
gagtttgtccgtgtgctggtgtccaactgggtcactgccctcaccacagtgagcaccgtc
tgctgccacatggctctgccccctcccaaccttctgtgttggggtaaggaagaccaggcc
agagggggacgcagctctgacagtgctctctggcacggctccttctgcctcacggggcgt
gatgcccagggaaccccctgccctcaccagcagaccccaaacccacagtatgaatgcatc
tctcaccgggctagcattgctgacctccacggcatggcatcagctactctgactcagttc
acccacggcaactatataaagctcgcctctgactcccgtgtttccaattttaaatcgaat
gcagcccagccctgccggctcctgtttatcctcaaagattccaaaggcctgttcaaaggc
tcccagaaccagccagctaaaaatgacccacggcttccgctagagaaatgtggtatcaaa
actcgtgtatggggctctgtccagaggttcttacctgacagtgggtcctgccctccaggg
gaatgttccagcttcttgtctgcaccacactgtggagtccagcaaggtgactcagggaag
ggacaggagatgcagctacctcctggttcctggaagcttctgacatcccaggtggcctct
gaagatctgcagaatagggaggggaggaatctgcacagacaagggccagggttcagacag
aagacaacgcccacaccagccacttggatccggaagattcctgtacacacttgcatgggt
gtaaaattactaacctggtggctaaagagccttgcgatcaaccagtcaatccatagctgc
ttgttgagaacagcgggaaaacggaaacatgatattggcgctcagagagcttggctggag
ctccagagaccagggaaaatcttcagtggccaaaagcacaacacgacaccttacgagtct
cacaagtcctccacaaagcagctgcttctgcctcacagaaccatttatggggccagttac
tggactgctacctatgaccttccatctccaccccagaaccgaagcacaaaactcccacct
cattgctccctgacccagacgaaaattcctcccctctcagccagagaggaacccacttct
gcagccccccgtcaggtccccctcacagacccacttctgcagccccctgtccaagtcgct
gccccaggtctggacacgggctggagggtcatcgtggtagttgcctctgagtcagcaaaa
cgctgctgtcaccttgcctgggcctgctacgaggtcatcttacaggaggttcaggacaat
aggcagctgctccaccagagtgagtggtacagggacttcaccctcccctgcacctggttc
atgatccagcacattcttcaggatccaaaggccacagggcagggtcccagctgcactcac
aggcacctgctgctttctggcagtcatcgtaaacgcgcagtgaccttaaataatacaggc
tacgggacactcaaaggcacgtccacagatgcacagccagcccgtgcagacgctcggacg
ctgcctgcccagggcctagtccctgagctcaggaccttgtactcagggaaacagaaggca
gccctgggccccagagctcccctgcgagtgtgcacatgctcagatgctgacacccgagcc
tgcacacgcctgcacatgtatacgctcacaggcacatgctga

>gi568815588r:5399001_5599438|GENSCAN_predicted_peptide_8|125_aa
MLGLHSPRQSEGFLGFLTLLTPPSPWPLEREGFWLCFLLECPPLHLFVIALLFGTLFPPL
TCGASSGTGSETTAVGQRSTYCLRASRAEQTCLRFSLQLVIWETGQLRLLPGQPVVRKKI
PLKHF

>gi568815588r:5399001_5599438|GENSCAN_predicted_CDS_8|378_bp
atgctggggctgcactcaccccgccagtctgaagggttcctgggctttctcaccctcctg
accccgccctccccctggcccctggagcgggagggcttctggctctgcttcctgctcgag
tgccctccactccatctctttgtcattgccttactttttgggaccctgttccctcccctt
acttgcggggcatcctcggggacaggttctgaaaccacagctgtgggccagcgttccacc
tattgtctgcgagccagcagagcagaacaaacctgcctgagattctcattacagcttgtg
atttgggagacgggccagctgcggctgttgccagggcaaccagtggtgcggaaaaagatc
ccattaaaacacttctga