FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2462, 118 aa 1>>>pF1KE2462 118 - 118 aa - 118 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.9607+/-0.000328; mu= -1.5912+/- 0.020 mean_var=145.0846+/-29.057, 0's: 0 Z-trim(119.4): 4 B-trim: 0 in 0/52 Lambda= 0.106479 statistics sampled from 33385 (33389) to 33385 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.391), width: 16 Scan time: 4.950 The best scores are: opt bits E(85289) NP_004879 (OMIM: 607296) V-type proton ATPase subu ( 118) 745 124.8 3.2e-29 NP_569730 (OMIM: 606853) V-type proton ATPase subu ( 118) 497 86.7 9.4e-18 NP_612139 (OMIM: 606853) V-type proton ATPase subu ( 77) 267 51.3 2.8e-07 NP_001191007 (OMIM: 606853) V-type proton ATPase s ( 78) 216 43.5 6.5e-05 >>NP_004879 (OMIM: 607296) V-type proton ATPase subunit (118 aa) initn: 745 init1: 745 opt: 745 Z-score: 645.6 bits: 124.8 E(85289): 3.2e-29 Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KE2 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING 70 80 90 100 110 >>NP_569730 (OMIM: 606853) V-type proton ATPase subunit (118 aa) initn: 546 init1: 497 opt: 497 Z-score: 439.7 bits: 86.7 E(85289): 9.4e-18 Smith-Waterman score: 497; 64.1% identity (89.7% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE2 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA ::::::::::::::::::::::..::::: ::::::::::: :.:::: .::.::..:. NP_569 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING ::.::.:. :.:::. :.... .:. ..::..:: .::..:::.::..: ::::. NP_569 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA 70 80 90 100 110 >>NP_612139 (OMIM: 606853) V-type proton ATPase subunit (77 aa) initn: 285 init1: 257 opt: 267 Z-score: 251.6 bits: 51.3 E(85289): 2.8e-07 Smith-Waterman score: 267; 49.3% identity (86.7% similar) in 75 aa overlap (43-117:2-76) 20 30 40 50 60 70 pF1KE2 QAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSRGSCSTE :.:::: .::.::..:. ::.::.:. :.: NP_612 MEVEQYRREREHEFQSKQQAAMGSQGNLSAE 10 20 30 80 90 100 110 pF1KE2 VEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING ::. :.... .:. ..::..:: .::..:::.::..: ::::. NP_612 VEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA 40 50 60 70 >>NP_001191007 (OMIM: 606853) V-type proton ATPase subun (78 aa) initn: 311 init1: 201 opt: 216 Z-score: 209.2 bits: 43.5 E(85289): 6.5e-05 Smith-Waterman score: 247; 43.6% identity (59.8% similar) in 117 aa overlap (1-117:1-77) 10 20 30 40 50 60 pF1KE2 MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA ::::::::::::::::::::::..::::: :::::: NP_001 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQA------------------------ 10 20 30 70 80 90 100 110 pF1KE2 AALGSRGSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING :.... .:. ..::..:: .::..:::.::..: ::::. NP_001 ----------------TRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRISA 40 50 60 70 118 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 20:17:38 2016 done: Mon Nov 7 20:17:39 2016 Total Scan time: 4.950 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]