FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6507, 210 aa
  1>>>pF1KE6507     210 - 210 aa - 210 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8048+/-0.000285; mu= 17.0145+/- 0.018
 mean_var=67.3194+/-13.312, 0's: 0 Z-trim(118.2): 13  B-trim: 0 in 0/56
 Lambda= 0.156316
 statistics sampled from 32060 (32070) to 32060 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.347), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(92320)
NP_000135 (OMIM: 229300,606829) frataxin, mitochon ( 210) 1393 322.3 3.9e-88
NP_852090 (OMIM: 229300,606829) frataxin, mitochon ( 196) 1063 247.9 9.3e-66


>>NP_000135 (OMIM: 229300,606829) frataxin, mitochondria  (210 aa)
 initn: 1393 init1: 1393 opt: 1393  Z-score: 1704.0  bits: 322.3 E(92320): 3.9e-88
Smith-Waterman score: 1393; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KE6 MWTLGRRAVAGLLASPSPAQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MWTLGRRAVAGLLASPSPAQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGV
              130       140       150       160       170       180

              190       200       210
pF1KE6 SLHELLAAELTKALKTKLDLSSLAYSGKDA
       ::::::::::::::::::::::::::::::
NP_000 SLHELLAAELTKALKTKLDLSSLAYSGKDA
              190       200       210

>>NP_852090 (OMIM: 229300,606829) frataxin, mitochondria  (196 aa)
 initn: 1063 init1: 1063 opt: 1063  Z-score: 1302.2  bits: 247.9 E(92320): 9.3e-66
Smith-Waterman score: 1063; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KE6 MWTLGRRAVAGLLASPSPAQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 MWTLGRRAVAGLLASPSPAQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 GLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGV
       ::::::::::::::::::::::::::::::::::::::::                    
NP_852 EDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSRYVVDLSVMTGLGKTGCTPT
              130       140       150       160       170       180

              190       200       210
pF1KE6 SLHELLAAELTKALKTKLDLSSLAYSGKDA
                                     
NP_852 TACPSMSCWPQSSLKP              
              190                    




210 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:42:59 2019 done: Thu Oct 24 21:43:00 2019
 Total Scan time:  3.270 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]