GENSCAN 1.0 Date run: 6-Nov-116 Time: 05:51:00 Sequence gi568815589r:21207098_21328173 : 121076 bp : 37.47% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.06 PlyA - 371 366 6 1.05 1.05 Term - 2578 2255 324 1 0 56 55 282 0.616 15.48 1.04 Intr - 4069 3930 140 2 2 71 72 84 0.753 4.36 1.03 Intr - 4391 4253 139 2 1 43 31 106 0.650 -0.48 1.02 Intr - 4829 4785 45 2 0 92 80 55 0.506 2.79 1.01 Init - 10208 9783 426 2 0 59 40 313 0.575 18.85 1.00 Prom - 10464 10425 40 -9.55 2.00 Prom + 10735 10774 40 -4.85 2.01 Sngl + 14024 16066 2043 1 0 42 47 297 0.375 14.94 2.02 PlyA + 16275 16280 6 1.05 3.02 PlyA - 18345 18340 6 1.05 3.01 Sngl - 21076 20507 570 1 0 59 48 244 0.655 12.31 3.00 Prom - 22783 22744 40 -6.75 4.06 PlyA - 23232 23227 6 1.05 4.05 Term - 24655 24416 240 1 0 51 37 261 0.762 12.34 4.04 Intr - 26132 25993 140 0 2 77 72 97 0.619 6.26 4.03 Intr - 26890 26776 115 1 1 95 69 62 0.501 4.10 4.02 Intr - 32746 32344 403 0 1 62 -10 306 0.001 11.70 4.01 Init - 44395 44049 347 1 2 71 68 163 0.410 9.33 4.00 Prom - 62949 62910 40 -4.75 5.05 PlyA - 63750 63745 6 1.05 5.04 Term - 68363 67786 578 0 2 5 42 231 0.169 3.84 5.03 Intr - 71330 71159 172 2 1 63 -14 216 0.048 7.49 5.02 Intr - 74549 74459 91 1 1 49 106 15 0.032 -1.52 5.01 Init - 92432 90829 1604 2 2 42 53 408 0.150 24.60 5.00 Prom - 95441 95402 40 -4.35 6.05 PlyA - 95941 95936 6 1.05 6.04 Term - 98248 97590 659 2 2 30 48 466 0.501 29.92 6.03 Intr - 102931 102756 176 0 2 34 2 179 0.091 2.56 6.02 Intr - 110982 110910 73 1 1 77 83 52 0.388 1.15 6.01 Intr - 117224 117114 111 0 0 87 -10 115 0.066 1.03 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ NO EXONS FOUND AT GIVEN PROBABILITY CUTOFF Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815589r:21207098_21328173|GENSCAN_predicted_peptide_1|357_aa MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE ACVTQEVGVEEIALMNEDSILATQGSRDKTAAVAVAERRGDNQELRGEQCGHSSVRQLLC FGDLEQPLFLTDFPEPGDSKGKSWLLQYAGGPIQTIVTSHFSVPEDINSEGYETVKMGTC PSPWELCSREEHLGTSGPNVQNLHFLVSQGQKRLQVPPGDVDGSQLQKAQALSVLHEMLQ QIFSLFPTERSSAAWNMTLLDQLHTGFHQQLECLESCLGQATGEEESVGVFGALHWP >gi568815589r:21207098_21328173|GENSCAN_predicted_CDS_1|1074_bp atggccctgtccttttctttactgatggccgtgctggtgctcagctacaaatccatctgt tctctgggctgtgatctgcctcagactcacagcctgggtaataggagggccttgatactc ctggcacaaatgggaagaatctctcatttctcctgcctgaaggacagatatgatttcgga ttcccccaggaggtgtttgatggcaaccagttccagaaggctcaagccatctctgccttc catgagatgatccagcagaccttcaatctcttcagcacaaaggattcatctgctgcttgg gatgagaccctcctagacaaattctacattgaacttttccagcaactgaatgacctagaa gcctgtgtgacacaggaggttggggtggaagagattgccctgatgaatgaggactccatc ctggctacccaaggcagcagggataaaactgctgctgtggcagtggcagagaggagaggt gacaaccaggaactgcgtggagaacagtgtggccactcttctgtgaggcagttgctctgt tttggggatctggagcagccgctattccttacagacttcccagagcctggagacagcaag ggcaagagctggctgctgcaatatgctgggggtccaatccagaccatagtcacctcacat ttttcagtacctgaagatatcaacagtgaaggctatgaaacagtgaagatggggacctgc ccctccccctgggagctctgttccagagaggaacaccttggcacttctgggccaaatgtg cagaatctccactttcttgtgtctcaaggacagaagagacttcaggttccccctggagat gtggatggcagccagttgcagaaggcccaggccctgtctgtcctccatgagatgcttcag cagatcttcagcctcttccccacagagcgctcctctgctgcctggaacatgaccctcctg gaccagctccacactggatttcatcagcagctcgaatgcctggagtcttgcttagggcag gcaacaggagaggaagaatctgtgggggtgtttggggccctacactggccttga >gi568815589r:21207098_21328173|GENSCAN_predicted_peptide_2|680_aa MIISIIAEKAFDKIQQPFMLKTLNKLGIDGTYLKIIRAIYDKPTANVILNGQKLEAFSLK TGTRQGYPLSPLLFNIVLEDLASAIRQKEIKCIQLEKEEIKLSLFADDMIVYLENSIFSA PNLLKLISNFSKVSGYKINVQKSQALLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTR DMKELFKENYKPLLNEIKEDTNKWKNIPCSWVGRINTVKMAIRPKVIYRFSAIPIKLPMT FFTELEKTSLKFIWNQKRARTTKSILSQKNKAGGITLPDFKLYYKPTVTKTAWYWYQNRD IDQWNRTEPSEITLHIYMYLIFDKPEKNKQWGKDSLFHKWCWENWLAICRKLKLDPFLTP YTKINSRWIKDLNVRPKTIRTLEENLGITIQDIGMGKDFMSKTPKAMATKAKIDKWDLIK LKSFCTAKETTIRVNRQPTKWEKIFTTYLSDKGLISRIYNELKQIYKKKTNNPIKKWAKD MNRHFSKEDIYAAKRHMKKCSSSLAIREMQIKTTMRYHLTPVRIAIIKKSGNNRCWRGCG EIGTLLHCWWECKLVQPLWKSVWRFLRDLELEIPFDPAIPLQGIYPKDYKSCCYKDTCTR MFIEALFIIAKAWNQHKCPTMIDWIKKMWHIYTMEYYAAIKKDEFMSFVGTWMKLEIIIL SKLWQGQKTKHRMFSLIDGN >gi568815589r:21207098_21328173|GENSCAN_predicted_CDS_2|2043_bp atgattatctcaataattgcagaaaaggcctttgacaaaattcaacaacccttcatgcta aaaactctcaataaattaggtattgatgggacgtatctcaaaataataagagctatctat gacaaacccacagccaatgtcatactgaatgggcaaaaactggaagcattctctttgaaa actggcacaagacagggataccctctctcaccactcctattcaacatagtgttggaagat ctggccagtgcaattaggcagaaggaaataaagtgtattcaactagaaaaagaggaaatc aaattgtccctgtttgcagatgacatgattgtatatctagaaaactccattttctcagcc ccaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgta caaaaatcacaagcactcttatacaccaataacagacaaacagagagccaaatcatgagt gaactgccattcacaattgcttcaaagagaataaaatacttaggaatccaactgacaagg gatatgaaggaactcttcaaggagaactacaaaccactgctcaatgaaataaaagaggat acaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatactgtgaaaatg gccatacggcccaaggtaatttatagattcagtgccatccccatcaagctaccaatgact ttcttcacagaattggaaaaaactagtttaaagttcatatggaaccaaaaaagagcccgc accaccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttc aaactatactacaagcctacagtaaccaaaacagcatggtactggtaccaaaacagagat atagatcaatggaacagaacagagccctcagaaataacgctgcatatctacatgtatctg atctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttcataaatgg tgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacacct tatacaaaaattaattcaagatggattaaagacttaaacgttagacctaaaaccataaga accctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttcatg tctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaa ctaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacaaaa tgggagaaaattttcacaacctacttatctgacaaagggctaatatccagaatctacaat gaactcaaacaaatttacaagaaaaaaaccaacaaccccatcaaaaagtgggcaaaggat atgaacagacacttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaatgc tcatcatcactggccatcagagaaatgcaaatcaaaaccaccatgagataccatctcaca ccagttagaatagcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtgga gaaataggaacacttttacactgttggtgggagtgtaaactagttcaaccattgtggaag tcagtgtggcgattccttagggatctagaactagaaataccatttgacccagccatccca ttacagggtatatacccaaaggactataaatcctgctgctataaagacacatgcacacgt atgtttattgaggcactattcataatagcaaaggcttggaaccaacacaaatgtccaaca atgatagactggattaagaagatgtggcacatatacaccatggaatactatgcagccata aaaaaggatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctc agtaaactatggcagggacaaaaaaccaaacaccgcatgttctcactcatagatgggaat tga >gi568815589r:21207098_21328173|GENSCAN_predicted_peptide_3|189_aa MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN LQKILRRKD >gi568815589r:21207098_21328173|GENSCAN_predicted_CDS_3|570_bp atggccctgtccttttctttactgatggccgtgctggtgctcagctacaaatccatctgt tctctaggctgtgatctgcctcagacccacagcctgggtaataggagggccttgatactc ctggcacaaatgggaagaatctctcctttctcctgcctgaaggacagacatgactttgga cttccccaggaggagtttgatggcaaccagttccagaagactcaagccatctctgtcctc catgagatgatccagcagaccttcaatctcttcagcacagaggactcatctgctgcttgg gaacagagcctcctagaaaaattttccactgaactttaccagcaactgaataacctggaa gcatgtgtgatacaggaggttgggatggaagagactcccctgatgaatgaggactccatc ctggctgtgaggaaatacttccaaagaatcactctttatctaacagagaagaaatacagc ccttgtgcctgggaggttgtcagagcagaaatcatgagatctctctctttttcaacaaac ttgcaaaaaatattaaggaggaaggattga >gi568815589r:21207098_21328173|GENSCAN_predicted_peptide_4|414_aa MEALSQLFRIFKSEGEKIEVDAESIQCSRGDMANTVPCMGDTDTTAACRVLEGTGLLQCQ LQTPVSSLVPIKFSHYRQTYLWGQCNSRHLLNSSHNAASLKAVKNETMPEQKGHSSLNNR RTLMLMAQMRRISPFSCLKDRHDFEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKN SSAAWDETLLEKFYIELFQQMNDLEACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLM EKKYSPCAWETQGSRDKTAAVAVAEVGWLWEPLPRETPGNYQWICSAMGLLQYAGGPIQT IVTSHFSVPEDINSEGYETVKMRACPSPWELCSREEHLGSSGPNAENLHFLVSQGQKRLQ VPPGDVDGSQLQKAQALSVLHEMLQQIFSVYPTECSSAAWNMTLLDQLHTGFHL >gi568815589r:21207098_21328173|GENSCAN_predicted_CDS_4|1245_bp atggaagcactgagtcaactgttcagaatattcaaatcagagggagagaagattgaagtg gatgctgagagcatacagtgctcccgtggagacatggccaacactgtcccctgcatgggt gacactgatactacagcagcctgtagagtattggaagggacagggttacttcagtgtcag ctgcaaactcctgtttcctccctagtacccatcaagttctcacactacaggcaaacttat ttatggggccaatgcaattcaaggcatctcttaaattctagtcataatgcagcctcctta aaggcagtaaaaaatgaaacaatgcctgaacagaagggacacagcagcctgaataacagg aggactttgatgctcatggcacaaatgaggagaatctctcctttctcctgcctgaaggac agacatgactttgaatttccccaggaggaatttgatggcaaccagttccagaaagctcaa gccatctctgtcctccatgagatgatgcagcagaccttcaatctcttcagcacaaagaac tcatctgctgcttgggatgagaccctcctagaaaaattctacattgaacttttccagcaa atgaatgacctggaagcctgtgtgatacaggaggttggggtggaagagactcccctgatg aatgaggactccatcctggctgtgaagaaatacttccaaagaatcactctttatctgatg gagaagaaatacagcccttgtgcctgggagacccaaggcagcagggataaaactgctgct gtggcagtggcagaggtaggatggctgtgggagcctctccccagggaaactccaggcaac taccagtggatatgctcagctatggggctgctgcaatatgctgggggtccaatccagacc atagtcacttcacatttttcagtacctgaagatatcaacagtgaaggctatgaaacagtg aagatgagggcctgcccctccccctgggagctctgttccagagaggaacaccttggctct tctgggccaaatgcagagaatctccactttcttgtgtctcaaggacagaagagacttcag gttccccctggagatgtggatggcagccagttgcagaaggcccaggccctgtctgtcctc catgagatgcttcagcagatcttcagcgtctaccccacagagtgctcctctgctgcctgg aacatgaccctcctggaccagctccacactggatttcatctgtag >gi568815589r:21207098_21328173|GENSCAN_predicted_peptide_5|814_aa MIISIDAEKAFDQIQQCFMLKTLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLK TGARQGCPLSLLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVS AKNLLKLISNFSKVSGYKLNVQKSQAFLYTNNRQTESQVMSELPFTIASKRIKYLGIQLT RDMKDLFKENYKPLLNEIKEDTNKWKNIPCSWLRRINIVKMAILPKVIYRFNAIPIKLPM TFFTELEKTTLKFIWNQKRARTAKSILSQKNKAGGITLPDFKLYYKPTVTKTAWYWYQNR DIDQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSLFHKWCWENWLAICRKLKLDPFLI PYTKINSRWIKDLNVSPKTIKTLEENLGNTIQDIGMGKDFMSKTPKAMATKAKIDKWDLI KLKSFCTAKETTIRVNRQPTEWEKIFATYSFDKGLISRIYNELKQIYKRKSNNPIKKWAK DMNRHFSKEDIYAAKKHVKKCSSSLAIREMQIKTTMRYHLTLVRMAIIKKSGINSFGICC KSPKLSLPYRNTKCQHNVFVYQFLKVFHGNHFQKVQAIFLFHEMMQQTFNLFSTKDSSDT WDATLLDKFYTELYQQLNDLEAYQKEKEDKEGLYIMLKGSMQQEELTILTIYAPNTGAPR FIKQVLRDLQRGLDSHTIIVGEFNTPLSILDRSTRQKINKDIQDLNSALDQADLIDICRT FHPKLTEYTFFSASRHTYSKIDHIIGNKTLLSKRKRMEIKTNSLSDHNAIKLELGIKKLT QNPTTTWKLNNLLLNGYWINNEIKAEVHKFFETN >gi568815589r:21207098_21328173|GENSCAN_predicted_CDS_5|2445_bp atgattatctcaatagatgcagaaaaggcctttgaccaaattcaacaatgcttcatgcta aaaactctcaataaattaggtattgatgggacgtatctcaaaataataagagctatctat gacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaa actggtgcaagacagggctgccctctctcactactcctattcaacatagtgttggaagtt ctggccagggcaatcaggcaggagaaggaaataaagggtattcaattaggaaaagaggaa gtcaaattgtccctgtttgcagatgacatgattgtatatctagaaaaccccattgtctca gccaaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaactcaat gtacaaaaatcacaagcattcttatacaccaataacagacaaacagagagccaagtcatg agtgaactgccattcacaattgcttcaaagagaataaaatacctaggaatccaacttaca agggatatgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagag gatacaaacaaatggaagaacattccatgctcatggttaagaagaatcaatatcgtgaaa atggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatg actttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcc cgcaccgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacctgac ttcaaactatactacaagcctacagtaaccaaaacagcatggtactggtaccaaaacaga gacatagaccaatggaacagaacagagccctcagaaataatgccgcatatctacaactat ctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttcataaa tggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttata ccttatacaaaaattaattcaagatggattaaagacttaaatgttagtcctaaaaccata aaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttc atgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaatt aaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctaca gaatgggagaaaattttcgcaacctactcatttgacaaagggctaatatccagaatctac aatgaactcaaacaaatttacaagagaaaatcaaacaaccccatcaaaaagtgggcgaag gatatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacgtgaaaaaa tgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctc acacttgttagaatggcgatcattaaaaagtcaggaataaacagttttggcatctgttgc aagagtcctaaattaagtcttccttaccgtaataccaagtgtcagcataatgtttttgtt taccagttcctcaaagtgtttcatggcaaccacttccagaaggttcaagctatcttcctt ttccatgagatgatgcagcagaccttcaacctcttcagcacaaaggactcatctgatact tgggatgcgacccttttagacaaattctacactgaactttaccagcagctgaatgacctg gaagcctatcaaaaagaaaaagaagacaaagaagggctttacataatgttaaagggatca atgcaacaagaagagctaactattctaactatatatgcacccaatactggagcacccaga ttcataaagcaagttcttagagacctacaaagaggtttagactcccacacaataatagtg ggagaatttaacaccccactgtcaatattagacagatcaacaagacagaaaattaacaag gatattcaggacttgaactcagctctggaccaagcagacctaatagacatctgcagaact ttccaccccaaattaacagaatacacattcttctcagcatcacgtcacacttattctaaa attgaccacataattggaaataaaacactcctcagtaaacgcaaaagaatggaaatcaaa acaaacagtctctcagaccacaatgcaatcaagttagaactcgggattaagaaactcact caaaaccccacaactacatggaaactgaacaacctgctcctgaatggctactggataaat aatgaaattaaggcagaagtacataagttctttgaaaccaattag >gi568815589r:21207098_21328173|GENSCAN_predicted_peptide_6|339_aa XQASCHVVSTYHIAPWRCPCDCDEELRLPVSGRVSDPYWESVQPANVGVELQGKSRKISW LRKLAINIRALCTHLIPEDTDPGQEEITIEKPNPSHKHSKGKGKDLGALIILAQRKRPFP NLCTKQGLQRRAQGSGSLNLNSPEASATSPMALPFVLLMALVVLNCKSICSLGCDLPQTH SLSNRRTLMIMAQMGRISPFSCLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNL FSTKDSSATWDETLLDKFYTELYQQLNDLEACMMQEVGVEDTPLMNVDSILTVRKYFQRI TLYLTEKKYSPCAWEVVRAEIMRSFSLSANLQERLRRKE >gi568815589r:21207098_21328173|GENSCAN_predicted_CDS_6|1020_bp ntacaagccagctgccatgttgtgagcacataccacatagctccatggagatgcccatgt gactgtgatgaagagctaagacttcctgtcagtggccgtgtgagtgacccatactgggaa tcagtacaacctgccaatgtaggtgtagaactacaagggaaatcaagaaaaatctcctgg ttaaggaaacttgctatcaacatccgagcactgtgcacacatttgatccctgaggacaca gaccctggacaggaggagatcaccattgagaagccaaatccttcacacaaacactctaag ggcaagggcaaagatcttggagcattaattattttggctcaaagaaaaagacctttccct aatctgtgcacaaaacaaggtcttcagagaagagcccaaggttcagggtcactcaatctc aacagcccagaagcatctgcaacctccccaatggccttgccctttgttttactgatggcc ctggtggtgctcaactgcaagtcaatctgttctctgggctgtgatctgcctcagacccac agcctgagtaacaggaggactttgatgataatggcacaaatgggaagaatctctcctttc tcctgcctgaaggacagacatgactttggatttcctcaggaggagtttgatggcaaccag ttccagaaggctcaagccatctctgtcctccatgagatgatccagcagaccttcaatctc ttcagcacaaaggactcatctgctacttgggatgagacacttctagacaaattctacact gaactttaccagcagctgaatgacctggaagcctgtatgatgcaggaggttggagtggaa gacactcctctgatgaatgtggactctatcctgactgtgagaaaatactttcaaagaatc accctctatctgacagagaagaaatacagcccttgtgcatgggaggttgtcagagcagaa atcatgagatccttctctttatcagcaaacttgcaagaaagattaaggaggaaggaatga