GENSCAN 1.0	Date run:  6-Nov-116	Time: 15:54:03

Sequence gi568815590r:123403376_123641014 : 237639 bp : 44.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3744   3868  125  2  2   48   37   116 0.801   2.14
 1.02 Term +   7816   8008  193  1  1   81   43   135 0.695   5.19
 1.03 PlyA +   8213   8218    6                              -0.45

 2.00 Prom +   8274   8313   40                              -5.36
 2.01 Init +  13475  13557   83  1  2   86   81   135 0.997  13.06
 2.02 Intr +  24549  24648  100  0  1   60  115    59 0.854   5.91
 2.03 Intr +  33078  33226  149  2  2   71   78    28 0.218  -0.87
 2.04 Intr +  33835  33959  125  1  2  102   83    21 0.299   3.23
 2.05 Intr +  44163  44217   55  1  1   78  100    -7 0.153  -2.46
 2.06 Intr +  45343  45548  206  1  2   55  101    96 0.157   6.44
 2.07 Intr +  51231  51440  210  1  0   28  107   106 0.606   5.38
 2.08 Intr +  81416  81507   92  0  2   69   90    73 0.892   5.31
 2.09 Term +  81654  81740   87  2  0  135   46    36 0.617   1.76
 2.10 PlyA +  82586  82591    6                               1.05

 3.10 PlyA -  84674  84669    6                               1.05
 3.09 Term - 100087  99998   90  1  0   95   41    45 0.673  -1.78
 3.08 Intr - 101372 101229  144  2  0   70   95    72 0.936   6.58
 3.07 Intr - 103199 103017  183  2  0  128   76   268 0.999  29.58
 3.06 Intr - 110007 109823  185  1  2   57   98   129 0.813  10.31
 3.05 Intr - 110958 110865   94  0  1   79  105    92 0.801   9.54
 3.04 Intr - 128615 128523   93  2  0   86  114    98 0.998  12.36
 3.03 Intr - 129865 129816   50  2  2   97   83    36 0.996   2.40
 3.02 Intr - 131439 131327  113  2  2   82   58   120 0.995   8.42
 3.01 Init - 137639 137524  116  2  2   74   94   214 0.796  20.28
 3.00 Prom - 137867 137828   40                              -4.86

 4.00 Prom + 139813 139852   40                              -4.16
 4.01 Sngl + 159795 159998  204  2  0   74   38   199 0.538   8.69
 4.02 PlyA + 161152 161157    6                               1.05

 5.00 Prom + 162052 162091   40                               1.64
 5.01 Sngl + 178859 179320  462  1  0   73   43   177 0.894   7.86
 5.02 PlyA + 180436 180441    6                               1.05

 6.07 PlyA - 181595 181590    6                               1.05
 6.06 Term - 184998 184864  135  0  0   84   47   108 0.403   4.32
 6.05 Intr - 216834 216778   57  0  0   98   94    60 0.329   6.68
 6.04 Intr - 220838 220681  158  0  2   31   43    59 0.140  -4.57
 6.03 Intr - 221252 221116  137  1  2   66   98    52 0.499   4.21
 6.02 Intr - 230789 230662  128  2  2  126   50    10 0.264   0.48
 6.01 Init - 230912 230850   63  2  0   52  102    24 0.281   1.56

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  60343  60260   84  1  0  136   47    43 0.840   2.65
S.002 Init - 153827 153808   20  2  2   84  119     7 0.823   2.94


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:123403376_123641014|GENSCAN_predicted_peptide_1|105_aa
MPRFASNHCKPGEKHGTDSSSKSPERINLADALISDFQTLELIKAAKLQIILQMQPQMQS
MTKIYRGPLDWPASPCSDVNDIEGTPPQEISTAQPLLRPNSARSS

>gi568815590r:123403376_123641014|GENSCAN_predicted_CDS_1|318_bp
atgccaaggtttgccagcaaccactgcaagccaggagagaagcatggaacagattcttcc
tccaaatctccagaaagaatcaacctggctgacgctttgatttcagacttccagactctt
gaactaatcaaagctgcaaaactacaaatcattcttcaaatgcagccccagatgcagtct
atgactaagatctaccgcggacccctggactggcctgctagcccatgctccgatgttaat
gacatcgaaggcacccctccccaggaaatttcaactgcacaacccctactacgccccaat
tcagcaagaagcagttag

>gi568815590r:123403376_123641014|GENSCAN_predicted_peptide_2|368_aa
MEGNGPAAVHYQPASPPRDACVYSSCYCEENIWKLCEYIKNHDQYPLEECYAVFISNERK
MDYHVVLLHVSSGGQNFIYDLDTVLPFPCLFDTYVEDAFKSDDDIHPQFRRKFRVIRADS
YLKNFASDRSHMKDSSGNWREPPPPYPCIETGDEETDAERGFHIAHQVTSQMFTNPEHRR
LSSPVVLHEVQEPCGKEAKWSVFSFRVQTFIGLSRGLEVLKDVFARGEKNMNRSLRENQC
VAVGDALTSSLGAQTCELWQYCHWFRASTTSYGTEPQCHQVVSASGYCSSVSNGPFILPS
RRSPTPGDHGHKCEVVSYSSNRKRMQGDSQPLRIKQQQGEARPSQKLQARNPQMQFSRST
SQATKKTK

>gi568815590r:123403376_123641014|GENSCAN_predicted_CDS_2|1107_bp
atggaaggtaatggccccgctgctgtccactaccagccggccagccccccgcgggacgcc
tgcgtctacagcagctgctactgtgaagaaaatatttggaagctctgtgaatacatcaaa
aaccatgaccagtatcctttagaagaatgttatgctgtcttcatatctaatgagaggaag
atggattaccatgttgttttgcttcatgtttcaagtggaggacagaacttcatttatgat
ctcgatactgtcttgccatttccctgcctctttgacacttatgtagaagatgcctttaag
tctgatgatgacattcacccacagtttaggaggaaatttagagtgatccgtgcagattca
tatttgaagaactttgcttctgaccgatctcacatgaaagactccagtgggaattggaga
gagcctccgccgccatatccctgcattgagactggagatgaggaaactgatgcagagaga
ggttttcatatagctcaccaagtcactagccaaatgttcacaaaccctgaacacagacgt
ctatccagtcctgttgttttgcatgaggttcaggagccttgtgggaaagaagccaaatgg
tctgtgttctcatttagggttcagacgtttataggcttgtcccgtgggctagaggtcctc
aaagatgtctttgctagaggagagaaaaacatgaacaggtccctgagagaaaatcaatgt
gtagcagtcggagatgcactcacttctagccttggtgcccagacctgtgaactctggcag
tactgtcactggttcagagcatctactacatcttatgggacagaaccccagtgtcaccag
gtggtgtctgccagcggatactgtagctcagtctccaatgggccattcattctaccatca
agaagatcacctacccctggggaccacggccacaaatgtgaggtagtttcttatagcagc
aataggaagcggatgcagggggattcacagcccttacgcataaagcagcagcaaggggag
gccaggcctagccagaagctacaggcaaggaacccacagatgcagttcagcaggtccacc
tcccaggccacaaagaagacaaagtag

>gi568815590r:123403376_123641014|GENSCAN_predicted_peptide_3|355_aa
MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL
SDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
VRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF

>gi568815590r:123403376_123641014|GENSCAN_predicted_CDS_3|1068_bp
atgccattcctcgggcaggactggcggtcccccgggcagaactgggtgaagacggccgac
ggctggaagcgcttcctggatgagaagagcggcagtttcgtgagcgacctcagcagttac
tgcaacaaggaggtatacaataaggagaatcttttcaacagcctgaactatgatgttgca
gccaagaagagaaagaaggacatgctgaatagcaaaaccaaaactcagtatttccaccaa
gaaaaatggatctatgttcacaaaggaagtactaaagagcgccatggatattgcaccctg
ggggaagctttcaacagactggacttctcaactgccattctggattccagaagatttaac
tacgtggtccggctgttggagctgatagcaaagtcacagctcacatccctgagtggcatc
gcccaaaagaacttcatgaatattttggaaaaagtggtactgaaagtccttgaagaccag
caaaacattagactaataagggaactactccagaccctctacacatccttatgtacactg
gtccaaagagtcggcaagtctgtgctggtcgggaacattaacatgtgggtgtatcggatg
gagacgattctccactggcagcagcagctgaacaacattcagatcaccaggcctgccttc
aaaggcctcaccttcactgacctgcctttgtgcctacaactgaacatcatgcagaggctg
agcgacgggcgggacctggtcagcctgggccaggctgcccccgacctgcacgtgctcagc
gaagaccggctgctgtggaagaaactctgccagtaccacttctccgagcggcagatccgc
aaacgattaattctgtcagacaaagggcagctggattggaagaagatgtatttcaaactt
gtccgatgttacccaaggaaagagcagtatggagatacccttcagctctgcaaacactgt
cacatcctttcctggaagggcactgaccatccgtgcactgccaataacccagagagctgc
tccgtttcactttcaccccaggactttatcaacttgttcaagttctga

>gi568815590r:123403376_123641014|GENSCAN_predicted_peptide_4|67_aa
MAAQTMPKIVPEKSLVRMLLASPLNRGHYRVYHCCHHGPWISDIVATAAGLTRMPLPLAL
LRCIISF

>gi568815590r:123403376_123641014|GENSCAN_predicted_CDS_4|204_bp
atggcagcccagactatgcccaaaatcgtacctgagaagagtctagtgaggatgctgctg
gcatccccgctgaacagaggacactaccgagtgtaccactgctgccatcatggtccctgg
atatcagacattgttgctactgctgctggcctcaccagaatgcctcttccattggccctt
cttcgttgcatcatcagcttctga

>gi568815590r:123403376_123641014|GENSCAN_predicted_peptide_5|153_aa
MKTIPSGIVSIARYLKSFSEHVDHWQKLDPFLTPYTKIGSRWIEDLNVKPQTIKTLEENL
GNTIQYIGIGKDFMTKTAKTIATKAKIDKWDLIKLKSFCTAIETIIRVNRQPTEWEKTFV
SYPSDKGLISRIYKELKPIYKKKTTPSKSGQRI

>gi568815590r:123403376_123641014|GENSCAN_predicted_CDS_5|462_bp
atgaagactataccttcagggatcgtttctatagctcgttacttgaaaagtttctctgaa
catgtagatcactggcagaaactggaccccttccttacaccttatacaaaaattggctca
agatggattgaagacttgaatgtaaaaccccaaaccataaaaactctagaagaaaaccta
ggcaataccattcagtacataggcataggcaaagacttcatgactaaaacagcaaaaaca
attgcaacaaaagcaaaaattgacaaatgggatctaatcaaactaaagagcttctgcaca
gcaatagaaactatcatcagagtgaacaggcaacctacagaatgggagaaaacttttgta
agctacccatctgacaaaggtctaatatccagaatctacaaggaacttaaaccaatttac
aagaaaaaaacaaccccatcaaaaagtgggcaaaggatatga

>gi568815590r:123403376_123641014|GENSCAN_predicted_peptide_6|225_aa
MKMSKFLLPCASSFTTQLLHKGSLGKNVPRPHISVSITEGMGTCPCPQLLTRGDDETTPY
STPLWTDWTWTDGSRGQQLTQPGYSRKSSKMATIDSFAPSMYMLLLISKGSESFSSSSAA
PVQKPQLMLHGAEMRYPAKSRPDFWPINHEIKYNFFKPPSSGGLENVSGVFAEMGNWSRK
EKSKPVIFGDAFHSWETGSHPQTKDRIAQFAQHNHQVPAVNAPDF

>gi568815590r:123403376_123641014|GENSCAN_predicted_CDS_6|678_bp
atgaagatgtccaagtttttgctaccttgtgccagctccttcaccactcaactgcttcac
aagggatccttgggaaagaatgtaccaaggcctcatatctctgtgtccatcacagagggt
atgggcacttgtccttgtccccagctcctcactagaggtgatgatgagaccacaccatac
tcaactcctttatggaccgactggacatggactgatggatccaggggtcaacagctgacc
caaccagggtatagcagaaagtcttcaaagatggccaccatcgattcctttgctccttct
atgtatatgttacttctcatatcaaaaggaagtgaatccttcagctctagttcagcagcc
ccagttcagaagccccagctgatgctgcatggagcagagatgagatacccagccaagtcc
cgcccagacttctggcccatcaatcatgaaatcaaatacaatttttttaagccaccaagt
tctgggggcctggaaaatgtttctggcgtctttgcagaaatgggaaactggagcaggaag
gagaagtcaaagcccgtgatattcggggatgccttccactcgtgggaaacaggttcccat
ccacaaaccaaagacagaatagcacaatttgcacaacacaaccaccaagtcccagcggtc
aatgctccagacttttga