GENSCAN 1.0	Date run:  8-Nov-116	Time: 00:55:38

Sequence gi568815590r:116545009_116855797 : 310789 bp : 39.71% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +    774    813   40                              -3.85
 1.01 Init +   1769   1946  178  1  1   37   43   118 0.398   1.67
 1.02 Intr +   3736   3939  204  2  0   44   97    59 0.487   0.65
 1.03 Term +   4426   4529  104  2  2   68   43    98 0.777   0.76
 1.04 PlyA +   4531   4536    6                               1.05

 2.03 PlyA -   5301   5296    6                               1.05
 2.02 Term -  25230  25028  203  1  2  106   48   159 0.832  10.27
 2.01 Init -  53651  53510  142  2  1   76   85   116 0.850  10.69
 2.00 Prom -  61369  61330   40                              -4.65

 3.05 PlyA -  61403  61398    6                               1.05
 3.04 Term -  63559  63402  158  2  2   60   48   162 0.670   6.51
 3.03 Intr -  65589  65413  177  1  0   46   13   130 0.196   0.27
 3.02 Intr -  66078  66033   46  0  1   98   68    19 0.593  -2.04
 3.01 Init -  67031  66930  102  2  0   56  105    90 0.876   7.79
 3.00 Prom -  69160  69121   40                              -8.15

 4.19 PlyA -  69334  69329    6                               1.05
 4.18 Term -  71329  71059  271  0  1   52   53   208 0.172   7.67
 4.17 Intr -  79168  79084   85  2  1   22  103   110 0.069   3.86
 4.16 Intr -  81797  81556  242  1  2  114   18   180 0.484   9.87
 4.15 Intr -  83628  83580   49  1  1   42  105    66 0.856   0.52
 4.14 Intr -  86509  86312  198  2  0   24   55   201 0.553   8.80
 4.13 Intr -  89570  89434  137  1  2   60   52    73 0.611   0.19
 4.12 Intr -  91839  91667  173  0  2    8   87   142 0.143   3.92
 4.11 Intr -  96321  96118  204  0  0   89   52   133 0.344   8.27
 4.10 Intr -  99635  99478  158  0  2   60   77    50 0.866  -0.09
 4.09 Intr - 101595 101463  133  0  1   55   72   159 0.979  10.30
 4.08 Intr - 103918 103798  121  0  1   50   77    91 0.965   3.78
 4.07 Intr - 110997 110848  150  2  0   63  111   119 0.883  10.06
 4.06 Intr - 112306 112207  100  2  1   16   94    59 0.670  -2.45
 4.05 Intr - 113972 113805  168  0  0   49   49   150 0.005   6.20
 4.04 Intr - 181164 181008  157  0  1   96  116   177 0.961  19.96
 4.03 Intr - 182270 182138  133  1  1   71   23    88 0.533   0.33
 4.02 Intr - 193681 193605   77  1  2   57   86    77 0.268   1.79
 4.01 Init - 210789 210658  132  0  0  102   70   147 0.592  14.81
 4.00 Prom - 212012 211973   40                              -6.65

 5.00 Prom + 215422 215461   40                              -6.45
 5.01 Init + 221596 221783  188  0  2   79   86   257 0.093  23.18
 5.02 Intr + 225184 225358  175  1  1   87   59    76 0.514   3.62
 5.03 Term + 226448 226834  387  1  0   97   41   225 0.603  12.65
 5.04 PlyA + 226901 226906    6                               1.05

 6.06 PlyA - 227479 227474    6                               1.05
 6.05 Term - 247163 246972  192  2  0  119   49   121 0.510   7.74
 6.04 Intr - 251664 251522  143  1  2   41   62   107 0.011   2.55
 6.03 Intr - 261738 261550  189  1  0   66   44   120 0.479   4.04
 6.02 Intr - 269138 269024  115  2  1   35   75   103 0.911   2.80
 6.01 Init - 269985 269911   75  0  0   54   95   128 0.991  11.24
 6.00 Prom - 280791 280752   40                              -2.95

 7.00 Prom + 285911 285950   40                              -5.95
 7.01 Init + 292672 292732   61  0  1   53   54   104 0.659   4.96
 7.02 Term + 293718 293989  272  1  2   89   47   177 0.949   8.36
 7.03 PlyA + 294047 294052    6                               1.05

 8.07 PlyA - 297697 297692    6                               1.05
 8.06 Term - 302683 302492  192  1  0   76   49   256 0.773  16.94
 8.05 Intr - 304021 303938   84  1  0   52   72    76 0.721   1.50
 8.04 Intr - 305759 305610  150  2  0   32   82   210 0.713  14.24
 8.03 Intr - 307088 306940  149  0  2   49   95   177 0.985  13.53
 8.02 Intr - 307700 307541  160  2  1   88   22   195 0.982  11.54
 8.01 Intr - 309460 309237  224  2  2   74   85   185 0.809  13.72

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 169349 169290   60  2  0   66   57    89 0.809   4.90
S.002 Term - 221797 221377  421  0  1   77   49   446 0.845  33.38
S.003 Term - 283552 283433  120  1  0   81   50   158 0.930   8.79


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:116545009_116855797|GENSCAN_predicted_peptide_1|161_aa
MTGEASGNLQSWQKVKGKQGMSYMAARERDREPAKGKCSNRERQRATKGEVPHFETISSL
QSDRISGSTLKTLVMPQFNDAFFRTKKDDSHRLYFPVEDSHHWLHLYCYAYVLSINYAML
LVEIHLIKDTATGAILEAETRPSPDTKPFSTFILDFQSPQL

>gi568815590r:116545009_116855797|GENSCAN_predicted_CDS_1|486_bp
atgactggggaagcctcaggaaacttacaatcatggcagaaggtgaaggggaagcaagga
atgtcttacatggcggcaagagagagagacagagagccagcaaaggggaagtgcagcaac
agagagagacagagagcgaccaaaggggaagtgccacattttgaaaccatcagctctctg
caaagtgacagaatatctggcagtaccttaaaaaccttggtgatgccacaattcaatgat
gcatttttcagaactaaaaaggatgactcccacagattgtactttccagtggaagatagt
catcactggctgcatttatattgctatgcttacgtattaagcataaattatgctatgctg
ttggttgaaattcatctgataaaggacacagcaacaggcgctatcttggaagcggagacc
aggccttcaccagacaccaaacctttcagcacctttatcttggacttccagtctccacaa
ctgtag

>gi568815590r:116545009_116855797|GENSCAN_predicted_peptide_2|114_aa
MVHAGVPCRRPLAEAAGAALPGRASTWRKGHRCVAYTEELHRLMQGSGEGKEGEQISKWP
SFPKRSKTTPPAAQLLMSLNAAHEKHQQKLCSVLGFREKLSMWTRAFFYEKEKW

>gi568815590r:116545009_116855797|GENSCAN_predicted_CDS_2|345_bp
atggtccacgcaggtgtgccctgcaggaggccgctggcggaggcagctggtgctgctctt
ccaggtcgtgcctctacttggaggaaagggcatcgttgtgtagcttacactgaggagctc
catcggctaatgcagggctctggagaagggaaggagggagagcagatttccaaatggccc
tcgtttccaaaaaggagcaaaacgactcctcctgcagctcagttgctcatgtctctcaat
gctgcacatgaaaaacatcagcaaaaactctgctcagtgctggggtttcgagagaaacta
tcaatgtggactagagcatttttctatgagaaggaaaaatggtga

>gi568815590r:116545009_116855797|GENSCAN_predicted_peptide_3|160_aa
MKQVCPQVKERGEESQVEASYVVVQPKEGPLRLLVMKDHLGLSSERILVAIQHSPEPEIM
YAEHGHPVEMIKAFAWDWARWEEANPVTAGPAHLSPCVLFPHAGVHIASSVLDTEDSMMK
KTDMALLSWGYILLGKRDTKPAGRYTAHIIADCDEVLGRK

>gi568815590r:116545009_116855797|GENSCAN_predicted_CDS_3|483_bp
atgaaacaagtttgcccacaggtgaaggagagaggggaggaaagtcaggtagaagcatcc
tacgtagttgtgcagcctaaggaaggcccattacggctgctggtaatgaaggatcacctt
ggcctgtcttcagaaagaattctggtagctatccagcattctccagaaccagaaatcatg
tacgctgagcatggccacccagtggaaatgataaaggcctttgcttgggactgggccaga
tgggaagaagcaaatcctgtaacagcaggacctgcccacctaagtccctgtgttctgttc
cctcatgctggtgttcatattgccagcagtgttctagacactgaggatagcatgatgaag
aagacagatatggccctgctgtcatggggttacattctactgggcaagagagacactaaa
ccagcaggtcgatacacagcccacatcatagcagattgtgatgaagttctgggaaggaaa
tga

>gi568815590r:116545009_116855797|GENSCAN_predicted_peptide_4|895_aa
MASRKEGTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGLGFSADPYCVCYKDDGK
PAFPGEGLLYFVSTLAGAGLADNRIDSLLGCFFTIRVAELTCGLRLHTEVAAHPVVLKII
KHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHV
NIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLT
PKLMEVCKEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADKHEL
LSLASSNHLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQS
RGEPPLPEEDLSKLFKPPQPPARMDSLLIAAPDPEALASTVNIFFLNFYTSLLPNEHPER
SPGFMYLPRNSLSPDPESLGLIPAVKPSRSCHVMSLLKSKFDFYTIEYHSAIKKNEIMTF
TTTRMDLEAIILSEAVGTQSIMNFGDSEGKRKCKFSGLNPDLTESRALRMKLNQAPVFTS
TPGDYCLVKFALVQMLLDMKCSYIQTNALCLPLVVIDFQPPYQVNILGGGREDDYDKLRT
YITPKENRNQWNPDEALEGLEVLLGGNPFFDFDEGEALIRKPDAASGRKNFGSLGAVSQE
AASVRDERHSAEEASLFPFVGGCEDDRGSLAHTDEQRHLMLHRRCQAGCSKEHRNQCEFL
IQRGMNEGNWSHRSRRAEKPAREVVATQRLAGSKTQLSGHRPKIEDWASVTWQEQEPHKP
MGPQSGLQSGLLEYLSAHPLSGFVDSPEAGKSGSRHGKWYIQEYNVPAVIHGLGEGHGSY
CLQKSAAPARSTFAEHRPPTMKSATGHWDLCHCYCRKTQGPREPAGQQQHWTDPS

>gi568815590r:116545009_116855797|GENSCAN_predicted_CDS_4|2688_bp
atggcgtcccgcaaggaaggtaccggctctactgccacctcttccagctccaccgccggc
gcagcagggaaaggcaaaggcaaaggcggctcgggagattcagccgtgaagcaagtgcag
atagatggccttggcttttcagcagatccttattgtgtctgttacaaagatgatgggaaa
cctgcttttcctggtgaaggtttattgtacttcgtttccactttggcgggagcaggttta
gctgacaaccgcattgattctctcttaggctgtttcttcaccatccgtgtggctgagctg
acctgtgggctcaggctgcacacagaagtagctgctcaccctgtggtattaaagataatc
aaacattatcaagaagaaggacaaggaactgaagttgttcaaggagtgcttttgggtctg
gttgtagaagatcggcttgaaattaccaactgctttcctttccctcagcacacagaggat
gatgctgactttgatgaagtccaatatcagatggaaatgatgcggagccttcgccatgta
aacattgatcatcttcacgtgggctggtatcagtccacatactatggctcattcgttacc
cgggcactcctggactctcagtttagttaccagcatgccattgaagaatctgtcgttctc
atttatgatcccataaaaactgcccaaggatctctctcactaaaggcatacagactgact
cctaaactgatggaagtttgtaaagaaaaggatttttcccctgaagcattgaaaaaagca
aatatcacctttgagtacatgtttgaagaagtgccgattgtaattaaaaattcacatctg
atcaatgtcctaatgtgggaacttgaaaagaagtcagctgttgcagataaacatgaattg
ctcagccttgccagcagcaatcatttggggaagaatctacagttgctgatggacagagtg
gatgaaatgagccaagatatagttaaatacaacacatacatgaggaatactagtaaacaa
cagcagcagaaacatcagtatcagcagcgtcgccagcaggagaatatgcagcgccagagc
cgaggagaacccccgctccctgaggaggacctgtccaaactcttcaaaccaccacagccg
cctgccaggatggactcgctgctcattgcagctcctgaccccgaggccctggcatctact
gtgaatattttttttttgaatttttatacttcgctgctcccaaatgagcaccccgagaga
agtccaggcttcatgtacttgcccaggaattccttgtccccggacccggaatcacttggc
ctaattccggctgttaagccctcgcgtagttgccatgtgatgagtttattaaagtcaaaa
tttgatttctacaccatagaataccactctgccataaaaaagaatgaaataatgactttt
acaacaactcggatggatctggaggccattattctaagtgaagctgtgggcacacagagt
ataatgaactttggagactcagaagggaagagaaaatgcaaattttcaggcctcaaccca
gacttaactgaatcaagagctttgaggatgaagcttaaccaagcacctgtcttcaccagc
accccaggtgactattgcttggtgaagtttgctctagtacagatgctccttgacatgaag
tgcagttacatccagacaaatgcattatgtctgccattggttgtgatagatttccaacct
ccctaccaagttaatattttaggagggggtagggaggatgattatgacaaattacggact
tacattactcctaaggaaaacagaaatcaatggaaccctgatgaagcgttagagggactc
gaggtcctgctgggagggaacccgttttttgactttgacgaaggagaggctctaatcagg
aaaccagatgctgcttcagggcgaaagaactttggcagccttggagctgtgagtcaggag
gctgcatctgtcagagacgagcggcacagtgcagaagaggcctctctctttcctttcgtg
ggtggctgtgaagatgacagaggatcacttgcacacaccgatgaacagaggcaccttatg
ctccatagaaggtgtcaggcagggtgcagcaaggaacacaggaatcagtgtgagttcttg
atacagaggggaatgaatgaagggaattggtcacataggtcacgaagggctgagaagcca
gcaagggaagttgtggccacccagaggttagcaggcagcaagacacagttgtcaggacat
cgtccgaagattgaagattgggcctcagtcacctggcaggaacaggagccacataaaccc
atgggaccacagagtggcctgcagagtggcctcctggagtatttatctgcccatccgttg
tctggatttgtggacagtcccgaagcgggaaaatcaggaagcagacatggcaaatggtac
atccaggaatacaacgtccctgctgtgatccatgggttgggagaaggccacggcagctat
tgcctccagaagagtgctgcacctgccaggtccactttcgcagaacacagaccccctacc
atgaaatcagcaactggacactgggacctctgccactgttactgcaggaaaacccagggc
ccccgtgaaccagccggtcaacagcagcattggacagacccaagttga

>gi568815590r:116545009_116855797|GENSCAN_predicted_peptide_5|249_aa
MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGETQLC
TTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVAT
QDQNLSVKVKKKPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQLVSVHEKESIKHLKE
EQGLVKNTEQSRRKKRKKISGPNPLSCLKKKKKAPDTQSSASEKKRKRKRIRNRSNPKVL
SEKQNAEGE

>gi568815590r:116545009_116855797|GENSCAN_predicted_CDS_5|750_bp
atgaagatcacaaggcagaaacatgccaagaagcatcttggcttcttccgcaacaacttc
ggagtccgcgagccgtaccagatcctgctggacggcaccttctgtcaggcggcgctgcgg
ggccgcatccagctgcgggagcagctgccccgctacctcatgggggagacgcagctgtgc
accacaagatgtgtgttaaaagagctagaaacattgggaaaggacttatatggggcaaaa
ctgattgcacaaaaatgccaagttcgaaattgtcctcatttcaagaatgcagtgagtgga
tcagaatgtctgctttccatggttgaagagggaaatcctcatcattattttgtggcaaca
caggatcagaatttgtctgtgaaagtaaaaaagaagcctggagttcctctcatgtttatt
attcagaacactatggttttggacaaaccttctcccaaaacaattgcctttgtaaaagca
gtggagtcaggtcagcttgtctcagtgcatgagaaagaaagtatcaaacatctcaaagag
gaacagggtttagtgaaaaacactgaacagagtagaagaaaaaagcgcaagaaaataagt
ggtcccaatcctcttagttgtttgaagaaaaagaaaaaggcaccggacacacaatcatct
gcttctgaaaagaaaagaaaaagaaaaagaattcggaacagatctaacccaaaagtactt
tctgagaagcagaatgcagaaggagaatga

>gi568815590r:116545009_116855797|GENSCAN_predicted_peptide_6|237_aa
MRPDIYQVPTRHEDNDVEMDELGTQWCDSGKLLSISNLYVFTGNTGIMMPYSGPESSVVT
TEGDPYGRVAEWTDLHTSIAPGQTGLKLVCSKGNIAPQDHFTGCILSHPTEKFLLNSVSV
NPKNASYAEKSFDHVQYPFMIKALNKLNIEEMYLNTLKAIYDKSKINIIFNGEKASHSEL
SLNTPQIRLSSCKGLELHVNFESTQSLVLQLVISKQVNNNRASGLLREKKAEVQGGP

>gi568815590r:116545009_116855797|GENSCAN_predicted_CDS_6|714_bp
atgagacctgatatttaccaagttccaacaagacatgaagataatgatgtggaaatggat
gaactgggcacacagtggtgtgattcaggcaagttgcttagcatctccaatctctatgtc
tttaccggtaacactgggatcatgatgccctactcaggaccagagagctctgtggtgaca
actgaaggagacccttatggcagagtggctgagtggacagatttgcacacaagcattgca
cctggacaaacaggactcaaacttgtctgctccaagggcaatattgctccacaggatcat
tttactggctgcatcctcagccatccaacagagaaattccttctcaactcagtgtctgta
aaccccaagaatgcctcttatgcagaaaaatcatttgaccacgtacaatatcctttcatg
ataaaagctctcaacaaattaaacatagaagaaatgtacctcaacacattaaaggcaatc
tatgacaagtccaaaattaatatcatattcaatggtgaaaaggcaagtcattcagaatta
tcgcttaacacccctcaaattagactctccagttgtaaaggcctagagctacatgtgaat
tttgagagcactcagtcccttgtactccaacttgtcattagtaaacaagttaataataat
cgcgccagtggattgttacgtgagaagaaggctgaagtccagggtggtccctag

>gi568815590r:116545009_116855797|GENSCAN_predicted_peptide_7|110_aa
MVKEQKSSFVGEDEEVSSGDERPYFSALCGGKQLSKLVHPLNHHPYCPFKPELCLPLSFP
NSWASFKAQYLSLRPEMFPDSPIRVPNTCCIAQSGIYKIVSIAFLFICVS

>gi568815590r:116545009_116855797|GENSCAN_predicted_CDS_7|333_bp
atggtgaaggagcagaagagctcatttgtgggtgaagatgaggaggtcagctctggagat
gaaaggccctatttttctgcactctgtggagggaaacagctcagcaagcttgttcacccc
ctgaaccatcacccatactgtccctttaaaccagaactctgcttgccactctcctttcct
aactcttgggcatccttcaaggctcagtatttgtcacttcgtccagaaatgtttcctgac
tccccaatccgagtccctaatacctgctgcatagcccaatccggcatctataaaattgtt
tcaattgcattcttattcatctgtgtctcctaa

>gi568815590r:116545009_116855797|GENSCAN_predicted_peptide_8|319_aa
XKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKETGGVEKL
FSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVPREDQQQ
QHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRKAGQIDPEPVMPPQ
QVEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEEDEDASGGDQDQE
ERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELT
QEEPYSDIIATPGPRFHII

>gi568815590r:116545009_116855797|GENSCAN_predicted_CDS_8|960_bp
nttaaagaaacaaaagccaagaggaagaggaagctaattgttgacagtgtcaaagagttg
gatagcaagacaattagagcccaacttagtgattattcagatattgttactactttggat
ctggcaccgcccaccaagaaattgatgatgtggaaagagacaggaggagtagaaaaactg
ttttctttacctgctcagcctttgtggaataacagactactgaagctctttacacgctgt
cttacaccgcttgtaccagaagaccttagaaaaaggaggaaaggaggagaggcagataat
ttggatgaattcctcaaagaatttgaaaatccagaggttcctagagaggaccagcaacag
cagcatcagcagcgtgatgttatcgatgagcccattattgaagagccaagccgcctccag
gagtcagtgatggaggccagcagaacaaacatagatgagtcagctatgcctccaccacca
cctcagggagttaagcgaaaagctggacaaattgacccagagcctgtgatgcctcctcag
caggtagagcagatggaaataccacctgtagagcttcccccagaagaacctccaaatatc
tgtcagctaataccagagttagaacttctgccagaaaaagagaaggagaaagagaaggaa
aaagaagatgatgaagaggaagaggatgaagatgcatcagggggcgatcaagatcaggaa
gaaagaagatggaacaaaaggactcagcagatgcttcatggtcttcagcgtgctcttgct
aaaactggagctgaatctatcagtttgcttgagttatgtcgaaatacgaacagaaaacaa
gctgccgcaaagttctacagcttcttggttcttaaaaagcagcaagctattgagctgaca
caggaagaaccgtacagtgacatcatcgcaacacctggaccaaggttccatattatataa