GENSCAN 1.0	Date run:  6-Nov-116	Time: 16:07:54

Sequence gi568815590r:66076890_66277477 : 200588 bp : 40.97% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   2973   3035   63  2  0   71   82    35 0.478   2.40
 1.02 Intr +   3488   3659  172  1  1  124   81   185 0.687  19.99
 1.03 Intr +  36143  36495  353  0  2   59   40   255 0.446  11.92
 1.04 Intr +  36722  36978  257  1  2   51   55   255 0.548  13.82
 1.05 Intr +  37702  37890  189  1  0   17  105   180 0.545  10.38
 1.06 Intr +  50145  50273  129  0  0   73   50    72 0.350   0.79
 1.07 Intr +  50316  50551  236  0  2   25   58   186 0.265   5.71
 1.08 Intr +  51410  51587  178  0  1   32   92   198 0.536  12.66
 1.09 Intr +  58101  58266  166  0  1   98   87   198 0.796  19.74
 1.10 Intr +  58868  58963   96  1  0   88   71    36 0.688   1.19
 1.11 Intr +  60206  60301   96  1  0   31  105   169 0.943  12.19
 1.12 Intr +  72756  72989  234  2  0   28  111   246 0.776  17.86
 1.13 Intr +  73328  73350   23  1  2   92   69    16 0.970  -4.48
 1.14 Intr +  73453  73577  125  1  2   58   68   109 0.974   5.21
 1.15 Intr +  75488  75738  251  0  2   27   91   373 0.996  27.73
 1.16 Intr +  77158  77445  288  0  0   46   92   302 0.745  22.92
 1.17 Term +  77491  77607  117  0  0   85   49    39 0.699  -2.74
 1.18 PlyA +  78468  78473    6                               1.05

 2.05 PlyA -  80117  80112    6                               1.05
 2.04 Term -  80309  80248   62  0  2  128   47    54 0.941   2.29
 2.03 Intr -  82049  81894  156  0  0   29   55   160 0.203   5.86
 2.02 Intr -  87055  86955  101  0  2   14   97    75 0.149  -0.17
 2.01 Init -  97750  97545  206  1  2   71   68   151 0.671   9.78
 2.00 Prom -  98466  98427   40                              -8.35

 3.02 PlyA -  98619  98614    6                               1.05
 3.01 Sngl - 100588  99998  591  1  0   75   41   810 0.998  68.94
 3.00 Prom - 101788 101749   40                              -7.65

 4.04 PlyA - 102282 102277    6                              -0.45
 4.03 Term - 103076 102944  133  1  1   85   45   131 0.960   5.08
 4.02 Intr - 104379 104253  127  1  1   81  111    19 0.350   2.32
 4.01 Init - 111250 111205   46  1  1   62  107    36 0.316   3.80
 4.00 Prom - 114984 114945   40                              -6.05

 5.00 Prom + 115165 115204   40                              -5.05
 5.01 Init + 115654 115702   49  0  1   44   77    43 0.011  -0.04
 5.02 Intr + 115891 116078  188  2  2   32   84   116 0.006   4.09
 5.03 Intr + 123338 123449  112  1  1  114   73    50 0.174   5.13
 5.04 Term + 125949 126124  176  1  2   87   43   117 0.242   4.04
 5.05 PlyA + 126771 126776    6                               1.05

 6.00 Prom + 130589 130628   40                              -3.25
 6.01 Init + 132693 132806  114  2  0   67   81    53 0.208   2.76
 6.02 Intr + 137698 137790   93  0  0  115   48    51 0.363   3.04
 6.03 Term + 138977 139087  111  1  0   69   40    88 0.431  -0.32
 6.04 PlyA + 141655 141660    6                               1.05

 7.04 PlyA - 142681 142676    6                               1.05
 7.03 Term - 144319 144175  145  0  1  106   48   161 0.996  10.30
 7.02 Intr - 145898 145720  179  2  2  -10   75   141 0.227   0.80
 7.01 Init - 150978 150865  114  0  0  103   75    77 0.293   8.16
 7.00 Prom - 159123 159084   40                              -5.05

 8.00 Prom + 159418 159457   40                              -5.05
 8.01 Init + 159778 159829   52  0  1   74   74    23 0.404   0.87
 8.02 Intr + 160483 160859  377  2  2   68   89   224 0.252  14.31
 8.03 Intr + 160899 160959   61  2  1   74   82    47 0.614   0.09
 8.04 Term + 172172 172335  164  0  2   55   49   172 0.962   7.12
 8.05 PlyA + 173050 173055    6                               1.05

 9.00 Prom + 194762 194801   40                              -1.45
 9.01 Init + 196283 196424  142  1  1   64   79    59 0.928   2.94
 9.02 Intr + 199018 199167  150  2  0   88   38   150 0.817   9.21
 9.03 Term + 199713 199936  224  1  2   99   42   136 0.922   6.20
 9.04 PlyA + 200325 200330    6                              -0.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 116517 116365  153  0  0   96   43    89 0.884   2.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:66076890_66277477|GENSCAN_predicted_peptide_1|990_aa
MREDARDLRRDAIQDLVTSRNALFVIVGLLTGCYFCCCLCCCCNCCCGHCRPESSVPEED
FYVSPEDLEEQIKSDMEKVAVGLLCVENTLGNHFKGQRRLVKEKYDKGGRWNRRVLASRT
PDTWVEGLSRVSQASEPERSVFLRTRRAHRPALGLCAPRITHAQCNLRLPGLALRFFCAE
PQGTPTHVHVPSIAQLPFALRERVRAGSQRSCGSALGRATAGSRLLRLLNPSLALPGPRV
TQEAAPAPGGQAGTFSSEPRAASATRGLATAAVRRWGVRGKSSGRPTGKTKQETENLETD
ADYFERLLNRGSRNCSAPSQVRRADCLALGRSEVDRTRQKVALERIHPPVTGLYGHVSPP
SRDRRLLKTAPAPTPNQGLKQCPPPRETKHLLEPLAAPFPGSTLGDSEEMSASLNYKSFS
KEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQVEQASNPYLPTRGGT
TMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSDQPMCEEHE
EERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKGLSHGPLILSRQKDSVSLY
TLPTCQPGFIHEQSELSDGIAILVGSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFD
YLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAV
FLQNAKTLLKKISEASKAFQMEKIEHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEE
EGGEGEKEGEGEVGGEAVEVEEVENVQTEFPGEDENPEKASELSQVELQAAPGALPVSSP
EPPPALPPAADAPVTQGEVVPTGSEQTTESETPVPAAAETADPLFYPSWYKGQTRKATTN
PPCTPGSEGLGQIGPPGSEDSNVRKAEVAAAAASERAAVSGKETSAPAATSQGPTGTGHS
KKKKGFQRGREKPQPGEKYRNNSSPNVGLF

>gi568815590r:66076890_66277477|GENSCAN_predicted_CDS_1|2973_bp
atgagggaggatgcaagagacttgaggagagacgctatccaggacttggtgaccagcagg
aatgccctgtttgtcatcgttggcctcttgacgggctgctacttttgctgctgcctgtgc
tgctgctgcaactgctgctgtggacactgccggcccgagtcatcagtgccagaagaggac
ttctatgtgtccccagaggatctggaggagcagatcaagtctgacatggaaaaagtcgcc
gttggattactgtgtgttgagaacacactcggcaaccactttaaaggacaacgcaggctg
gtaaaggaaaagtacgacaagggggggcggtggaatcgcagggtcttggcatcgcggacc
ccagacacctgggttgagggcctttcccgggtcagtcaggctagcgagccggagcgttct
gtctttctgcgcacgcgtagagcacacaggccggctctggggctctgcgctcctcggatt
acgcatgctcagtgcaatcttcggttgcctggactagcgctccggtttttctgtgctgaa
cctcaggggacgccgacacacgtacacgtcccttcgatagctcagctgccattcgccctg
cgggaacgtgtccgggcaggttcccagcgcagctgtgggtctgcgcttggccgagcgact
gccgggtcacgacttctgcgtcttcttaacccgtctttggcattgcccgggccccgagtc
acacaggaggcagcgccggctccagggggccaggcggggaccttctcctcagagccccgg
gcagcttctgcgacccgagggctcgcaacggctgccgtgaggaggtggggggtccgcggg
aagagttcggggagacccacagggaaaacaaaacaagaaacagagaacttggaaacggac
gctgattactttgaacgtttgctcaaccgaggaagcaggaactgttcggccccatctcaa
gtccgcagggcggactgcctggctctgggcagatccgaggtggataggacaaggcaaaag
gtagccctggagaggatccatcctcctgtcactggcttatatggacacgtcagcccaccg
tcacgtgaccgcaggctgctaaaaacagctccagcacccactccaaaccagggcctgaaa
caatgtcctccaccgagagaaacgaaacacttgctggagccactcgcagcacccttccct
ggcagcacacttggggacagcgaggagatgagcgcatctctgaattacaaatctttttcc
aaagagcagcagaccatggataacttagagaagcaactcatctgtcccatctgcttagag
atgttcacgaaacctgtggtgattctcccttgtcagcacaacctgtgtaggaaatgtgcc
agtgatattttccaggtagaacaggcctctaacccgtatttgcccacaagaggaggtacc
accatggcatcagggggccgattccgctgcccatcctgtagacatgaagtggttttggat
agacatggggtatatggacttcagaggaacctgctggtggaaaatatcattgacatctac
aagcaggagtccaccaggccagaaaagaaatccgaccagcccatgtgcgaggaacatgaa
gaggagcgcatcaacatctactgtctgaactgcgaagtacccacctgctctctgtgcaag
gtgtttggtgcacacaaagactgccaggtggctcccctcactcatgtgttccagagacag
aagggcctcagccatggccccctaattctgagcagacagaaagacagtgtctccctctac
acattaccaacctgccaacctggtttcattcatgagcagtctgagctcagtgatggcatc
gccatcctcgtgggcagcaacgatcgagtccagggagtgatcagccagctggaagacacc
tgcaaaactatcgaggaatgttgcagaaaacagaaacaagagctttgtgagaagtttgat
tacctgtatggcattttggaggagaggaagaatgaaatgacccaagtcattacccgaacc
caagaggagaaactggaacatgtccgtgctctgatcaaaaagtattctgatcatttggag
aacgtctcaaagttggttgagtcaggaattcagtttatggatgagccagaaatggcagtg
tttctgcagaatgccaaaaccctgctaaaaaaaatctcggaagcatcaaaggcatttcag
atggagaaaatagaacatggctatgagaacatgaaccacttcacagtcaacctcaataga
gaagaaaagataatacgtgaaattgacttttacagagaagatgaagatgaagaagaagaa
gaaggcggagaaggagaaaaagaaggagaaggagaagtgggaggagaagcagtagaagtg
gaagaggtagaaaatgttcaaacagagtttccaggagaagatgaaaacccagaaaaagct
tcagagctctctcaggtggagctgcaggctgcccctggggcacttccagtttcctctcca
gagccacctccagccctgccacctgctgcggatgcccctgtgacacagggggaggttgta
cccactggctctgagcagaccacagagtctgaaactccagtccctgcagcagcagaaact
gcggatcccttgttttaccctagttggtataaaggccaaacccggaaagccaccaccaac
ccaccttgcaccccagggagcgaaggtctggggcaaatagggcctccaggttctgaggat
tcgaatgtacggaaggcagaagtggcagcagccgcagcgagtgagagggcagctgtgagt
ggtaaggaaactagtgcacctgcagctacttctcagggtcccactggaacaggccacagc
aagaagaaaaagggttttcaaaggggcagagagaaacctcagccaggggaaaagtacaga
aacaattcatcccccaatgttggcttgttttga

>gi568815590r:66076890_66277477|GENSCAN_predicted_peptide_2|174_aa
MHLSQADRGAAVGMNIIHLGSSTRKRRRYGELAQNQLHCHSLELQPVPGGEEPQIQSAME
ENGNQRKKSFQTHKAKTDTVRIDKSTILVKDLKIPLSEADETVRSVSNFRRLQSGVIMAV
EFMESEGGNSSCVNIQLNECLGRNLENGLGNWDLCRHVDVSIHDMGSVDHSLEA

>gi568815590r:66076890_66277477|GENSCAN_predicted_CDS_2|525_bp
atgcatctcagccaggcagacagaggggcagcagttggaatgaatatcattcatttaggg
agttcaaccaggaaaaggagaagatatggcgagctggctcagaatcagctccactgccac
tcgctggagctgcagcctgtccctggaggggaggagcctcaaatccaatctgcaatggaa
gaaaatgggaatcagagaaaaaagagtttccaaacacataaggcaaaaactgatactgta
agaatagacaaatccacaattctagtcaaagatctcaaaattcctctctcagaagctgat
gaaacagtgaggtctgtaagtaactttaggcgacttcagagtggagtcatcatggctgtg
gagttcatggaatctgaaggaggtaatagcagctgtgtaaacattcagctaaatgagtgc
ctagggagaaatctggaaaatggtttgggaaattgggatttatgcaggcacgtggatgtc
agcatacatgacatgggctcagtggatcacagccttgaagcatga

>gi568815590r:66076890_66277477|GENSCAN_predicted_peptide_3|196_aa
MRLPLLVSAGVLLVALLPCPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQ
ARPVLLRMGEEYFLRLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATANFFRVLLQQLL
LPRRSLDSPAALAERGARNALGGHQEAPERERRSEEPPISLDLTFHLLREVLEMARAEQL
AQQAHSNRKLMEIIGK

>gi568815590r:66076890_66277477|GENSCAN_predicted_CDS_3|591_bp
atgcggctgccgctgcttgtgtccgcgggagtcctgctggtggctctcctgccctgcccg
ccatgcagggcgctcctgagccgcgggccggtcccgggagctcggcaggcgccgcagcac
cctcagcccttggatttcttccagccgccgccgcagtccgagcagccccagcagccgcag
gctcggccggtcctgctccgcatgggagaggagtacttcctccgcctggggaacctcaac
aagagcccggccgctcccctttcgcccgcctcctcgctcctcgccggaggcagcggcagc
cgcccttcgccggaacaggcgaccgccaactttttccgcgtgttgctgcagcagctgctg
ctgcctcggcgctcgctcgacagccccgcggctctcgcggagcgcggcgctaggaatgcc
ctcggcggccaccaggaggcaccggagagagaaaggcggtccgaggagcctcccatctcc
ctggatctcaccttccacctcctccgggaagtcttggaaatggccagggccgagcagtta
gcacagcaagctcacagcaacaggaaactcatggagattattgggaaataa

>gi568815590r:66076890_66277477|GENSCAN_predicted_peptide_4|101_aa
MHKQYIRIHGLKEVGVCVPLLEKKVQRLLLHYANNMGLQSKELVPNSHFTTNLLSDFRAV
VDWYRPKMEVEICIASFVTLATKEAAEVIRNEEQEISDKQL

>gi568815590r:66076890_66277477|GENSCAN_predicted_CDS_4|306_bp
atgcataagcagtatattaggattcatggactaaaagaagtgggagtttgtgtgcctctg
ctggaaaagaaagtccaaaggttattgttacattatgcaaataatatgggcttgcaatca
aaagagctggttcctaattctcactttaccactaacttgctgagtgacttcagagcagtt
gtggattggtatagacccaaaatggaagttgaaatatgcattgcatcatttgtcacatta
gctacaaaggaagcagcagaagtaatcagaaatgaggagcaggaaatttccgataaacaa
ctctga

>gi568815590r:66076890_66277477|GENSCAN_predicted_peptide_5|174_aa
MQSIVPECVCEGVAKGDSKFFSFWTLGLTPVFCQGLLDLRPQTEGCTVSFPTFEVFGLRL
ASLLLSLQTAYCGTSPCDHMWGYQALLDQLKPFLMRDVPCANEAALLIHLVLSTGGMRML
SAQAAIQSGNSRNTLEMPLTPAKENSQYLSSQNVLSTQVTCIKLMLGAAGLQNF

>gi568815590r:66076890_66277477|GENSCAN_predicted_CDS_5|525_bp
atgcaaagtattgttcctgagtgtgtttgtgagggtgttgccaaaggagactccaagttc
ttcagcttttggactcttggacttacaccagtgttttgccaggggctcttagatcttcgg
ccacagactgaaggctgcactgtcagcttccctacttttgaggtttttggactcagactg
gcttccttgctgctcagcttgcagacggcctattgtgggacttcaccttgtgatcatatg
tggggatatcaagcactcctggatcagttgaagccattcctgatgagagatgttccttgt
gccaatgaggctgctcttctcattcatttagtcctctccactggtggcatgagaatgctt
tcagcacaggcagccattcagagtgggaactccaggaacactcttgagatgccactcaca
cctgccaaagagaactcccaatacctgtcttcccagaatgtgctgtccactcaagttacc
tgcatcaaactcatgcttggtgctgctgggctgcagaatttctaa

>gi568815590r:66076890_66277477|GENSCAN_predicted_peptide_6|105_aa
MLLPENRGANTAEEWSRGLQMAPGAEIKCAAHLIKTGEPITTAFTISSSGMFLRQLKIVS
KNVSQKREKGQLIKDYLKNILEEKNQAMDKVERICLAVKLHNAKK

>gi568815590r:66076890_66277477|GENSCAN_predicted_CDS_6|318_bp
atgctgctccctgagaacagaggagcaaacacagctgaggaatggagtagaggtttgcag
atggccccaggagctgaaattaaatgtgctgctcacctcatcaagacaggggaacccatc
acgactgcgttcaccatttcttcaagtggaatgttccttcgacaacttaaaatagtttca
aaaaatgtttcacagaaaagagaaaagggccaattaatcaaggattatttgaaaaacatt
ttggaagaaaaaaatcaagcaatggataaggttgagcggatttgcctagctgtcaaattg
cataatgccaaaaagtag

>gi568815590r:66076890_66277477|GENSCAN_predicted_peptide_7|145_aa
MAPEVPSVAHAIALKGASSKLWQHSCSAESADTQIQPHTVEEGIKKRRQVGMLEWVCYAR
PGDRSEDYIPREGPDDTVVTMSVGKSESTGLVDGALLRKSDLWDPWRSCFLNLCKVDLAV
WVTVTAVAMKRHNSDLGSPAAENID

>gi568815590r:66076890_66277477|GENSCAN_predicted_CDS_7|438_bp
atggctccagaagtcccaagtgtggcccatgccatagctttgaagggtgcaagcagtaag
ctttggcagcattcatgtagtgctgaatctgcagacactcagattcaaccccatacagta
gaggaaggcataaaaaagcgcaggcaagtaggtatgctagagtgggtgtgttatgcaaga
ccaggagaccgatcagaggattatattcccagagagggcccagatgacacggtggtcacc
atgtctgttgggaaatctgagtctacagggcttgttgatggtgctcttctgaggaagagt
gacctatgggatccatggaggagctgcttcctgaatctgtgtaaagtagatcttgccgtg
tgggtaactgtgactgcggtggccatgaagaggcacaactcagacctcggatctcctgct
gcagagaacattgactga

>gi568815590r:66076890_66277477|GENSCAN_predicted_peptide_8|217_aa
MPNVGDGLMGAANHHGTGRAWLVLPAWIPRLSNSSQVRSSKGCVSKRVWGSGHGAQSGTP
AAAVGQVHQVLAQAQALCEAMARPGMLQAASVAVTREHSGTRKLGDSRNHRAPKTESQPW
LKELPGLGSLKGYSSLLLFNCNMLFQPCHLAGPKFVSCVQEEQVCWTSQRNLHQNRENEQ
AFIAMAQLYKKKWRDVVGSQGHRMEGPAGAVAEKHKL

>gi568815590r:66076890_66277477|GENSCAN_predicted_CDS_8|654_bp
atgcctaatgtaggtgatgggttgatgggtgcagcaaaccaccatggcacaggccgagct
tggctcgtgctaccagcctggatcccacgcctgtcaaactcaagccaggtgcggagtagc
aaggggtgtgtgagcaagcgagtgtgggggtctggccacggtgcacagtcaggtacgccg
gctgctgcagtggggcaggtgcaccaggtgctggcacaggcacaggctctctgtgaggct
atggccagaccaggcatgctacaagcagcttccgtggctgtcaccagggaacacagtggc
acccggaagcttggagactccaggaaccacagggccccaaagactgagtcacagccctgg
ctcaaggagctcccaggtctgggctccctaaaaggctacagttctctccttctcttcaac
tgcaacatgctctttcagccctgccacttggcaggtcccaagtttgtgtcctgtgtccag
gaagaacaagtgtgctggaccagtcaaagaaacctgcatcaaaaccgagagaatgaacaa
gccttcattgccatggcacagttatataaaaagaaatggagagatgttgtgggaagtcag
ggacaccgaatggaaggaccggctggagccgtggcagagaaacataaattgtga

>gi568815590r:66076890_66277477|GENSCAN_predicted_peptide_9|171_aa
MVNFMCNLTGVGDTEIVGETISWCVYEVFQKRLAFESVDSVNTIPHHRLFFHGSVSIRNY
SVFTGLFPPEYELCESGALPLRLFKLSQCPAQSPLALPVHISSHTDSIPHLQGSRPSLIQ
LRSLGKVPTEDAGSLGAWTMFFLLICTSTRVHRARGTASGLQPPLSKILVE

>gi568815590r:66076890_66277477|GENSCAN_predicted_CDS_9|516_bp
atggttaattttatgtgcaacctgactggagtaggggacaccgagatagttggagaaact
atttcttggtgtgtctatgaggtgtttcagaagagattagcatttgaatcagtggactca
gtaaacacgatccctcaccacaggttattttttcatggcagtgtcagcatccgaaactac
tctgtcttcactgggctcttccctccagaatatgagctctgtgagagcggggccttgccc
cttcgcctcttcaagctgtcacagtgtccagcccagagtccacttgcacttcctgtccac
atttctagccacacagactctatcccccacctgcagggctcccggccttccctgattcag
ctgaggagccttggcaaggtgcccacagaggatgctgggtctctgggagcttggaccatg
ttcttcctgctcatctgcacgtcaaccagggtgcatcgagcacgtggcacagcatctggc
ctgcagccacccctcagtaaaattcttgttgaatga