GENSCAN 1.0	Date run:  6-Nov-116	Time: 00:28:43

Sequence gi568815590r:42653182_42868430 : 215249 bp : 44.39% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   6582   6729  148  0  1   91   61    48 0.151   2.64
 1.02 Intr +  25360  25425   66  0  0  105   66    44 0.040   3.00
 1.03 Intr +  33627  33786  160  2  1   -4   86   161 0.061   6.26
 1.04 Term +  38134  38432  299  2  2   94   49   164 0.864   8.53
 1.05 PlyA +  39750  39755    6                               1.05

 2.00 Prom +  41628  41667   40                              -4.56
 2.01 Init +  44366  44417   52  1  1   71  115    45 0.476   6.47
 2.02 Intr +  55536  55687  152  1  2   77   89    47 0.440   3.58
 2.03 Intr +  77413  77522  110  0  2   43  106    56 0.182   1.98
 2.04 Intr +  78486  79368  883  0  1   49  109   688 0.925  58.33
 2.05 Term +  83303  83437  135  1  0  117   49    33 0.895   0.32
 2.06 PlyA +  85349  85354    6                               1.05

 3.00 Prom +  87391  87430   40                              -2.56
 3.01 Init +  91167  91323  157  2  1   75   79    38 0.574   1.67
 3.02 Intr +  92627  92794  168  0  0   50   68   100 0.379   4.12
 3.03 Term + 100589 100743  155  0  2   87   34    55 0.124  -1.92
 3.04 PlyA + 101002 101007    6                              -0.45

 4.07 PlyA - 101836 101831    6                               1.05
 4.06 Term - 102619 102566   54  1  0   77   54    50 0.421  -1.94
 4.05 Intr - 103643 102665  979  1  1   72   84   472 0.530  36.14
 4.04 Intr - 103856 103747  110  2  2   60   27   101 0.609   0.28
 4.03 Intr - 108653 108375  279  2  0    2   53   236 0.599   9.17
 4.02 Intr - 112023 111884  140  1  2  122   89   143 0.951  17.98
 4.01 Init - 115249 115171   79  1  1   72  100    43 0.918   3.12
 4.00 Prom - 117825 117786   40                              -4.86

 5.07 PlyA - 119648 119643    6                               1.05
 5.06 Term - 119678 119658   21  2  0  104   49     4 0.008  -3.59
 5.05 Intr - 134670 134484  187  2  1   62   55   110 0.010   4.79
 5.04 Intr - 161320 161240   81  0  0  100   89    40 0.417   4.05
 5.03 Intr - 161557 161474   84  0  0   92   33   109 0.389   4.74
 5.02 Intr - 163555 163488   68  1  2   45   97    51 0.365  -0.60
 5.01 Init - 170131 170057   75  1  0   52  108    47 0.477   4.19
 5.00 Prom - 176711 176672   40                              -5.36

 6.06 PlyA - 177634 177629    6                               1.05
 6.05 Term - 185089 184781  309  1  0  121   42   275 0.515  21.26
 6.04 Intr - 186200 186005  196  1  1   69   85     8 0.775  -1.98
 6.03 Intr - 189939 189843   97  1  1   47   61   168 0.064   9.07
 6.02 Intr - 190598 190574   25  2  1   77   95    36 0.053   0.80
 6.01 Intr - 197225 197097  129  2  0   64   98    55 0.325   4.99

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  25360  25452   93  0  0  105   49    89 0.857   4.53
S.002 Sngl +  32193  32456  264  2  0   69   43   183 0.887   7.10
S.003 Term -  72629  72363  267  2  0   10   41   253 0.858   8.29
S.004 Init - 189913 189843   71  1  2   80   61   178 0.916  14.82


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:42653182_42868430|GENSCAN_predicted_peptide_1|224_aa
XCLPDFSKATGPLLQDFSHGAAEEGDLWGDGTVCSGHQVASRFWGDSARRDQIQHAGDYS
PIPRRYLTVVQKRIKYVGIQIKRDVKDLFKENYKPLLNEIKEDTNKHSMLMDRKNQYCEN
GHTAQALGVHLLWTLGWLTGARSPIHPQPVWPIRTQSCWDKASSNPKPIVVEKQTLVPGQ
SEQDTSWSSDQAAALRNGGGGEDKVWTLLSVRQDEGKPQKRNND

>gi568815590r:42653182_42868430|GENSCAN_predicted_CDS_1|675_bp
nnctgcttgcctgactttagcaaagccactggcccccttctccaggacttttctcatgga
gctgctgaggaaggtgacctctggggtgatggtactgtgtgctcaggccatcaggtggct
tctcgcttctggggtgacagtgctagaagggatcaaatccagcatgcaggtgactacagt
cccatcccccggcgttatctcacagtggtacagaagagaataaaatacgtaggaatccaa
attaaaagggatgtgaaggacctcttcaaggagaactacaaaccgctgctcaacgaaata
aaggaggacacaaacaaacattccatgctcatggataggaagaatcaatattgtgaaaat
ggccatactgcccaagctctgggcgtccatctgctgtggacactggggtggctgaccggg
gccagaagcccaatacacccgcagcctgtttggcccatccgcacccagagttgctgggac
aaagcttcttcaaacccaaagcctatcgtggtggaaaagcagactttagtgcctggccag
tctgagcaggacacttcctggtcctccgaccaggctgcagccctgaggaacggtggcggc
ggcgaggacaaagtgtggacgctcctgtcagtcagacaagatgaggggaagcctcaaaaa
agaaacaacgactga

>gi568815590r:42653182_42868430|GENSCAN_predicted_peptide_2|443_aa
MLPDFMLVLIVLGIPSSATTGFNSIAENEDALLRHLFQGYQKWVRPVLHSNDTIKVYFGL
KISQLVDVEWTDHKLRWNPDDYGGIHSIKVPSESLWLPDIVLFENADGRFEGSLMTKVIV
KSNGTVVWTPPASYKSSCTMDVTFFPFDRQNCSMKFGSWTYDGTMVDLILINENVDRKDF
FDNGEWEILNAKGMKGNRRDGVYSYPFITYSFVLRRLPLFYTLFLIIPCLGLSFLTVLVF
YLPSDEGEKLSLSTSVLVSLTVFLLVIEEIIPSSSKVIPLIGEYLLFIMIFVTLSIIVTV
FVINVHHRSSSTYHPMAPWVKRLFLQKLPKLLCMKDHVDRYSSPEKEESQPVVKGKVLEK
KKQKQLSDGEKVLVAFLEKAADSIRYISRHVKKEHFISQVVQDWKFVAQVLDRIFLWLFL
IVSVTGSVLIFTPALKMWLHSYH

>gi568815590r:42653182_42868430|GENSCAN_predicted_CDS_2|1332_bp
atgctcccagattttatgctggttctcatcgtccttggcatcccttcctcagccaccaca
ggtttcaactcaatcgccgaaaatgaagatgccctcctcagacatttgttccaaggttat
cagaaatgggtccgccctgtattacattctaatgacaccataaaagtatattttggattg
aaaatatcccagcttgtagatgtggaatggacagaccacaagttacgctggaatcctgat
gattatggtgggatccattccattaaagttccatcagaatctctgtggcttcctgacata
gttctctttgaaaatgctgacggccgcttcgaaggctccctgatgaccaaggtcatcgtg
aaatcaaacggaactgttgtctggacccctcccgccagctacaaaagctcctgcaccatg
gacgtcacgtttttcccgttcgaccgacagaactgctccatgaagtttggatcctggact
tatgatggcaccatggttgacctcattttgatcaatgaaaatgtcgacagaaaagacttc
ttcgataacggagaatgggaaatactgaacgcaaaggggatgaaggggaacagaagggac
ggcgtgtactcctatccctttatcacgtattccttcgtcctgagacgcctgcctttattc
tataccctctttctcatcatcccctgcctggggctgtctttcctaacagttcttgtgttc
tatttaccttcggatgaaggagaaaaactttcattatccacatcggtcttggtttctctg
acagttttccttttagtgattgaagaaatcatcccatcgtcttccaaagtcattcctctc
attggagagtacctgctgttcatcatgatttttgtgaccctgtccatcattgttaccgtg
tttgtcattaacgttcaccacagatcttcttccacgtaccaccccatggccccctgggtt
aagaggctctttctgcagaaacttccaaaattactttgcatgaaagatcatgtggatcgc
tactcatccccagagaaagaggagagtcaaccagtagtgaaaggcaaagtcctcgaaaaa
aagaaacagaaacagcttagtgatggagaaaaagttctagttgcttttttggaaaaagct
gctgattccattagatacatttcgagacatgtgaagaaagaacattttatcagccaggta
gtacaagactggaaatttgtagctcaagttcttgaccgaatcttcctgtggctctttctg
atagtgtcagtaacaggctcggttctgatttttacccctgctttgaagatgtggctacat
agttaccattag

>gi568815590r:42653182_42868430|GENSCAN_predicted_peptide_3|159_aa
MASPVENNWYLNVFRMLYKNTIDWVASKLQKFIADSSGDWEAQGKVLAGLVCGAVFFPDP
PSSGLINLDDQDTPQSFILVIILSLKNQMIKHLRPHPAHGFEGSRMELEGRCTASVSASD
SRVCGKALTPWVTRDFPNCKKRSREATAQRARLILCNGG

>gi568815590r:42653182_42868430|GENSCAN_predicted_CDS_3|480_bp
atggcatctccagttgagaataactggtatctaaatgtattcaggatgctatataaaaat
accatagattgggtggcttctaaactgcagaaatttattgctgacagttctggagactgg
gaagcccaaggaaaggtgctggcaggtctggtgtgtggtgcggtgtttttcccagacccg
ccctcaagtggcttaataaacctcgatgatcaagacacgcctcagtccttcattttggtc
atcattctttctctgaaaaatcagatgatcaagcacctgaggccacatccagcacatggc
tttgagggctcccgaatggagctggagggcagatgcacagcctctgtgagtgcctcagac
agcagagtctgcggcaaagccctgactccgtgggtcaccagggactttcccaactgcaag
aaacgctccagagaagcaactgctcagagagctagactcattctttgcaacggtgggtag

>gi568815590r:42653182_42868430|GENSCAN_predicted_peptide_4|546_aa
MLTSKGQGFLHGGLCLWLCVFTPFFKGCVGCATEERLFHKLFSHYNQFIRPVENVSDPVT
VHFEVAITQLANVPLMQLLCQLIDFSKKEVQGDGTRNGVDAVGLWTPPAEMSDSSAMPIG
GIWNWMEREYDLPDRSCSIGSADISEGVHIPMGHVHTTWSFSEPAEIWNDYKLRWDPMEY
DGIETLRVPADKIWKPDIVLYNNAVGDFQVEGKTKALLKYNGMITWTPPAIFKSSCPMDI
TFFPFDHQNCSLKFGSWTYDKAEIDLLIIGSKVDMNDFWENSEWEIIDASGYKHDIKYNC
CEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSL
TVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVK
TVFLKLLPQVLLMRWPLDKTRGTGSDAVPRGLARRPAKGKLASHGEPRHLKECFHCHKSN
ELATSKRRLSHQPLQWVVENSEHSPEVEDVINSVQFIAENMKSHNETKEPMGTLDAQSDL
QCDFCS

>gi568815590r:42653182_42868430|GENSCAN_predicted_CDS_4|1641_bp
atgctgaccagcaaggggcagggattccttcatgggggcttgtgtctctggctgtgtgtg
ttcacacctttctttaaaggctgtgtgggctgtgcaactgaggagaggctcttccacaaa
ctgttttctcattacaaccagttcatcaggcctgtggaaaacgtttccgaccctgtcacg
gtacactttgaagtggccatcacccagctggccaacgtgcctttgatgcagctgctgtgt
caattaattgatttttccaagaaggaggtacagggtgatggcaccaggaatggagttgat
gctgtgggtctttggactcctccggcagagatgtctgatagcagtgccatgcccattggt
gggatctggaattggatggagagagagtatgacttgccagacaggtcctgctccataggg
tcagctgacatctctgaaggtgtccacatccccatgggccatgtccataccacctggagc
ttctccgagcctgcggaaatctggaatgattataaattgcgctgggatccaatggaatat
gatggcattgagactcttcgcgttcctgcagataagatttggaagcccgacattgttctc
tataacaatgctgttggtgacttccaagtagaaggcaaaacaaaagctcttcttaaatac
aatggcatgataacctggactccaccagctatttttaagagttcctgccctatggatatc
acctttttcccttttgatcatcaaaactgttccctaaaatttggttcctggacgtatgac
aaagctgaaattgatcttctaatcattggatcaaaagtggatatgaatgatttttgggaa
aacagtgaatgggaaatcattgatgcctctggctacaaacatgacatcaaatacaactgt
tgtgaagagatatacacagatataacctattctttctacattagaagattgccgatgttt
tacacgattaatctgatcatcccttgtctctttatttcatttctaaccgtgttggtcttt
taccttccttcggactgtggtgaaaaagtgacgctttgtatttcagtcctgctttctctg
actgtgtttttgctggtcatcacagaaaccatcccatccacatctctggtggtcccactg
gtgggtgagtacctgctgttcaccatgatctttgtcacactgtccatcgtggtgactgtg
tttgtgttgaacatacactaccgcaccccaaccacgcacacaatgcccaggtgggtgaag
acagttttcctgaagctgctgccccaggtcctgctgatgaggtggcctctggacaagaca
aggggcacaggctctgatgcagtgcccagaggccttgccaggaggcctgccaaaggcaag
cttgcaagccatggggaacccagacatcttaaagaatgcttccattgtcacaaatcaaat
gagcttgccacaagcaagagaagattaagtcatcagccattacagtgggtggtggaaaat
tcggagcactcgcctgaagttgaagatgtgattaacagtgttcagttcatagcagaaaac
atgaagagccacaatgaaaccaaggagcctatgggcactctggatgcacagtcagacctt
cagtgtgacttttgttcctga

>gi568815590r:42653182_42868430|GENSCAN_predicted_peptide_5|171_aa
MHRRTSLSNGSSINMIGPKHVLKAQRDLDKCFRLEEAHDTSPWVKICKAVCSGGITPSQR
ECELKCTGSLDRAGAELFALQVWRLPASDSYFGTGAHGLTSTCGVRGLAGSGVKLLTLTV
SVTALKAGRLELFILPGGFVVSLASGVKLQTFVVSVTAHKGSVDPKTSKLK

>gi568815590r:42653182_42868430|GENSCAN_predicted_CDS_5|516_bp
atgcatagaagaacttcattatcaaatggaagtagtataaacatgattgggcccaagcac
gtcctaaaggcacaaagagatctagacaaatgcttccgattagaagaggctcatgatact
tctccgtgggtcaagatttgtaaagcggtgtgctcgggcggcatcacacccagccagcgc
gagtgtgaactcaagtgcacgggcagccttgaccgggctggagctgagctgtttgcactg
caggtttggcgcctgcctgcatctgattcctactttgggacaggagcccatgggctgacg
agcacgtgtggggttcgtggtctcgctggctcaggagtgaagctgctgaccctcactgtg
agtgttacagctcttaaggcggggcgtctggagttgttcattcttcctggtgggttcgtg
gtctcactggcttcaggagtgaagctacagaccttcgtggtgagtgttacagctcataaa
ggcagtgtggacccaaaaacctccaaattgaaatga

>gi568815590r:42653182_42868430|GENSCAN_predicted_peptide_6|251_aa
DHSDLPGSLPGTKCLAPYMQRSPMIISSVTLLESLLSLSHRVKKLVIPEDTEVKCLRTGR
MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKEWEAAVRRKNFKPTKYSSICSEHFTP
DCFKRECNNKLLKENAVPTIFLCTEPHDKVDAAIGLLMPPLQTPVNLSVFCDHNYTVEDT
MHQRKRIHQLEQQVEKLRKKLKTAQQRCRRQERQLEKLKEVVHFQKEKDDVSERGYVILP
NDYFEIVEVPA

>gi568815590r:42653182_42868430|GENSCAN_predicted_CDS_6|756_bp
gatcacagcgaccttccaggcagtctcccaggcaccaagtgcctggctccctacatgcaa
cgcagcccgatgatcatctcaagtgtgactctgctggaaagcctgctctccctttcccac
agagtaaagaaacttgtgatacctgaagacacagaagtgaagtgcctgaggaccggaagg
atggtgcagtcctgctccgcctacggctgcaagaaccgctacgacaaggacaagcccgtt
tctttccacaagtttcctcttactcgacccagtctttgtaaagaatgggaggcagctgtc
agaagaaaaaactttaaacccaccaagtatagcagtatttgttcagagcactttactcca
gactgctttaagagagagtgcaacaacaagttactgaaagagaatgctgtgcccacaata
tttctttgtactgagccacatgacaaggttgatgctgctattggattactaatgccgcct
cttcagacccctgttaatctctcagttttctgtgaccacaactatactgtggaggataca
atgcaccagcggaaaaggattcatcagctagaacagcaagttgaaaaactcagaaagaag
ctcaagaccgcacagcagcgatgcagaaggcaagaacggcagcttgaaaaattaaaggag
gttgttcacttccagaaagagaaagacgacgtatcagaaagaggttatgtgattctacca
aatgactactttgaaatagttgaagtaccagcataa