GENSCAN 1.0	Date run: 24-Oct-119	Time: 21:42:24

Sequence gi568815590f:26478255_26755703 : 277449 bp : 44.09% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5260   5412  153  0  0   64   -9   188 0.267   6.97
 1.02 Intr +   6767   6908  142  1  1  100   80    34 0.212   3.73
 1.03 Term +  23790  23884   95  1  2   56   48    78 0.018  -1.41
 1.04 PlyA +  25732  25737    6                               1.05

 2.02 PlyA -  26453  26448    6                               1.05
 2.01 Sngl -  30501  29407 1095  0  0   88   48   838 0.981  76.80
 2.00 Prom -  31464  31425   40                              -6.86

 3.00 Prom +  33530  33569   40                              -8.76
 3.01 Init +  36072  36429  358  2  1   99   50   544 0.342  48.97
 3.02 Term +  69661  69728   68  2  2   70   54   100 0.262   2.90
 3.03 PlyA +  70170  70175    6                               1.05

 4.00 Prom +  75333  75372   40                              -3.26
 4.01 Init +  79567  79735  169  0  1   73   81   138 0.398  11.30
 4.02 Intr +  83524  83660  137  2  2   38   51    94 0.094   0.99
 4.03 Intr +  98532  98693  162  2  0  132   64     9 0.537   3.07
 4.04 Intr +  99086  99310  225  1  0   87   34   120 0.465   4.68
 4.05 Intr + 103715 103803   89  1  2  105  108    96 0.838  12.07
 4.06 Intr + 105545 105729  185  2  2   50   52   221 0.114  14.13
 4.07 Intr + 115899 115962   64  1  1   87   87    52 0.005   2.78
 4.08 Term + 117360 117444   85  0  1   96   49    52 0.008  -0.77
 4.09 PlyA + 120412 120417    6                               1.05

 5.00 Prom + 123584 123623   40                              -2.36
 5.01 Init + 138285 138375   91  2  1   51   93    80 0.459   5.45
 5.02 Intr + 145889 146053  165  0  0  115   90   150 0.990  17.83
 5.03 Intr + 148363 148424   62  2  2   56  110    53 0.971   2.75
 5.04 Intr + 148961 149083  123  1  0  116   76   148 0.689  17.18
 5.05 Intr + 149618 149686   69  1  0   80   53    80 0.872   3.08
 5.06 Intr + 156526 156646  121  0  1  123   96   247 0.999  29.07
 5.07 Intr + 157610 157678   69  0  0  116   86    43 0.957   6.05
 5.08 Intr + 165185 165341  157  0  1   91  105   137 0.999  14.77
 5.09 Intr + 165696 165837  142  0  1   80   79   223 0.999  20.96
 5.10 Intr + 169376 169546  171  1  0  119   57   317 0.983  31.84
 5.11 Intr + 174003 174182  180  2  0   47   96   317 0.989  28.46
 5.12 Intr + 174978 175143  166  2  1   89   58   115 0.997   8.13
 5.13 Term + 177361 177452   92  2  2  160   43   134 0.983  13.98
 5.14 PlyA + 179623 179628    6                               1.05

 6.11 PlyA - 179856 179851    6                               1.05
 6.10 Term - 180112 180049   64  0  1   84   48    34 0.118  -3.64
 6.09 Intr - 181288 181236   53  1  2   81  110    34 0.159   2.61
 6.08 Intr - 184450 184275  176  2  2   71   72    63 0.050   2.66
 6.07 Intr - 205446 205326  121  0  1   36    4   156 0.060   2.07
 6.06 Intr - 216487 216387  101  2  2   92  101     7 0.411   2.23
 6.05 Intr - 216988 216869  120  2  0   26   87    87 0.438   2.87
 6.04 Intr - 218116 218036   81  2  0   94   49    47 0.047   1.01
 6.03 Intr - 223490 223457   34  2  1   86   82    16 0.029  -1.40
 6.02 Intr - 238697 238603   95  0  2   67   93    42 0.043   2.28
 6.01 Init - 255593 255539   55  2  1   91   20    92 0.282   4.15
 6.00 Prom - 259977 259938   40                              -0.56

 7.00 Prom + 260349 260388   40                              -4.86
 7.01 Init + 267160 267180   21  0  0   82   76    25 0.362   0.42
 7.02 Intr + 270593 270688   96  1  0   57  109   130 0.494  12.21

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 105545 105764  220  2  1   50   49   218 0.885  10.61
S.002 Intr - 110280 110099  182  0  2   44  110   107 0.939   7.17
S.003 Intr - 118703 118667   37  1  1   98   98     2 0.832   0.46


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590f:26478255_26755703|GENSCAN_predicted_peptide_1|129_aa
MEMDVELALEANTATLVALAQTEQPMRSGGMAGVAIVSLSTEAAAFVSPVLPCEDVPASS
LPFTMIVSFLRSPQPCFLYNLQNCEPIKSLFFINYPVSVGGGHFGKKPQLLLLLLKAVQT
INGQLQLLS

>gi568815590f:26478255_26755703|GENSCAN_predicted_CDS_1|390_bp
atggaaatggatgtggagctggcactggaagcaaacacagcaactctagtggctctggcc
cagactgaacagccgatgagaagtggggggatggctggagtggccatcgtgtccctgtcc
acggaagcagcagcatttgtgtctcctgtcctgccatgtgaagatgtgcctgcttcctct
ttgcctttcaccatgattgtaagtttcctgaggtctccccagccatgcttcctgtacaac
ctgcagaactgcgagccaattaaatctcttttctttataaattacccagtctcagtggga
ggagggcactttgggaaaaagcctcagctgctgcttctgctgcttaaagcagtccagacg
attaatgggcagctccagctgctatcctga

>gi568815590f:26478255_26755703|GENSCAN_predicted_peptide_2|364_aa
MALALLEDWCRIMSVDEQKSLMVTGIPADFEEAEIQEVLQETLKSLGRYRLLGKIFRKQE
NANAVLLELLEDTDVSAIPSEVQGKGGVWKVIFKTPNQDTEFLERLNLFLEKEGQTVSGM
FRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLPMRYRKLRVFSGSAVPAPEEES
FEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPSISVEECLEAFKQV
FGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRRIADQVRLEQVMA
GATLNQMLWCRLRELKDQGPPPSFLELMKVIREEEEEEASFENESIEEPEERDGYGRWNH
EGDD

>gi568815590f:26478255_26755703|GENSCAN_predicted_CDS_2|1095_bp
atggcgctggcactgttagaggactggtgcaggataatgagtgtggatgagcagaagtca
ctgatggttacggggataccggcggactttgaggaggctgagattcaggaggtccttcag
gagactttaaagtctctgggcaggtatagactgcttggcaagatattccggaagcaggag
aatgccaatgctgtcttactagagcttctggaagatactgatgtctcggccattcccagt
gaggtccagggaaaggggggtgtctggaaggtgatctttaagacccctaatcaggacact
gagtttcttgaaagattgaacctgtttctagaaaaagaggggcagacggtctcgggtatg
tttcgagccctggggcaggagggcgtgtctccagccacagtgccctgcatctcaccagaa
ttactggcccatttgttgggacaggcaatggcacatgcgcctcagcccctgctacccatg
agataccggaaactgcgagtattctcagggagtgctgtcccagccccagaggaagagtcc
tttgaggtctggttggaacaggccacggagatagtcaaagagtggccagtaacagaggca
gaaaagaaaaggtggctggcggaaagcctgcggggccctgccctggacctcatgcacata
gtgcaggcagacaacccgtccatcagtgtagaagagtgtttggaggcctttaagcaagtg
tttgggagcctagagagccgcaggacagcccaggtgaggtatctgaagacctatcaggag
gaaggagagaaggtctcagcctatgtgttacggctagaaaccctgctccggagagcggtg
gagaaacgcgccatccctcggcgtattgcggaccaggtccgcctggagcaggtcatggct
ggggccactcttaaccagatgctgtggtgccggcttagggagctgaaggatcagggcccg
ccccccagcttccttgagctaatgaaggtaatacgggaagaagaggaggaagaggcctcc
tttgagaatgagagtatcgaagagccagaggaacgagatggctatggccgctggaatcat
gagggagacgactga

>gi568815590f:26478255_26755703|GENSCAN_predicted_peptide_3|141_aa
MAERKQSGKAAEDEEVPAFFKNLGSGSPKPRQKFCGMFCPVEGSSENKTIDFDSLSVGRG
SGQVVAQQRDVAHLGPDPQPPYSRQGRRAGGEPSVESGRKVEIRRASGKEALQNINDQVD
PLSKDDELETDKQEEKEVSLA

>gi568815590f:26478255_26755703|GENSCAN_predicted_CDS_3|426_bp
atggccgagagaaagcaatccgggaaggcggcagaggacgaagaggtccctgcttttttt
aaaaacctgggctccggcagccccaagccccggcagaaattctgtggcatgttctgcccg
gtggaagggtcctcggagaacaagaccatcgacttcgactcgctgtcggtgggccggggc
tcggggcaggtggtggctcagcagcgggacgtcgcccacttgggcccggacccgcagccg
ccgtactcgcggcagggccggcgcgccggcggagagccatctgttgaatcgggccggaag
gtggagatccggagggcctcgggcaaagaagccctgcagaacatcaacgaccaggtcgac
cctctatccaaggatgatgagttggaaacagataagcaggaggagaaagaagtctccctg
gcatga

>gi568815590f:26478255_26755703|GENSCAN_predicted_peptide_4|371_aa
MRYHYTPVRMANIHPGFSCVVASHFILTSNGEFLSLYILTPNACEDVEQQELSFIAVHSR
VRAPMKIYWLADLTGGGAQAVMLAHLLLTSYCEAQFLIGHGRLISSSPPHGAVWVPSTGT
VNPQDPGALGSQQLPPTALQAPAKCAAPPRTPQGAESSAAPGRGPGEFSASNGGGGGPGS
PPGLRGAGRRCSRALAASEAIGSAQSPHAGLPRRPPRIGAQAGRDRGARRRSDRLLIKGG
KIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDVHTRFQMPDQG
MTSADDFFQGTKAALAGGTTMINGYFHMCKVETINSYVLRLWKNLLSFQAGLQGRAAGSI
GDKFFPSGCFG

>gi568815590f:26478255_26755703|GENSCAN_predicted_CDS_4|1116_bp
atgagataccactacacacctgttaggatggccaacattcatcctggattttcatgtgta
gtggcatctcatttcatcctcaccagcaatggagagttcctgtcgctctacatcctaaca
ccaaatgcttgtgaggatgtggagcaacaggaactctcattcattgctgttcacagtagg
gttcgagctcctatgaagatctactggctggctgatctgacaggaggtggagctcaggcg
gtaatgctggctcacttgctgctcacctcctactgtgaggcccagttcctaataggccat
ggacggctcatctcctcctctccgccccacggtgcggtgtgggtcccatccactggcact
gtaaaccctcaggaccccggggcgctgggatcgcagcagctgcccccgacagcgctgcag
gcaccagcgaaatgcgctgcgcccccacgcacccctcagggagccgagtcctcagccgcg
ccagggcgggggccaggcgagttcagcgccagcaacggcgggggaggagggcccgggagc
cctcccgggctgcgcggcgccggccggcggtgcagtcgcgcgctcgccgccagcgaagcc
attggctcggcgcagtcaccccacgcggggctgccgcggcggcctccgcggattggcgcg
caggcgggcagggaccggggcgcgcgcaggcgaagcgatcgtcttctgatcaaaggaggt
aaaattgttaatgatgaccagtcgttctatgcagacatatacatggaagatgggttgatc
aagcaaataggagaaaatctgattgtgccaggaggagtgaagaccatcgaggcccactcc
cggatggtgatccccggaggaattgacgtccacactcgtttccagatgcctgatcaggga
atgacgtctgctgatgatttcttccaaggaaccaaggcggccctggctgggggaaccact
atgatcaatggctatttccacatgtgtaaagtggagacaatcaattcttatgtcttacga
ctatggaaaaatttgctgagcttccaggcagggctgcagggtcgtgctgctggaagtatt
ggtgacaaattcttccccagtgggtgtttcggctaa

>gi568815590f:26478255_26755703|GENSCAN_predicted_peptide_5|535_aa
MVLENEAVTIWNKILEMGSADRVNIQGAGEVDHVVPEPGTSLLAAFDQWREWADSKSCCD
YSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIGAI
AQVHAENGDIIAEVQGFLFRHFFITWREQQRILDLGITGPEGHVLSRPEEVEAEAVNRAI
TIANQTNCPLYITKVMSKSSAEVIAQARKKGREPFDLYGLVSTSLHHAIHMDQGTVVYGE
PITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFN
TAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPR
KGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDG
TLHVTEGSGRYIPRKPFPDFVYKRIKARSRLAELRGVPRGLYDGPVCEVSVTPKTVTPAS
SAKTSPAKQQAPPVRNLHQSGFSLSGAQIDDNIPRRTTQRIVAPPGGRANITSLG

>gi568815590f:26478255_26755703|GENSCAN_predicted_CDS_5|1608_bp
atggtgctggagaatgaggccgtgactatttggaataagatcctggagatgggcagtgct
gatagagtaaatatccagggagcaggggaagttgaccacgttgttcctgagcctgggaca
agcctgctcgctgcctttgaccagtggagggaatgggccgacagcaagtcctgctgtgac
tactctctgcatgtggacatcagtgagtggcataagggcatccaggaggagatggaagcg
cttgtgaaggatcacggggtaaattccttcctcgtgtacatggctttcaaagatcgcttc
cagctaacggattgccagatttatgaagtactgagtgtgatccgggatattggcgccata
gcccaagtccacgcagaaaatggcgacatcattgcagaggtacagggctttctttttcgt
catttcttcatcacctggagggagcagcagaggatcctggatctgggcatcacgggcccc
gagggacatgtgctgagccgacctgaggaggtcgaggccgaagccgtgaatcgtgccatc
accatcgccaaccagaccaactgcccgctgtatatcaccaaggtgatgagcaaaagctct
gctgaggtcatcgcccaggcacggaagaagggaagggagccatttgacctctatggcttg
gtttctacttccctgcatcatgcaatccacatggatcaaggaactgtggtgtatggcgag
cccatcactgccagcttgggaacggacggctcccattactggagcaagaactgggccaag
gctgctgcctttgtcacctccccacccttgagccctgatccaaccactccagactttctc
aactccttgctgtcctgtggagacctccaggtcacgggcagtgcccattgcacgtttaac
actgcccagaaggctgtaggaaaggacaacttcaccctgattccggagggcaccaatggc
actgaggagcggatgtccgtcatctgggacaaggctgtggtcactgggaagatggatgag
aaccagtttgtggctgtgaccagcaccaatgcagccaaagtcttcaacctttacccccgg
aaaggccgcattgctgtgggatccgatgccgacctggtcatctgggaccccgacagcgtt
aaaaccatctctgccaagacacacaacagctctctcgagtacaacatctttgaaggcatg
gagtgccgcggctccccactggtggtcatcagccaggggaagattgtcctggaggacggc
accctgcatgtcaccgaaggctctggacgctacattccccggaagcccttccctgatttt
gtttacaagcgtatcaaggcaaggagcaggctggctgagctgagaggggttcctcgtggc
ctgtatgacggacctgtgtgtgaagtgtctgtgacgcccaagacagtcactccagcctcc
tcggccaagacgtctcctgccaagcagcaggccccacctgtccggaacctgcaccagtct
ggattcagtttgtctggtgctcagattgatgacaacattccccgccgcaccacccagcgt
atcgtggcgccccccggtggccgtgccaacatcaccagcctgggctag

>gi568815590f:26478255_26755703|GENSCAN_predicted_peptide_6|299_aa
MGVGYIKKEEAAKYDNVEVGFHKPHDEIFAIDLFNKEKISNWTQCLLRFKLAGHVLSHQD
PAAAPDANTFLEQISTTHCIWCVAPNVPALRNMGTGLLLIVAQSGVPQKTEGGTSISTSV
VLLEEVAKVFSKLHEKNKVKKKVTLYYKVGFVLDGFAQLQANSSKCEVTAFLQVYPTARK
RQRPSRTGHDDDGGFVKKKRGKLGRHGFKETEGTRERVEVPAMGSWWGAEDRLGGGLRPE
NRTDKRLVVQDVKSGRSGREWTRFDWFTVLCHQHAVKGRLHLCLELESRGLDVAACDME

>gi568815590f:26478255_26755703|GENSCAN_predicted_CDS_6|900_bp
atgggggtgggctacattaagaaggaagaggcggcaaaatacgacaatgtggaggtagga
tttcataagccccatgatgaaatatttgctattgacttattcaataaagagaagatatcc
aactggactcaatgtttactaagatttaagttagcaggccacgtcctctcccaccaagat
ccagctgctgctccagatgccaacactttcctggagcaaatcagcacaactcattgcatc
tggtgtgtagcacccaatgtgccagctctgcgcaatatgggaactggactgctgcttatt
gtagcccaatcaggagtgccccaaaagacagaaggaggaacttcaatcagtacatctgtt
gtcctcttagaagaggtagccaaagtattcagtaagttacatgaaaaaaataaagttaaa
aagaaagttacactttattataaagtaggctttgtgttagatggttttgcccagctgcag
gctaattcttccaagtgtgaagtgacagcctttctgcaggtgtacccaacagctcggaag
agacagcgaccatcgagaacgggccatgatgatgatggcggttttgtcaaaaagaaaagg
gggaaattgggaagacatgggttcaaggaaactgagggaactcgcgagagagttgaagta
cctgccatggggtcctggtggggtgcggaggacaggctaggtggaggtttacgaccagaa
aaccgaacggacaagagactggtggtgcaggatgtcaaaagtgggcgcagtgggagggag
tggactcgatttgactggttcacagtgctctgccatcagcatgcagtgaaaggcaggctg
catctttgcttagaattagaatcccgtggcctggacgtagcagcctgtgacatggagtga

>gi568815590f:26478255_26755703|GENSCAN_predicted_peptide_7|39_aa
MRFLNVKLAFGQQDDLANVLAPVTYGLNQRGPLKLSPQQ

>gi568815590f:26478255_26755703|GENSCAN_predicted_CDS_7|117_bp
atgaggttcctgaatgtcaagcttgcatttggccaacaggatgacctggccaatgtcttg
gcaccagtcacctacggactcaaccagagaggacctctgaagctgtcccctcagcag