GENSCAN 1.0	Date run: 24-Oct-119	Time: 21:41:54

Sequence gi568815590r:23037873_23263935 : 226063 bp : 45.12% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.08 PlyA -   1063   1058    6                               1.05
 1.07 Term -   1182   1169   14  1  2  112   33    23 0.004  -2.44
 1.06 Intr -   5371   5266  106  1  1  127   84   -17 0.011   1.59
 1.05 Intr -  12175  11967  209  2  2   80   68    82 0.023   4.20
 1.04 Intr -  31070  30879  192  0  0   53   97    92 0.330   6.06
 1.03 Intr -  32996  32862  135  0  0   74   66    60 0.455   2.94
 1.02 Intr -  34553  34247  307  2  1   82   97   158 0.933  12.12
 1.01 Init -  34663  34643   21  1  0   82  100     5 0.903   0.81
 1.00 Prom -  40474  40435   40                              -3.86

 2.00 Prom +  43753  43792   40                              -7.46
 2.01 Init +  44293  44403  111  0  0   59   42    89 0.224  -0.35
 2.02 Intr +  46564  46673  110  0  2   60  109    92 0.356   7.58
 2.03 Intr +  46842  46944  103  0  1   50   72    69 0.758   1.68
 2.04 Term +  53416  53484   69  0  0  138   47    55 0.933   4.34
 2.05 PlyA +  54226  54231    6                               1.05

 3.02 PlyA -  56178  56173    6                               1.05
 3.01 Sngl -  58092  57943  150  0  0   98   42   148 0.855   5.37
 3.00 Prom -  58899  58860   40                              -6.16

 4.00 Prom +  65013  65052   40                              -3.46
 4.01 Init +  65130  65309  180  2  0   62   81   190 0.610  14.91
 4.02 Intr +  73848  73953  106  2  1  134   55    55 0.980   6.59
 4.03 Intr +  76785  76898  114  1  0  123   92    23 0.731   6.62
 4.04 Intr +  77636  77744  109  0  1   37   94   103 0.854   5.14
 4.05 Intr +  78769  79114  346  1  1  115   19   303 0.120  21.50
 4.06 Intr +  85093  85198  106  0  1   42   57   113 0.691   3.39
 4.07 Term +  90421  90569  149  2  2   82   40   140 0.818   6.66
 4.08 PlyA +  93265  93270    6                               1.05

 5.10 PlyA -  97742  97737    6                               1.05
 5.09 Term - 100131  99998  134  1  2   86   48   147 0.998   8.75
 5.08 Intr - 100388 100316   73  2  1   93   98    32 0.996   3.68
 5.07 Intr - 106763 106578  186  2  0   81  105   156 0.993  16.49
 5.06 Intr - 107217 107186   32  1  2  112   70    14 0.937  -0.15
 5.05 Intr - 108049 107796  254  0  2   88   96   130 0.983  10.88
 5.04 Intr - 109200 109089  112  1  1   60   90    93 0.995   6.14
 5.03 Intr - 110679 110566  114  1  0  135   92   -18 0.771   3.72
 5.02 Intr - 117107 117002  106  2  1  127   55    98 0.813  10.19
 5.01 Init - 126063 125914  150  0  0   24  117   144 0.250   9.31
 5.00 Prom - 126194 126155   40                               0.24

 6.02 PlyA - 132630 132625    6                               1.05
 6.01 Sngl - 136187 135864  324  2  0   65   43   167 0.807   5.90
 6.00 Prom - 143032 142993   40                              -0.26

 7.13 PlyA - 145277 145272    6                               1.05
 7.12 Term - 154141 153822  320  2  2   80   48   394 0.974  29.64
 7.11 Intr - 159332 159260   73  2  1   91   89    26 0.942   1.98
 7.10 Intr - 161576 161394  183  2  0   82  105   128 0.997  13.88
 7.09 Intr - 162045 162014   32  1  2  119   96    31 0.999   4.85
 7.08 Intr - 162728 162633   96  0  0  105   96    12 0.928   3.68
 7.07 Intr - 162888 162815   74  2  2   84   87    88 0.592   7.35
 7.06 Intr - 164047 163936  112  2  1   35   76   101 0.514   3.04
 7.05 Intr - 164889 164776  114  1  0  106   92    10 0.379   3.62
 7.04 Intr - 168921 168900   22  0  1   92   77    16 0.117  -1.98
 7.03 Intr - 169414 169179  236  2  2   75   98   136 0.111  10.71
 7.02 Intr - 174340 174244   97  1  1  114   88     5 0.037   2.68
 7.01 Init - 187015 186884  132  1  0   60  109   188 0.932  16.30
 7.00 Prom - 189245 189206   40                              -3.96

 8.00 Prom + 207192 207231   40                              -1.16
 8.01 Init + 208824 209122  299  2  2   28   77   495 0.995  37.09
 8.02 Intr + 211338 211509  172  0  1  104   98   173 0.992  19.85
 8.03 Intr + 217375 217560  186  0  0   99   86   219 0.998  22.69
 8.04 Intr + 218588 218721  134  1  2   76   78   118 0.999   9.04
 8.05 Intr + 220161 220209   49  0  1  124  105    34 0.997   7.38
 8.06 Intr + 220458 220577  120  2  0   82   21   195 0.965  12.89
 8.07 Intr + 220860 220958   99  2  0   89   77   106 0.935   9.91
 8.08 Intr + 221194 221254   61  0  1   89   95    52 0.972   4.31
 8.09 Intr + 222272 222451  180  0  0  104   64   210 0.409  20.04

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  78769  79159  391  1  1  115   48   322 0.879  25.36
S.002 Term - 180110 179949  162  2  0   94   49    81 0.836   2.74


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:23037873_23263935|GENSCAN_predicted_peptide_1|327_aa
MAAIIQKVVRKIHYMKMCSLWLGAGHQLPNSTGSGHGTVSTVPIPNLEARASLPCHFWMQ
DREPELGLWSLSRGCEQPSVATRIETFPAHSSNWGTGWVPNRKTIGRVAAGASPTSTSPC
SRAPSPIDHPRAEECGRTAREHGAGLAGSSTCNPGLKPTGLRDYKSVPYRHGTTGTERPG
RFGGPEKARPRTQGGAGSQAWAPGPQDPCARCRRGPAVVEKGTCRFAHKQPSGGSPGETS
PDSCWDPPEDCLIASYQPLNAALSLSSGWRLFCSQTKLRVGLPNNEMQVSAESALITQQD
LAPQQRAAPQQKRSSPSEGLCPPDRTI

>gi568815590r:23037873_23263935|GENSCAN_predicted_CDS_1|984_bp
atggctgctattatacagaaggttgttaggaaaatccactacatgaagatgtgcagtctc
tggctgggagcaggacaccagctgcccaacagcacaggctcagggcatggcactgtctcc
actgtccccatccccaacctggaagctagagcctcgctgccctgccacttctggatgcag
gacagagaaccggaactgggactgtggtctctcagtagaggctgtgaacagccatctgtg
gccacacggattgagacctttcctgctcactcttcaaactggggcaccggctgggtgccc
aacagaaagacaattggaagagtggcagccggagcctccccgacgagcacctccccctgc
tccagggcgcccagtcccatcgaccacccaagggctgaggagtgcgggcgcacggcgcgg
gagcacggcgcgggactggcaggcagctccacctgcaaccccgggctgaaacccacgggc
ctgagagactataagagcgttccctaccgccatggaacaacggggacagaacgccccggc
cgcttcgggggcccggaaaaggcacggcccaggacccagggaggcgcggggagccaggcc
tgggccccgggtccccaagacccttgtgctcgttgtcgccgcggtcctgctgttgtagag
aaagggacgtgtagatttgcacataaacagccctctggagggtcccctggggaaacctca
cctgacagctgctgggatcctcctgaagactgtctcatcgcaagctaccagccgctgaac
gcggcactgtccttatcttctggctggcgacttttttgttcccagaccaaactgagggtg
gggctgcccaataatgagatgcaggtctcagctgagtctgctctgatcacccaacaagac
ctagctccccagcagagagcggccccacaacaaaagaggtccagcccctcagagggattg
tgtccacctgataggaccatctag

>gi568815590r:23037873_23263935|GENSCAN_predicted_peptide_2|130_aa
MGGEILPLWEALTTFQFSLLRPETGPGFDDWQLLKGPRETRLSSHRLLSPDDQVPGVIKE
QPLSCVEKAMETARRCQKTRSPDNLSSERAENPPGEYGGTLQREKAKWVSCHSVTNLILL
STAINSTFNT

>gi568815590r:23037873_23263935|GENSCAN_predicted_CDS_2|393_bp
atgggaggagaaatcctccctctgtgggaggcactgactacattccagttctccctccta
cgcccagagactggaccagggtttgatgactggcaacttctcaaggggccgcgtgagact
cgcttgtcctcccaccgcctgctctctcctgatgaccaggttccaggagttatcaaagaa
cagcctctgagctgcgtggagaaagccatggagacagccaggcgctgccagaagacaagg
tcaccagataatctgtcctcagagagggctgagaacccacccggggagtatggaggaacc
ctacagagggagaaagcaaaatgggtctcttgccactcagttactaacctgattcttctc
tccacggccatcaactcgacttttaatacatga

>gi568815590r:23037873_23263935|GENSCAN_predicted_peptide_3|49_aa
MAEGDGEAGTFFTRRQEKEKRVKEELPNPYKTIRSRENYHENSMRKPPP

>gi568815590r:23037873_23263935|GENSCAN_predicted_CDS_3|150_bp
atggcggaaggagatggggaagctggcaccttcttcacaaggcggcaggagaaagagaag
agagtgaaggaggaactgccaaacccttataaaaccatcagaagtcgcgagaactatcat
gagaacagcatgaggaaaccacccccatga

>gi568815590r:23037873_23263935|GENSCAN_predicted_peptide_4|369_aa
MQGVKERFLPLGNSGDRAPRPPDGRGRVRPRTQDGVGNHTMARIPKTLKFVVVIVAVLLP
VLAYSATTARQEEVPQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASN
NEPSCFPCTVCKSDQKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKCSRCPSGEVQVSN
CTSWDDIQCVEEFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTT
SPGTPAPAAEETMTTSPGTPAPAAEETMITSPGTPASSHYLSCTIPEDLLSDICVKQYSS
ILTVKGNCQWTEPRTPCGTVAQRLCFYNFGQILPFNSWNPLMRQPSLMDNEILMARADAA
IPGNALYGC

>gi568815590r:23037873_23263935|GENSCAN_predicted_CDS_4|1110_bp
atgcaaggggtgaaggagcgcttcctaccgttagggaactctggggacagagcgccccgg
ccgcctgatggccgaggcagggtgcgacccaggacccaggacggcgtcgggaaccatacc
atggcccggatccccaagaccctaaagttcgtcgtcgtcatcgtcgcggtcctgctgcca
gtcctagcttactctgccaccactgcccggcaggaggaagttccccagcagacagtggcc
ccacagcaacagaggcacagcttcaagggggaggagtgtccagcaggatctcatagatca
gaacatactggagcctgtaacccgtgcacagagggtgtggattacaccaacgcttccaac
aatgaaccttcttgcttcccatgtacagtttgtaaatcagatcaaaaacataaaagttcc
tgcaccatgaccagagacacagtgtgtcagtgtaaagaaggcaccttccggaatgaaaac
tccccagagatgtgccggaagtgtagcaggtgccctagtggggaagtccaagtcagtaat
tgtacgtcctgggatgatatccagtgtgttgaagaatttggtgccaatgccactgtggaa
accccagctgctgaagagacaatgaacaccagcccggggactcctgccccagctgctgaa
gagacaatgaacaccagcccggggactcctgccccagctgctgaagagacaatgaccacc
agcccggggactcctgccccagctgctgaagagacaatgaccaccagcccggggactcct
gccccagctgctgaagagacaatgatcaccagcccggggactcctgcctcttctcattac
ctctcatgcaccatccctgaggacctgctgtcagacatctgtgtaaagcagtacagctcc
atcctcacagtcaaagggaactgtcaatggacagagcccagaaccccctgcggcactgtg
gctcagaggctgtgcttctacaactttggacagatcctaccctttaactcctggaacccg
ctcatgaggcagccgagcctcatggacaatgagatcctcatggccagagctgatgcagcg
atccctgggaatgccttgtacggatgctag

>gi568815590r:23037873_23263935|GENSCAN_predicted_peptide_5|386_aa
MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPR
QDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTV
CKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKC
KNESAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYL
KGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQEL
AELTGVTVELPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATLEEGHAKE
TIQDQLVGSEKLFYEEDEAGSATSCL

>gi568815590r:23037873_23263935|GENSCAN_predicted_CDS_5|1161_bp
atgggactttggggacaaagcgtcccgaccgcctcgagcgctcgagcagggcgctatcca
ggagccaggacagcgtcgggaaccagaccatggctcctggaccccaagatccttaagttc
gtcgtcttcatcgtcgcggttctgctgccggtccgggttgactctgccaccatcccccgg
caggacgaagttccccagcagacagtggccccacagcaacagaggcgcagcctcaaggag
gaggagtgtccagcaggatctcatagatcagaatatactggagcctgtaacccgtgcaca
gagggtgtggattacaccattgcttccaacaatttgccttcttgcctgctatgtacagtt
tgtaaatcaggtcaaacaaataaaagttcctgtaccacgaccagagacaccgtgtgtcag
tgtgaaaaaggaagcttccaggataaaaactcccctgagatgtgccggacgtgtagaaca
gggtgtcccagagggatggtcaaggtcagtaattgtacgccccggagtgacatcaagtgc
aaaaatgaatcagctgccagttccactgggaaaaccccagcagcggaggagacagtgacc
accatcctggggatgcttgcctctccctatcactaccttatcatcatagtggttttagtc
atcattttagctgtggttgtggttggcttttcatgtcggaagaaattcatttcttacctc
aaaggcatctgctcaggtggtggaggaggtcccgaacgtgtgcacagagtccttttccgg
cggcgttcatgtccttcacgagttcctggggcggaggacaatgcccgcaacgagaccctg
agtaacagatacttgcagcccacccaggtctctgagcaggaaatccaaggtcaggagctg
gcagagctaacaggtgtgactgtagagttgccagaggagccacagcgtctgctggaacag
gcagaagctgaagggtgtcagaggaggaggctgctggttccagtgaatgacgctgactcc
gctgacatcagcaccttgctggatgcctcggcaacactggaagaaggacatgcaaaggaa
acaattcaggaccaactggtgggctccgaaaagctcttttatgaagaagatgaggcaggc
tctgctacgtcctgcctgtga

>gi568815590r:23037873_23263935|GENSCAN_predicted_peptide_6|107_aa
MRDLAPRASSCGGCTGSPSSASPLALCSISHRALAAFLRRRARDLQPAMPEASHPLHGFL
CGPSLPDEHLPLLHGAPIPWTTQGLRSVSTRHGTGGQLHLQPQCGIH

>gi568815590r:23037873_23263935|GENSCAN_predicted_CDS_6|324_bp
atgagggacttagccccccgggccagcagctgcggagggtgtactgggtcccccagcagt
gccagcccactggccctgtgctcgatttctcaccgagccttagctgccttcctgcggcgc
agggctcgggacctgcagcccgccatgcctgaggcctcccacccactccatgggttcctg
tgcggcccaagcctccccgacgagcacctccccctgctccatggcgccccaatcccatgg
accacccaaggtctgaggagtgtgagcacacggcacgggactggcgggcagctccacctg
cagccccagtgcgggatccactag

>gi568815590r:23037873_23263935|GENSCAN_predicted_peptide_7|496_aa
MGQHGPSARARAGRAPGPRPAREASPRLRVHKTFKFVVVGVLLQVVPSSAATIKLHDQSI
GTQQWEHSPLGELCPPGLIRVLNLGHINIIELLHNLFDLVLVGFNIYNEHKCVVVVFYLL
HGILSGQWKLDDSIVVKLVSPGGALQSLSILGHRKEFAPFIQGSHRSEHPGACNRCTEGV
GYTNASNNLFACLPCTACKSDEEERSPCTTTRNTACQCKPGTFRNDNSAEMCRKCSRGCP
RGMVKVKDCTPWSDIECVHKESGNGHNIWVILVVTLVVPLLLVAVLIVCCCIGSGCGGDP
KCMDRVCFWRLGLLRGPGAEDNAHNEILSNADSLSTFVSEQQMESQEPADLTGVTVQSPG
EAQCLLGPAEAEGSQRRRLLVPANGADPTETLMLFFDKFANIVPFDSWDQLMRQLDLTKN
EIDVVRAGTAGPGDALYAMLMKWVNKTGRNASIHTLLDALERMEERHAREKIQDLLVDSG
KFIYLEDGTGSAVSLE

>gi568815590r:23037873_23263935|GENSCAN_predicted_CDS_7|1491_bp
atgggacagcacggacccagtgcccgggcccgggcagggcgcgccccaggacccaggccg
gcgcgggaagccagccctcggctccgggtccacaagaccttcaagtttgtcgtcgtcggg
gtcctgctgcaggtcgtacctagctcagctgcaaccatcaaacttcatgatcaatcaatt
ggcacacagcaatgggaacatagccctttgggagagttgtgtccaccaggcctaatcagg
gtgttgaaccttggccacataaacatcatagagcttcttcacaacctgtttgatctggtg
cttgttggttttaacatctacaatgaacacaagtgtgttgttgtcgtcttctatcttctt
catggcatactcagtggtcagtggaagcttgatgatagcatagtggtcaagcttgtttct
cctgggggtgctctccagagtctcagtatcttgggccaccggaaggaatttgcccctttc
atccaaggatctcatagatcagaacatcctggagcctgtaaccggtgcacagagggtgtg
ggttacaccaatgcttccaacaatttgtttgcttgcctcccatgtacagcttgtaaatca
gatgaagaagagagaagtccctgcaccacgaccaggaacacagcatgtcagtgcaaacca
ggaactttccggaatgacaattctgctgagatgtgccggaagtgcagcagagggtgcccc
agagggatggtcaaggtcaaggattgtacgccctggagtgacatcgagtgtgtccacaaa
gaatcaggcaatggacataatatatgggtgattttggttgtgactttggttgttccgttg
ctgttggtggctgtgctgattgtctgttgttgcatcggctcaggttgtggaggggacccc
aagtgcatggacagggtgtgtttctggcgcttgggtctcctacgagggcctggggctgag
gacaatgctcacaacgagattctgagcaacgcagactcgctgtccactttcgtctctgag
cagcaaatggaaagccaggagccggcagatttgacaggtgtcactgtacagtccccaggg
gaggcacagtgtctgctgggaccggcagaagctgaagggtctcagaggaggaggctgctg
gttccagcaaatggtgctgaccccactgagactctgatgctgttctttgacaagtttgca
aacatcgtgccctttgactcctgggaccagctcatgaggcagctggacctcacgaaaaat
gagatcgatgtggtcagagctggtacagcaggcccaggggatgccttgtatgcaatgctg
atgaaatgggtcaacaaaactggacggaacgcctcgatccacaccctgctggatgccttg
gagaggatggaagagagacatgcaagagagaagattcaggacctcttggtggactctgga
aagttcatctacttagaagatggcacaggctctgccgtgtccttggagtga

>gi568815590r:23037873_23263935|GENSCAN_predicted_peptide_8|434_aa
MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
LEAELEKLSLSEGX

>gi568815590r:23037873_23263935|GENSCAN_predicted_CDS_8|1302_bp
atgtggtccccggagcgggaggccgaggccccagccgggggagacccggcgggccttctg
ccccccgagtgggaggaggacgaggagcgcatgtccttcctgttctccgctttcaagagg
agtcgcgaggtgaacagcaccgactgggacagcaagatgggcttctgggcgccgttggtg
ctgagccacagccgccgccagggggtggtgcgcctgcgtctgcgggacttgcaggaggcc
tttcagcgcaaggggagcgtcccgctggggctggccacggtgctgcaggacctgctgcgt
cgaggggagctgcagcgggagtcagacttcatggccagtgtagacagcagctggatctcc
tggggggttggggtcttcctgctgaagcctctcaagtggactctttctaacatgctggga
gataataaggttccagctgaggaggtccttgtcgctgtggagctgttgaaggaaaaggct
gaggaggtgtatcgtctgtatcagaactcgcccctctcctcccaccccgtggtggccctg
tcagagctcagcaccctctgtgctaactcctgcccagatgagaggaccttctacttggtg
ttgctgcagctgcagaaggagaagagggtcacagtcctcgagcagaacggggagaagatt
gtgaagtttgcccgagggccacgtgccaaggtctctccagtcaatgacgtagatgttggg
gtgtaccagctgatgcagagtgaacagcttctctcacgcaaagtggagtccttatcccag
gaagcagagaggtgtaaagaagaagcccgccgggcatgccgagcaggaaagaagcagctg
gcactgaggtctctcaaggccaagcaacggacagagaagcgcatcgaggccttgcatgcc
aagctggacactgttcaaggcatcctggaccggatctatgcctcccagacagatcagatg
gtttttaacgcctaccaggctggggtaggagcactcaaactctccatgaaggatgtcaca
gtggagaaggcagagagcctcgtggatcagatccaagagctctgtgacacccaggatgaa
gtttctcagactctggctggtggggtaacaaatggcttagattttgacagtgaagaactg
gagaaggaattggacatcctccttcaggataccaccaaagaacctttggatctgcctgac
aacccccgcaataggcattttaccaacagcgtgcctaaccctaggatctcagatgctgaa
cttgaagctgaacttgagaaactgtccttatcagagggagnn