GENSCAN 1.0	Date run:  6-Nov-116	Time: 16:13:04

Sequence gi568815590r:20149725_20355181 : 205457 bp : 45.57% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 Intr -   1020    942   79  1  1   98   88    63 0.179   5.91
 1.04 Intr -   6360   6277   84  1  0   92   59    62 0.265   3.49
 1.03 Intr -   7358   7209  150  0  0   26   84    92 0.367   2.73
 1.02 Intr -  12409  12329   81  2  0   90   91    22 0.527   2.31
 1.01 Init -  15220  15145   76  1  1  117  106   100 0.991  15.11
 1.00 Prom -  15424  15385   40                              -7.36

 2.08 PlyA -  16772  16767    6                               1.05
 2.07 Term -  19229  19204   26  0  2   80   42    20 0.285  -5.01
 2.06 Intr -  21770  21681   90  0  0   72  107   112 0.631  11.47
 2.05 Intr -  23404  23312   93  2  0   85  106    75 0.950   8.94
 2.04 Intr -  24720  24637   84  1  0   77   92    41 0.893   3.19
 2.03 Intr -  28769  28711   59  1  2   97   83    29 0.971   1.83
 2.02 Intr -  29760  29397  364  1  1   94   70   278 0.969  20.84
 2.01 Init -  31240  31117  124  1  1   81   79   153 0.948  14.21
 2.00 Prom -  36130  36091   40                              -3.66

 3.00 Prom +  44798  44837   40                              -4.26
 3.01 Init +  47683  47818  136  0  1  101   70   164 0.961  15.20
 3.02 Intr +  54760  54815   56  2  2  126   85    18 0.965   4.00
 3.03 Intr +  59709  59807   99  2  0   93  111    40 0.992   7.11
 3.04 Intr +  60622  60715   94  0  1  104   27   104 0.957   5.44
 3.05 Intr +  60845  60922   78  0  0  109   69    89 0.986   8.62
 3.06 Intr +  61453  61592  140  2  2    5   78    88 0.906  -0.32
 3.07 Intr +  61928  62029  102  1  0   64   78    32 0.498   0.17
 3.08 Intr +  62378  62475   98  1  2   54  111    77 0.985   5.41
 3.09 Intr +  63058  63181  124  1  1   71  107   107 0.998  11.49
 3.10 Intr +  65094  65244  151  2  1   56  115    30 0.801   2.24
 3.11 Intr +  66689  66771   83  0  2   80   84    60 0.940   4.16
 3.12 Intr +  68429  68558  130  1  1  103   90   154 0.992  17.37
 3.13 Intr +  75065  75156   92  0  2    9  115    33 0.011  -2.19
 3.14 Term +  81028  81291  264  0  0   13   41   197 0.280   3.01
 3.15 PlyA +  90442  90447    6                               1.05

 4.06 PlyA -  90472  90467    6                               1.05
 4.05 Term - 100639  99998  642  1  0   94   55  1399 0.999 131.37
 4.04 Intr - 103861 103058  804  1  0  115   78  1212 0.992 114.55
 4.03 Intr - 105507 105113  395  1  2   90  103   477 0.019  43.77
 4.02 Intr - 117586 117443  144  2  0   72   78   102 0.845   7.85
 4.01 Init - 120152 120065   88  2  1   63   72   114 0.660   8.10
 4.00 Prom - 127478 127439   40                              -4.06

 5.03 PlyA - 129241 129236    6                               1.05
 5.02 Term - 132928 132819  110  2  2   53   43   110 0.247   1.67
 5.01 Init - 138033 137985   49  0  1   86   89    30 0.276   2.01
 5.00 Prom - 138874 138835   40                              -3.26

 6.05 PlyA - 139220 139215    6                               1.05
 6.04 Term - 142784 142722   63  2  0   83   48    54 0.276  -1.21
 6.03 Intr - 144686 144631   56  0  2   97   64    43 0.194   1.50
 6.02 Intr - 153743 153654   90  0  0  127   59    53 0.241   6.27
 6.01 Init - 178114 178069   46  1  1   93   62    62 0.594   4.94

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 105457 105113  345  1  0  107  103   508 0.878  51.41


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:20149725_20355181|GENSCAN_predicted_peptide_1|157_aa
MGVAILEPTLPIWMMQTMCSPKWQLVQCPSTVPAMAQVGPDVAWPPTLEGASGTSAYRIS
YAHRCSSPAPVFPPFLTTKKGVQAAGLWWSITSVPNIAFAIRGPVPVLKYWVISSKALAK
ELRLGDCIAQGLAFLPASVSYLIGTNLFGVLANKMGR

>gi568815590r:20149725_20355181|GENSCAN_predicted_CDS_1|471_bp
atgggggtggccatcctggagcccacactgcccatctggatgatgcagaccatgtgctcc
cccaagtggcagctggtgcagtgcccctcaactgtgccagccatggctcaagtgggccca
gatgtggcctggcctcccactctggagggtgcaagtgggacatctgcttaccggattagt
tacgctcaccgatgtagcagtcctgcacctgttttcccgcctttcttgaccacaaagaaa
ggagtccaggctgctggattatggtggtccattaccagcgtgcccaacattgcctttgcg
atcaggggcccagttccagtgttaaagtactgggtcatcagttctaaggccctcgccaag
gagctgaggcttggagattgtattgcacagggtctagctttcttgcctgccagtgtgtcc
tacctcattggcaccaacctctttggtgtgttggccaacaagatgggtcgn

>gi568815590r:20149725_20355181|GENSCAN_predicted_peptide_2|279_aa
MLRTILDAPQRLLKEGRASRQLVLVVVFVALLLDNMLFTVVVPIVPTFLYDMEFKEVNSS
LHLGHAGSSPHALASPAFSTIFSFFNNNTVAVEESVPSGIAWMNDTASTIPPPATEAISA
HKNNCLQGTGFLEEEITRVGVLFASKAVMQLLVNPFVGPLTNRIGYHIPMFAGFVIMFLS
TVMFAFSGTYTLLFVARTLQGIGSSFSSVAGLGMLASVYTDDHERGRAMGTALGGLALGL
LVGAPFGSVMYEFVGKSAPFLILAFLALLDGDLLSIDDS

>gi568815590r:20149725_20355181|GENSCAN_predicted_CDS_2|840_bp
atgctccggaccattctggatgctccccagcggttgctgaaggaggggagagcgtcccgg
cagctggtgctggtggtggtattcgtcgctttgctcctggacaacatgctgtttactgtg
gtggtgccaattgtgcccaccttcctatatgacatggagttcaaagaagtcaactcttct
ctgcacctcggccatgccggaagttccccacatgccctcgcctctcctgccttttccacc
atcttctccttcttcaacaacaacaccgtggctgttgaagaaagcgtacctagtggaata
gcatggatgaatgacactgccagcaccatcccacctccagccactgaagccatctcagct
cataaaaacaactgcttgcaaggcacaggtttcttggaggaagagattacccgggtcggg
gttctgtttgcttcaaaggctgtgatgcaacttctggtcaacccattcgtgggccctctc
accaacaggattggatatcatatccccatgtttgctggctttgttatcatgtttctctcc
acagttatgtttgctttttctgggacctatactctactctttgtggcccgaacccttcaa
ggcattggatcttcattttcatctgttgcaggtcttggaatgctggccagtgtctacact
gatgaccatgagagaggacgagccatgggaactgctctggggggcctggccttggggttg
ctggtgggagctccctttggaagtgtaatgtacgagtttgttgggaagtctgcacccttc
ctcatcctggccttcctggcactactggatggagatttgttatccattgatgattcttga

>gi568815590r:20149725_20355181|GENSCAN_predicted_peptide_3|548_aa
MALRAMRGIVNGAAPELPVPTGGPAVGAREQALAVSRNYLSQPRLTYKTVSGVNGPLVIL
DHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILR
TPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGM
NSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMET
ARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDM
SSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDD
ITHPIPDLTGYITEGQIYVDRQLHNRQYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFL
QKFERNFIAQVALKCGPSTKEASLVIYLLDVHCSDKTWKVQPCPIRERVPFPRGEAPGKA
ALGITPRQQLLMPERGSPPSPAVAAPLDPEAQPPLLSLVTDNAYRLCHQLFQSKNYLSAQ
CPKKRERA

>gi568815590r:20149725_20355181|GENSCAN_predicted_CDS_3|1647_bp
atggcgctgcgggcgatgcgggggattgtcaacggggccgcacccgagctacccgtgccc
accggtgggccggcggtgggagctcgggagcaggcgctggcagtcagtcggaactacctc
tcccagcctcgcctcacatacaagacagtatctggagtcaatggtccactagtgatctta
gatcatgttaagtttcccaggtatgctgaaattgtccatttgaccttaccggatggcaca
aagagaagtgggcaagttctggaagttagtggttccaaggcagtagttcaggtatttgaa
gggacttcaggtatagatgctaagaaaacgtcctgtgagtttactggggatattctccga
acaccggtgtctgaggatatgcttggtcgggtattcaatggatcgggaaaacccattgac
agaggtcctgttgtactggccgaagacttccttgatatcatgggtcagccaatcaaccct
caatgtcgaatctacccagaggaaatgattcagactggcatttcggccatcgatgggatg
aacagtattgctagggggcagaaaattcctatcttctctgctgctgggctaccacacaat
gagattgcagctcagatctgtcgccaggctggtttggtaaagaaatccaaagatgtagta
gactacagtgaggaaaattttgcaattgtatttgctgctatgggtgtaaacatggaaact
gcccggttcttcaaatctgactttgaagaaaatggctcaatggacaatgtctgcctcttt
ttgaacttggctaatgacccaaccattgagcgaattatcactcctcgcctggctctaacc
acagctgaatttctggcgtaccaatgtgagaaacatgtattggttattctaacagacatg
agttcttatgctgaagcacttcgagaggtttcagcagccagggaagaggtacctggtcga
cgaggttttccaggttacatgtatacagatttagccacgatatatgaacgcgctgggcga
gtggaagggagaaacggctcgattactcaaatccctattctaaccatgcctaatgatgat
atcactcaccccatcccagacttgactggctacattacagaggggcagatctatgtggac
agacagctgcacaacagacagtatgcgtgctatgctattggaaaggatgtgcaagccatg
aaagctgtcgttggagaagaagcccttacctcagatgatcttctctacttggaatttctg
cagaagtttgagaggaacttcattgctcaggtcgcactcaagtgtggccctagcaccaag
gaagcttcattagtgatttacctactagatgttcattgttcagataaaacttggaaagtg
cagccctgtcccatcagggagcgagtgcccttcccccgaggagaagctccagggaaagca
gccctgggcatcacccccaggcagcagctgctcatgcccgagagagggagcccaccttcc
ccagctgtggctgctcccttagaccccgaggcccagccaccactgctcagtttggtcact
gacaatgcctacagattgtgtcaccagttattccagagcaagaattacctctcagctcag
tgcccgaaaaaacgagagagggcttga

>gi568815590r:20149725_20355181|GENSCAN_predicted_peptide_4|690_aa
MEDPGLESEEDHSVDLGTVKEDQNFGERGAPNMETRSTLLGSQHPGDKEAGGKEHKDDAR
NQGTRQPRQHPPPGCLRAFPRPCPALPHPQPRVTMGSVSSLISGHSFHSKHCRASQYKLR
KSSHLKKLNRYSDGLLRFGFSQDSGHGKSSSKMGKSEDFFYIKVSQKARGSHHPDYTALS
SGDLGGQAGVDFDPSTPPKLMPFSNQLEMGSEKGAVRPTAFKPVLPRSGAILHSSPESAS
HQLHPAPPDKPKEQELKPGLCSGALSDSGRNSMSSLPTHSTSSSYQLDPLVTPVGPTSRF
GGSAHNITQGIVLQDSNMMSLKALSFSDGGSKLGHSNKADKGPSCVRSPISTDECSIQEL
EQKLLEREGALQKLQRSFEEKELASSLAYEERPRRCRDELEGPEPKGGNKLKQASQKSQR
AQQVLHLQVLQLQQEKRQLRQELESLMKEQDLLETKLRSYEREKTSFGPALEETQWEVCQ
KSGEISLLKQQLKESQTEVNAKASEILGLKAQLKDTRGKLEGLELRTQDLEGALRTKGLE
LEVCENELQRKKNEAELLREKVNLLEQELQELRAQAALARDMGPPTFPEDVPALQRELER
LRAELREERQGHDQMSSGFQHERLVWKEEKEKVIQYQKQLQQSYVAMYQRNQRLEKALQQ
LARGDSAGEPLEVDLEGADIPYEDIIATEI

>gi568815590r:20149725_20355181|GENSCAN_predicted_CDS_4|2073_bp
atggaagaccctggtctagagagtgaagaggaccacagtgtggacctggggacagtgaag
gaagatcagaattttggagagaggggagcccccaacatggagaccaggtctacactcttg
ggctctcagcaccctggggacaaagaagcaggaggaaaagaacacaaggacgatgccaga
aaccaggggacccgacagcccagacagcatcctccaccagggtgcctgagagcctttcca
agaccctgcccggccctgccccatcctcagccccgagtcaccatgggcagcgtcagtagc
ctcatctccggccacagcttccacagcaagcactgccgggcttcgcagtacaagctgcgc
aagtcctcccacctcaagaagctcaaccggtattccgacgggctgctgaggtttggcttc
tcccaggactccggtcacggcaagtccagctccaaaatgggcaagagcgaagacttcttc
tacatcaaggtcagccagaaagcccggggctcccatcacccagattacacggcactgtcc
agcggggatttagggggccaggctggggtggactttgacccgtccacaccccccaagctc
atgcccttctccaatcagctagaaatgggctccgagaagggtgcagtgaggcccacagcc
ttcaagcctgtgctgccacggtcaggagccatcctgcactcctccccggagagtgccagc
caccagctgcaccccgcccctccagacaagcccaaggagcaggagctgaagcctggcctg
tgctctggggcgctgtcagactccggccggaactccatgtccagcctgcccacacacagc
accagcagcagctaccagctggacccgctggtcacacccgtgggacccacaagccgtttt
gggggctccgcccacaacatcacccagggcatcgtcctccaggacagcaacatgatgagc
ctgaaggctctgtccttctccgacggaggtagcaagctgggccactcgaacaaggcagac
aagggcccctcgtgtgtccgctcccccatctccacggacgagtgcagcatccaggagctg
gagcagaagctgttggagagggagggcgccctccagaagctgcagcgcagctttgaggag
aaggagcttgcctccagcctggcctacgaggagcggccgcggcgctgcagggacgagctg
gagggcccggagcccaaaggcggcaacaagctcaagcaggcctcgcagaagagccagcgc
gcgcagcaggtcctgcacctgcaggtactgcagcttcagcaggagaagcggcagctccgg
caggagctcgagagcctcatgaaggagcaggacctgctggagaccaagctcaggtcctac
gagagggagaagaccagcttcggccccgcgctggaggagacccagtgggaggtgtgccag
aagtcaggcgagatctccctcctgaagcagcagctgaaggagtcccagacggaggtgaac
gccaaggctagcgagatcctgggtctcaaggcacagctgaaggacacgcggggcaagctg
gagggcctggagctgaggacccaggacctggagggcgccctgcgcaccaagggcctggag
ctggaggtctgtgagaatgagctgcagcgcaagaagaacgaggcggagctgctgcgggag
aaggtgaacctgctggagcaggagctgcaggagctgcgggcccaggccgccctggcccgc
gacatggggccgcccaccttccccgaggacgtccctgccctgcagcgggagctggagcgg
ctgcgggccgagctgcgggaggagcggcaaggccatgaccagatgtcctcgggcttccag
catgagcggctcgtgtggaaggaggagaaggagaaggtgattcagtaccagaaacagctg
cagcagagctacgtggccatgtaccagcggaaccagcgcctggagaaggccctgcagcag
ctggcacgtggggacagcgccggggagcccttggaggttgacctggaaggggctgacatc
ccctacgaggacatcatagccactgagatctga

>gi568815590r:20149725_20355181|GENSCAN_predicted_peptide_5|52_aa
MGLHHFGQAGLELLISGQPLTTENYLAFVNNAKVEKPKHNLNAKGKTTVQSN

>gi568815590r:20149725_20355181|GENSCAN_predicted_CDS_5|159_bp
atggggttgcaccattttggtcaggctggtctcgaactcctgatctcaggacagcccctt
acaacagagaattacctagcctttgtcaataatgccaaggtggagaagcccaagcacaac
ttaaatgcgaaaggaaaaactacagttcaaagcaattag

>gi568815590r:20149725_20355181|GENSCAN_predicted_peptide_6|84_aa
MVGNDNKKGPPVTRADGVRLFPAPMLILAGTSVLGDTGVGGEEVGGPQLALLKGCAAGWW
LVGQGSVTAKAVLVAVANSRYFQN

>gi568815590r:20149725_20355181|GENSCAN_predicted_CDS_6|255_bp
atggtgggcaacgacaataagaagggaccaccagtgacaagggcagacggggttcgtcta
ttcccagcaccgatgctgatcctggcggggacgtcagtgttaggtgacactggtgtcgga
ggtgaagaagtgggaggcccgcagctggccctgctcaaaggctgtgcagccggctggtgg
ctggtggggcagggttctgtgacagcaaaggctgtgctggtcgcagttgctaacagtcgg
tactttcaaaactga