Result of FASTA (omim) for pF1KB6450
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6450, 349 aa
  1>>>pF1KB6450     349 - 349 aa - 349 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6625+/-0.000337; mu= -0.8281+/- 0.021
 mean_var=307.3086+/-63.751, 0's: 0 Z-trim(123.9): 66  B-trim: 0 in 0/54
 Lambda= 0.073162
 statistics sampled from 46416 (46482) to 46416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.503), width:  16
 Scan time:  4.730

The best scores are:                                      opt bits E(92320)
NP_689901 (OMIM: 610487) KH domain-containing, RNA ( 349) 2353 261.2 2.7e-69
XP_016865834 (OMIM: 610487) KH domain-containing,  ( 299) 1990 222.8 8.1e-58
XP_016865832 (OMIM: 610487) KH domain-containing,  ( 305) 1990 222.8 8.2e-58
XP_011533817 (OMIM: 610487) KH domain-containing,  ( 324) 1811 204.0 4.2e-52
XP_016865831 (OMIM: 610487) KH domain-containing,  ( 316) 1810 203.8 4.4e-52
NP_001337551 (OMIM: 610487) KH domain-containing,  ( 366) 1810 203.9 4.9e-52
XP_011533822 (OMIM: 610487) KH domain-containing,  ( 285) 1805 203.3 5.9e-52
XP_016865830 (OMIM: 610487) KH domain-containing,  ( 322) 1805 203.3 6.5e-52
XP_011533818 (OMIM: 610487) KH domain-containing,  ( 322) 1805 203.3 6.5e-52
XP_011533821 (OMIM: 610487) KH domain-containing,  ( 302) 1800 202.8 8.9e-52
XP_011533819 (OMIM: 610487) KH domain-containing,  ( 320) 1800 202.8 9.3e-52
XP_016865829 (OMIM: 610487) KH domain-containing,  ( 362) 1800 202.8   1e-51
XP_016865828 (OMIM: 610487) KH domain-containing,  ( 362) 1800 202.8   1e-51
XP_016865825 (OMIM: 610487) KH domain-containing,  ( 367) 1800 202.8   1e-51
XP_016865824 (OMIM: 610487) KH domain-containing,  ( 381) 1800 202.9 1.1e-51
XP_016865823 (OMIM: 610487) KH domain-containing,  ( 413) 1800 202.9 1.1e-51
XP_016865836 (OMIM: 610487) KH domain-containing,  ( 251) 1725 194.8 1.9e-49
NP_006549 (OMIM: 610421) KH domain-containing, RNA ( 346) 1504 171.6 2.5e-42
NP_006550 (OMIM: 602489) KH domain-containing, RNA ( 443) 1434 164.3   5e-40
XP_011515098 (OMIM: 610421) KH domain-containing,  ( 346) 1361 156.5 8.7e-38
XP_005250814 (OMIM: 610421) KH domain-containing,  ( 318) 1353 155.6 1.5e-37
XP_011515099 (OMIM: 610421) KH domain-containing,  ( 319) 1353 155.6 1.5e-37
XP_016865833 (OMIM: 610487) KH domain-containing,  ( 300) 1322 152.3 1.4e-36
XP_005250815 (OMIM: 610421) KH domain-containing,  ( 302) 1283 148.2 2.4e-35
XP_011515100 (OMIM: 610421) KH domain-containing,  ( 303) 1165 135.7 1.3e-31
XP_024302820 (OMIM: 610421) KH domain-containing,  ( 274) 1132 132.2 1.4e-30
XP_024302821 (OMIM: 610421) KH domain-containing,  ( 252) 1030 121.4 2.3e-27
XP_011515101 (OMIM: 610421) KH domain-containing,  ( 252)  970 115.1 1.9e-25
NP_001258807 (OMIM: 602489) KH domain-containing,  ( 404)  876 105.4 2.5e-22
XP_016865835 (OMIM: 610487) KH domain-containing,  ( 277)  773 94.3 3.6e-19
XP_016865827 (OMIM: 610487) KH domain-containing,  ( 364)  769 94.0 5.8e-19
XP_016866992 (OMIM: 609590) protein quaking isofor ( 318)  476 63.0 1.1e-09
XP_011534560 (OMIM: 609590) protein quaking isofor ( 340)  476 63.1 1.1e-09
NP_996735 (OMIM: 609590) protein quaking isoform 2 ( 319)  475 62.9 1.2e-09
NP_996737 (OMIM: 609590) protein quaking isoform 4 ( 319)  475 62.9 1.2e-09
NP_996736 (OMIM: 609590) protein quaking isoform 3 ( 325)  475 62.9 1.2e-09
XP_016866991 (OMIM: 609590) protein quaking isofor ( 337)  475 63.0 1.2e-09
NP_006766 (OMIM: 609590) protein quaking isoform 1 ( 341)  475 63.0 1.2e-09
XP_016866993 (OMIM: 609590) protein quaking isofor ( 311)  469 62.3 1.8e-09
XP_011534561 (OMIM: 609590) protein quaking isofor ( 317)  469 62.3 1.8e-09
NP_001288014 (OMIM: 609590) protein quaking isofor ( 333)  469 62.3 1.9e-09
XP_011534563 (OMIM: 609590) protein quaking isofor ( 198)  385 53.2   6e-07
XP_011534562 (OMIM: 609590) protein quaking isofor ( 293)  270 41.3  0.0036
NP_001333338 (OMIM: 601516) splicing factor 1 isof ( 433)  260 40.4  0.0098
XP_024304448 (OMIM: 601516) splicing factor 1 isof ( 433)  260 40.4  0.0098


>>NP_689901 (OMIM: 610487) KH domain-containing, RNA-bin  (349 aa)
 initn: 2353 init1: 2353 opt: 2353  Z-score: 1365.8  bits: 261.2 E(92320): 2.7e-69
Smith-Waterman score: 2353; 99.7% identity (99.7% similar) in 349 aa overlap (1-349:1-349)

               10        20        30        40        50        60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
              250       260       270       280       290       300

              310       320       330       340         
pF1KB6 EYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYREHPYGRY
       ::::::::::::::::::::::::: :::::::::::::::::::::::
NP_689 EYYDYGHGVSEDAYDSYAPEEWATTRSSLKAPPQRSARGGYREHPYGRY
              310       320       330       340         

>>XP_016865834 (OMIM: 610487) KH domain-containing, RNA-  (299 aa)
 initn: 1990 init1: 1990 opt: 1990  Z-score: 1159.6  bits: 222.8 E(92320): 8.1e-58
Smith-Waterman score: 1990; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
XP_016 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQRY 
              250       260       270       280       290          

              310       320       330       340         
pF1KB6 EYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYREHPYGRY

>>XP_016865832 (OMIM: 610487) KH domain-containing, RNA-  (305 aa)
 initn: 1990 init1: 1990 opt: 1990  Z-score: 1159.5  bits: 222.8 E(92320): 8.2e-58
Smith-Waterman score: 1990; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
XP_016 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQRTY
              250       260       270       280       290       300

              310       320       330       340         
pF1KB6 EYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYREHPYGRY
                                                        
XP_016 RVCGQ                                            
                                                        

>>XP_011533817 (OMIM: 610487) KH domain-containing, RNA-  (324 aa)
 initn: 1800 init1: 1800 opt: 1811  Z-score: 1057.0  bits: 204.0 E(92320): 4.2e-52
Smith-Waterman score: 1811; 91.4% identity (95.0% similar) in 302 aa overlap (1-300:1-302)

               10        20        30        40        50        60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
              190       200       210       220       230       240

              250       260       270        280       290         
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGY-GGEYDDQTYETYDNSYATQTQS-
       ::::::::::::::::::::::::::::::.   .  ::  : .  :.  .: . .... 
XP_011 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYASCVSLPGGPADKKINEVLTSSPSPKSNTH
              250       260       270       280       290       300

      300       310       320       330       340         
pF1KB6 VPEYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYREHPYGRY
       .:                                                 
XP_011 IPTSTKLVGGSQAACVNILLPTVT                           
              310       320                               

>>XP_016865831 (OMIM: 610487) KH domain-containing, RNA-  (316 aa)
 initn: 1800 init1: 1800 opt: 1810  Z-score: 1056.6  bits: 203.8 E(92320): 4.4e-52
Smith-Waterman score: 1946; 94.6% identity (94.6% similar) in 314 aa overlap (1-297:1-314)

               10        20        30        40        50        60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
              190       200       210       220       230       240

              250       260       270                        280   
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEY-----------------GYDDGYGGEYDDQ
       ::::::::::::::::::::::::::::::                 :::::::::::::
XP_016 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYPSLPLSLFFDTVAKSHQGYDDGYGGEYDDQ
              250       260       270       280       290       300

           290       300       310       320       330       340   
pF1KB6 TYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYRE
       ::::::::::::::                                              
XP_016 TYETYDNSYATQTQRY                                            
              310                                                  

>>NP_001337551 (OMIM: 610487) KH domain-containing, RNA-  (366 aa)
 initn: 1800 init1: 1800 opt: 1810  Z-score: 1055.8  bits: 203.9 E(92320): 4.9e-52
Smith-Waterman score: 2309; 95.1% identity (95.1% similar) in 366 aa overlap (1-349:1-366)

               10        20        30        40        50        60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
              190       200       210       220       230       240

              250       260       270                        280   
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEY-----------------GYDDGYGGEYDDQ
       ::::::::::::::::::::::::::::::                 :::::::::::::
NP_001 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYPSLPLSLFFDTVAKSHQGYDDGYGGEYDDQ
              250       260       270       280       290       300

           290       300       310       320       330       340   
pF1KB6 TYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYRE
       :::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
NP_001 TYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTRSSLKAPPQRSARGGYRE
              310       320       330       340       350       360

             
pF1KB6 HPYGRY
       ::::::
NP_001 HPYGRY
             

>>XP_011533822 (OMIM: 610487) KH domain-containing, RNA-  (285 aa)
 initn: 1890 init1: 1805 opt: 1805  Z-score: 1054.3  bits: 203.3 E(92320): 5.9e-52
Smith-Waterman score: 1805; 99.6% identity (99.6% similar) in 272 aa overlap (1-272:1-272)

               10        20        30        40        50        60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
       :::::::::::::::::::::::::::::: :                            
XP_011 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYCYQRSESYRKCHPSY               
              250       260       270       280                    

              310       320       330       340         
pF1KB6 EYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYREHPYGRY

>>XP_016865830 (OMIM: 610487) KH domain-containing, RNA-  (322 aa)
 initn: 1800 init1: 1800 opt: 1805  Z-score: 1053.6  bits: 203.3 E(92320): 6.5e-52
Smith-Waterman score: 1946; 94.6% identity (94.6% similar) in 314 aa overlap (1-297:1-314)

               10        20        30        40        50        60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
              190       200       210       220       230       240

              250       260       270                        280   
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEY-----------------GYDDGYGGEYDDQ
       ::::::::::::::::::::::::::::::                 :::::::::::::
XP_016 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYPSLPLSLFFDTVAKSHQGYDDGYGGEYDDQ
              250       260       270       280       290       300

           290       300       310       320       330       340   
pF1KB6 TYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYRE
       ::::::::::::::                                              
XP_016 TYETYDNSYATQTQRTYRVCGQ                                      
              310       320                                        

>>XP_011533818 (OMIM: 610487) KH domain-containing, RNA-  (322 aa)
 initn: 1800 init1: 1800 opt: 1805  Z-score: 1053.6  bits: 203.3 E(92320): 6.5e-52
Smith-Waterman score: 1946; 94.6% identity (94.6% similar) in 314 aa overlap (1-297:1-314)

               10        20        30        40        50        60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
              190       200       210       220       230       240

              250       260       270                        280   
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEY-----------------GYDDGYGGEYDDQ
       ::::::::::::::::::::::::::::::                 :::::::::::::
XP_011 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYPSLPLSLFFDTVAKSHQGYDDGYGGEYDDQ
              250       260       270       280       290       300

           290       300       310       320       330       340   
pF1KB6 TYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTSSSLKAPPQRSARGGYRE
       ::::::::::::::                                              
XP_011 TYETYDNSYATQTQRTYRVCGQ                                      
              310       320                                        

>>XP_011533821 (OMIM: 610487) KH domain-containing, RNA-  (302 aa)
 initn: 1800 init1: 1800 opt: 1800  Z-score: 1051.1  bits: 202.8 E(92320): 8.9e-52
Smith-Waterman score: 1800; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KB6 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEDSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVPPVAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVP
       ::::::::::::::::::::::::::::::                              
XP_011 GVPTPRARGAPTVPGYRAPPPPAHEAYEEYPSLPLSLFFDTVAKSHQCYQRSESYRKCHP
              250       260       270       280       290       300




349 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:40:38 2019 done: Thu Oct 24 21:40:39 2019
 Total Scan time:  4.730 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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