Result of FASTA (ccds) for pF1KE1218
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1218, 213 aa
  1>>>pF1KE1218     213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2692+/-0.000887; mu= 2.6516+/- 0.054
 mean_var=186.6356+/-36.475, 0's: 0 Z-trim(113.2): 27  B-trim: 7 in 2/52
 Lambda= 0.093881
 statistics sampled from 13800 (13817) to 13800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.424), width:  16
 Scan time:  2.410

The best scores are:                                      opt bits E(32554)
CCDS4577.1 HIST1H1C gene_id:3006|Hs108|chr6        ( 213) 1308 188.3   3e-48
CCDS4586.1 HIST1H1E gene_id:3008|Hs108|chr6        ( 219) 1106 161.0 5.3e-40
CCDS4597.1 HIST1H1D gene_id:3007|Hs108|chr6        ( 221) 1053 153.8 7.7e-38
CCDS4635.1 HIST1H1B gene_id:3009|Hs108|chr6        ( 226)  978 143.7 8.9e-35
CCDS4569.1 HIST1H1A gene_id:3024|Hs108|chr6        ( 215)  799 119.4 1.7e-27
CCDS34349.1 HIST1H1T gene_id:3010|Hs108|chr6       ( 207)  524 82.1 2.7e-16


>>CCDS4577.1 HIST1H1C gene_id:3006|Hs108|chr6             (213 aa)
 initn: 1308 init1: 1308 opt: 1308  Z-score: 979.7  bits: 188.3 E(32554): 3e-48
Smith-Waterman score: 1308; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE1 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVA
              130       140       150       160       170       180

              190       200       210   
pF1KE1 KPKKAAKSAAKAVKPKAAKPKVVKPKKAAPKKK
       :::::::::::::::::::::::::::::::::
CCDS45 KPKKAAKSAAKAVKPKAAKPKVVKPKKAAPKKK
              190       200       210   

>>CCDS4586.1 HIST1H1E gene_id:3008|Hs108|chr6             (219 aa)
 initn: 931 init1: 931 opt: 1106  Z-score: 831.7  bits: 161.0 E(32554): 5.3e-40
Smith-Waterman score: 1106; 86.9% identity (93.9% similar) in 214 aa overlap (1-212:1-213)

               10        20        30        40        50        60
pF1KE1 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLA
       :::::::::::  ::::.:::::: :.::.. ::::::::::::::::::::::::::::
CCDS45 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS45 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVA
       ::::..: :::.:::::::::.:.::::::::::::::::::::. .:: ::::::::.:
CCDS45 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKK-AKSPKKAKAA
              130       140       150       160        170         

              190         200       210        
pF1KE1 KPKKAAKSAAKA--VKPKAAKPKVVKPKKAAPKKK     
       ::::: :: :::  :::::::::..::: : :::      
CCDS45 KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
     180       190       200       210         

>>CCDS4597.1 HIST1H1D gene_id:3007|Hs108|chr6             (221 aa)
 initn: 1231 init1: 882 opt: 1053  Z-score: 792.8  bits: 153.8 E(32554): 7.7e-38
Smith-Waterman score: 1053; 81.1% identity (90.5% similar) in 222 aa overlap (1-213:1-221)

               10        20        30          40        50        
pF1KE1 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTP--RKASGPPVSELITKAVAASKERSGVS
       :::::: ::.   ::::.:::::: ::::.:   ::::::::::::::::::::::::::
CCDS45 MSETAPLAPTIPAPAEKTPVKKKA-KKAGATAGKRKASGPPVSELITKAVAASKERSGVS
               10        20         30        40        50         

       60        70        80        90       100       110        
pF1KE1 LAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS45 LAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEGKP
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KE1 KVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAK
       :.::::..::.::.::::::::.::.:::::: ::::::.::::.:. ::::::: ::.:
CCDS45 KAKKAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPATAAGTKKVAKSAKKVK
     120       130       140       150       160       170         

      180       190              200       210   
pF1KE1 VAKPKKAAKSAAKA-------VKPKAAKPKVVKPKKAAPKKK
       . .::::::: :::       .:::..::::.: ::::::::
CCDS45 TPQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAAPKKK
     180       190       200       210       220 

>>CCDS4635.1 HIST1H1B gene_id:3009|Hs108|chr6             (226 aa)
 initn: 737 init1: 737 opt: 978  Z-score: 737.8  bits: 143.7 E(32554): 8.9e-35
Smith-Waterman score: 978; 79.4% identity (89.9% similar) in 218 aa overlap (1-211:1-214)

               10        20        30           40        50       
pF1KE1 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGT---PRKASGPPVSELITKAVAASKERSGV
       :::::::  :.  :.::.:.::::.:::.:.    :::.::::::::::::::::::.:.
CCDS46 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE1 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
               70        80        90       100       110       120

       120       130        140       150       160       170      
pF1KE1 PKVKKAGGTKPKKPVGAA-KKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKK
       ::.::::..: :::.::. :: :::::.   ::..::::::::::::: : :::::::::
CCDS46 PKAKKAGAAKAKKPAGATPKKAKKAAGA---KKAVKKTPKKAKKPAAAGV-KKVAKSPKK
              130       140          150       160        170      

        180        190         200       210             
pF1KE1 AKVA-KPKKAAKSAAK--AVKPKAAKPKVVKPKKAAPKKK          
       ::.: :::::.:: ::  ::::::::::..::: : ::            
CCDS46 AKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
        180       190       200       210       220      

>>CCDS4569.1 HIST1H1A gene_id:3024|Hs108|chr6             (215 aa)
 initn: 585 init1: 511 opt: 799  Z-score: 607.1  bits: 119.4 E(32554): 1.7e-27
Smith-Waterman score: 799; 67.7% identity (83.4% similar) in 223 aa overlap (1-213:1-215)

               10        20           30        40        50       
pF1KE1 MSETAPAAPAAAPPAEKAPVKKKA---AKKAGGTPRKASGPPVSELITKAVAASKERSGV
       ::::.: ::::.   ::  . :::   :: :... .: .:: :::::..:...::::.::
CCDS45 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE1 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::.: :.:
CCDS45 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KE1 PKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKA
       : ..:.. :: :  .::.:: :::.:..  :::.: ::::::::::   :.: .:.::: 
CCDS45 PGASKVA-TKTKA-TGASKKLKKATGAS--KKSVK-TPKKAKKPAA---TRKSSKNPKKP
               130        140         150        160          170  

       180       190              200       210   
pF1KE1 KVAKPKKAAKSAAKA--VKPKAAK-----PKVVKPKKAAPKKK
       :..::::.::: :::  :::::::     ::..::::::::::
CCDS45 KTVKPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK
            180       190       200       210     

>>CCDS34349.1 HIST1H1T gene_id:3010|Hs108|chr6            (207 aa)
 initn: 531 init1: 379 opt: 524  Z-score: 406.0  bits: 82.1 E(32554): 2.7e-16
Smith-Waterman score: 553; 52.7% identity (73.2% similar) in 220 aa overlap (1-212:1-207)

               10          20          30        40        50      
pF1KE1 MSETAPAAPAAAPPA--EKAPVKKKAAKKAG--GTPRKASGPPVSELITKAVAASKERSG
       ::::.::: :.:  :  :: :.::.. : ::  .. ::. .  ::.:::.:...:.:: :
CCDS34 MSETVPAASASAGVAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE1 VSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEA
       .::.::::::::::::::::::::::.:::::.:: ::::.::::::::::.::.    .
CCDS34 MSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKST
               70        80        90       100       110       120

        120       130         140       150       160       170    
pF1KE1 KPKVKKAGGTKPKKPVGA--AKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSP
       . :.::. ..: :: : .  .:.:: :           :: :.:::: :.:   :...: 
CCDS34 RSKAKKSVSAKTKKLVLSRDSKSPKTA-----------KTNKRAKKPRATT--PKTVRSG
              130       140                  150       160         

          180         190       200       210   
pF1KE1 KKAKVAKPKKAAKSA--AKAVKPKAAKPKVVKPKKAAPKKK
       .::: :: :.  ::   :.: : : .. . :. .::. :: 
CCDS34 RKAKGAKGKQQQKSPVKARASKSKLTQHHEVNVRKATSKK 
       170       180       190       200        




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov 11 16:59:36 2016 done: Fri Nov 11 16:59:36 2016
 Total Scan time:  2.410 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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