GENSCAN 1.0	Date run:  8-Nov-116	Time: 00:54:57

Sequence gi568815593r:175859972_176068208 : 208237 bp : 45.70% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  18769  18799   31  0  1   97   78    63 0.964   6.30
 1.02 Intr +  18937  19112  176  2  2  117   82   381 0.997  40.06
 1.03 Intr +  19877  20070  194  1  2   82   15   399 0.215  30.29
 1.04 Intr +  20647  20758  112  1  1   38   91    54 0.150   1.08
 1.05 Intr +  20798  20918  121  1  1   71   38    33 0.416  -3.33
 1.06 Intr +  23208  23423  216  1  0   49   89    95 0.547   4.18
 1.07 Intr +  24274  24411  138  2  0  103   64    13 0.558   0.84
 1.08 Intr +  40564  40677  114  2  0  116   68    23 0.021   3.52
 1.09 Intr +  45471  45605  135  1  0   -2   76   163 0.088   6.64
 1.10 Intr +  51682  51720   39  2  0   96  100     8 0.518   1.00
 1.11 Intr +  63129  63168   40  1  1  118   77    68 0.111   5.98
 1.12 Intr +  90197  90284   88  2  1   81   80    -5 0.003  -2.03
 1.13 Intr +  94952  95026   75  1  0  115   68    38 0.919   4.21
 1.14 Intr +  95663  95737   75  1  0   50   80    73 0.624   2.41
 1.15 Term +  96443  96583  141  1  0  114   54    78 0.979   4.93
 1.16 PlyA +  97990  97995    6                               1.05

 2.07 PlyA -  98664  98659    6                               1.05
 2.06 Term - 100161  99998  164  1  2   76   54   146 0.966   8.10
 2.05 Intr - 101180 101080  101  1  2   74   93    69 0.984   5.75
 2.04 Intr - 101463 101302  162  2  0   99  111   160 0.953  18.49
 2.03 Intr - 105184 104980  205  2  1   49   94   226 0.522  17.56
 2.02 Intr - 107296 107140  157  1  1   88   57    66 0.522   3.08
 2.01 Init - 108318 107971  348  0  0   45   85   533 0.560  43.89
 2.00 Prom - 116444 116405   40                              -6.26

 3.00 Prom + 118951 118990   40                              -3.36
 3.01 Init + 122377 122488  112  0  1   73   40    71 0.330   1.17
 3.02 Intr + 133248 133359  112  1  1   81  100    41 0.233   4.04
 3.03 Intr + 146221 146416  196  1  1    4    7   260 0.066   8.92
 3.04 Intr + 146774 146905  132  1  0   72  -18   297 0.940  18.34
 3.05 Intr + 147287 147376   90  1  0   60   41   121 0.035   4.79
 3.06 Intr + 163919 163945   27  1  0  113   96    17 0.057   3.31
 3.07 Intr + 171641 171724   84  1  0   42   91    78 0.254   3.52
 3.08 Intr + 174000 174031   32  2  2  100   75     7 0.387  -2.47
 3.09 Intr + 174475 174698  224  1  2   88   62   111 0.260   6.27
 3.10 Intr + 180716 180876  161  0  2   72  105   323 0.191  32.11
 3.11 Intr + 184764 184901  138  2  0   36   49   107 0.003   2.26
 3.12 Intr + 185178 185307  130  2  1   27   60    99 0.071   1.27
 3.13 Term + 185511 185725  215  1  2   40   45   134 0.020   1.69
 3.14 PlyA + 189981 189986    6                               1.05

 4.00 Prom + 194223 194262   40                              -4.96
 4.01 Init + 195168 195939  772  2  1   64   28   253 0.457  11.76
 4.02 Term + 196024 196970  947  2  2   30   47   315 0.305  13.85
 4.03 PlyA + 197903 197908    6                               1.05

 5.05 PlyA - 197933 197928    6                               1.05
 5.04 Term - 201099 200824  276  0  0   49   55   124 0.446   0.66
 5.03 Intr - 201320 201247   74  0  2   37   61    72 0.458  -1.47
 5.02 Intr - 201889 201724  166  1  1  105   89   145 0.851  15.83
 5.01 Init - 203828 203787   42  2  0   86   87     8 0.818   0.92

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  11976  11711  266  1  2   41   52   214 0.805   8.77
S.002 Term -  39016  38798  219  1  0   51   51   124 0.907   2.04
S.003 Term + 147071 147262  192  1  0    9   46   205 0.866   5.82
S.004 Intr - 185745 185611  135  2  0   42  121   137 0.893  12.08


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:175859972_176068208|GENSCAN_predicted_peptide_1|564_aa
MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
LKYLPGPLQDMFKNPGAPPSPAPTWRDMAPAKLVPSNGSFVDFSSFVEEPQVLGPHCQAG
PSLLSQGAARPPENTWSHRVAMVYAMGNTSIGKGPGSHAWEELPERSKKAAVDRPGLGTS
DRSGSPNMDVLPSKSRSSQKVSLTAKLCRVLLQMESGSRDTIPESILQPQGLSVPHGPPP
HPPHTHTISDTPSPEPLWVPLPENAVKSHGSWGPFDAGPTLIYPRNTVSGPCSVSPGSHT
DTCHMRSQLCHDHPKRSGSSDILQNITLIQYTDVIMLIRQIDKQYLACWKPKGKVRPMDT
VPAYEGHLEKFEDESDIKWPNSKATSSEAGPWPAPQSKSAFAHIRTSMVSKLKLLCPLAS
AHQQCDIFPTKNQIYGAPVVPDSGQVVPGDSVTDAAGQRHLLLPLTIFTSRTLTATPWLG
SKLQQRPPTCPLSCTHLCSTQGLH

>gi568815593r:175859972_176068208|GENSCAN_predicted_CDS_1|1695_bp
atggacttcgtcatgaagcaggcccttggaggggccacaaaggacatggggaagatgctg
gggggagaggaggagaaggaccccgacgcgcagaaaaaggaggaggagcggcaggaggcg
ctgcggcagcaggaggaggagcgtaaggccaagcacgcgcgcatggaggcggagcgggag
aaggtccggcagcagatccgagataagtatgggctgaagaagaaggaggagaaggaagca
gaggagaaagcagccctggagcagccctgcgaggggagcctgacccggcccaagaaggcc
atccctgcgggctgcggggacgaggaggaggaggaagaggagagcatcctggacacggtg
ctcaaatacctgcccgggccgctgcaggacatgttcaagaacccaggggcacccccttcc
ccagcccccacctggagagacatggcccctgccaagctggtcccttcaaatggatccttt
gtggactttagctcatttgtggaggaaccccaggtcctgggcccccactgccaggctggg
cccagcttgctcagtcaaggggctgccaggcccccagaaaacacttggagccatcgggta
gcgatggtctatgccatggggaacacctccattgggaagggcccaggatcccatgcctgg
gaggagctgccagagagaagcaaaaaggcggctgtggatcgccctgggctgggcaccagt
gacaggtcaggatctccaaacatggacgtcctcccctccaaatccagaagctcccagaag
gtgtccttaactgcaaagctgtgcagggtactcctccagatggaatcaggaagtcgagac
accatcccagaatcaattcttcagccccaggggctgagtgttccccatggaccacccccc
caccccccgcacacacacaccatctctgacaccccttcccccgagcccctctgggtgccg
cttcctgagaatgctgtcaagtcgcacggaagctggggcccctttgatgctggacccact
ctgatataccccagaaacacggtcagtgggccatgcagtgtgtctccaggcagccacaca
gacacgtgtcacatgcgatcacagctctgtcatgaccatccaaaaagatctggatcatcg
gacatcctgcagaacatcacactgatccagtacactgatgtcatcatgctgatcaggcag
atagacaagcagtacctagcatgctggaagccaaagggaaaagtgagacccatggatact
gtcccagcgtacgaaggccatttggagaaatttgaagatgaatcagatattaaatggcct
aattccaaagccacctcctctgaagctggcccatggcctgcaccccagtccaaaagtgct
ttcgcccacatcaggacctccatggtctccaagctaaagcttctctgtcccctggcttct
gcccatcagcagtgtgacatctttcccacaaagaaccagatctatggtgccccagtggtc
cctgacagcgggcaagttgtacccggtgactctgtcactgacgctgctggtcagcgacat
ctcctactgcccctgaccatcttcacgtccaggacactgacggccacaccttggcttggc
tccaagctgcagcaacgcccccccacctgtcccctgtcctgcactcacctctgctctacc
caaggcctgcactga

>gi568815593r:175859972_176068208|GENSCAN_predicted_peptide_2|378_aa
MRAAAAPGLTAPWRLLQCCELEAGELGMAVPAAAMGPSALGQSGPGSMAPWCSVSSGPSR
YVLGMQELFRGHSKTREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDRLVKEN
NYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDG
QTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPE
LKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLS
FSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKY
DSSREAGTVKLFGLPNDS

>gi568815593r:175859972_176068208|GENSCAN_predicted_CDS_2|1137_bp
atgcgtgcggcagcggcgccaggactgactgcgccgtggaggctgctgcagtgttgtgag
ttggaagctggggagctcggcatggcggtccccgctgcagccatggggccctcggcgttg
ggccagagcggccccggctcgatggccccgtggtgctcagtgagcagcggcccgtcgcgc
tacgtgcttgggatgcaggagctgttccggggccacagcaagacgcgcgagttcctggcg
cacagcgccaaggtgcactcggtggcctggagttgcgacgggcgtcgcctagcctcgggg
tccttcgacaagacggccagcgtcttcttgctggagaaggaccggttggtcaaagaaaac
aattatcggggacatggggatagtgtggaccagctttgttggcatccaagtaatcctgac
ctatttgttacggcgtccggagataaaaccattcgcatctgggatgtgaggactacaaaa
tgcattgccactgtgaacactaaaggggagaacattaatatctgctggagtcctgatggg
cagaccattgctgtaggcaacaaggatgatgtggtgacctttattgatgccaagacacac
cgttccaaagcagaagagcagttcaagttcgaggtcaacgaaatctcctggaacaatgac
aataatatgttcttcctgacaaatggcaatggttgtatcaacatcctcagctacccagaa
ctgaagcctgtgcagtccatcaacgcccatccttccaactgcatctgtatcaagtttgac
cccatggggaagtactttgccacaggaagtgcagatgctttggtcagcctctgggatgtg
gatgagttagtgtgtgttcggtgcttttccaggctggattggcctgtaagaaccctcagt
ttcagccatgatgggaaaatgctggcgtcagcatcggaagatcattttattgacattgct
gaagtggagacaggggacaaactatgggaggtacagtgtgagtctccgaccttcacagtg
gcgtggcaccccaaaaggcctctgctggcatttgcctgtgatgacaaagacggcaaatat
gacagcagccgggaagccggaactgtgaagctgtttgggcttcctaatgattcttga

>gi568815593r:175859972_176068208|GENSCAN_predicted_peptide_3|550_aa
MRYHLTPIRIAIIKKEKQKKKANVGKDVEKLEPLCPVASIITITSGQRDCSRLLIGLPAS
ILAPFNPSLQTQQPHITSDSEKQQALFWLFLCMHLVTEAGNTPIILGIGSNPRLHTPTYF
FTHLSFVNICFITNLIPKLLCLTQMYFLISFANVDTFLLAIMALDHYVAICSALRYCSII
TPGSDTIATIMYTVVTSMLNPFIYSLMNKEVQEALRVMEALLQASKKRSPLGTEAIGFSF
TPFSKQTEVLQEKLGGPEAAQRLAAVTTITADANTTSASVTFHAPTHPPGLLPPGLHGHP
PTIPVELQSPSLSLPQPQEVSHRATPSTGSNLQLTTAVVMDMFTHVDIFKDLLDAGFKRK
ADLYIIVDGSKVKYVLHMCEQTRMHLGHLKELESLWDLLSTRGLVSNVHLESSVHLGPDV
FLGPLCPLGPYAHLEGHRRCTEYTQTGKEEGMETWDLRIQYKKSENSNQERTQRKYEKDG
LEIAKAAPKTSYSLFRKSQLAKYSKTKEGQELTLEKVLAALGATGWLVLGLLCQQAAFSQ
LPFFASGGGG

>gi568815593r:175859972_176068208|GENSCAN_predicted_CDS_3|1653_bp
atgaggtaccaccttacacccattaggatagctattatcaaaaaagaaaaacaaaagaaa
aaagcaaatgttggcaaggatgtggagaaattggagcccttgtgccccgttgcctccatc
atcaccatcacctctggccagcgtgactgcagtagactccttattggtctccctgcttcc
attcttgcccccttcaatccttctctccagacacagcagccccacatcaccagtgactca
gagaagcagcaggccctcttctggctcttcctgtgtatgcacttagtcactgaggctgga
aacacacccatcatcctgggcatcggctccaaccctcgcctgcacacccccacgtacttc
ttcacccatctctcctttgtcaacatctgcttcatcaccaacctgatccccaagctcctg
tgcctgactcagatgtacttcctcatctcctttgccaacgtggacacctttctgctggcc
atcatggcactggaccactatgtggccatctgcagcgccctgcggtactgctccatcatc
acccccggctctgacaccatagcaaccatcatgtacactgtggtgacctctatgctaaac
cccttcatctacagtctgatgaacaaggaggtccaggaggccctcagagtgatggaggct
ctgctccaggccagtaagaagcgttctcctttgggcactgaggccatcggcttcagcttc
acacccttttccaaacagacagaagtccttcaggagaaactaggtggcccagaggctgcc
cagagacttgctgctgttaccactattaccgccgatgccaacacaaccagtgcttctgtc
accttccatgcacccacccaccctccagggctccttccacctggcctccacgggcaccct
cctaccattcctgtcgagctgcagtctccatcgctgtcactgccacaaccacaggaagtg
agccacagagccacgccatctacaggctccaacctccagctcaccacagctgtggtcatg
gacatgttcacccatgtggacatcttcaaagacctgctggatgccggcttcaagaggaaa
gcagatttgtacatcatcgtggacgggagtaaagtcaagtacgttctgcatatgtgtgag
cagacccgcatgcacctggggcacctcaaggaactggagtccctctgggacctgttgtcc
acccggggcctggtgtccaacgtccaccttgagtccagtgtgcacttggggcccgacgtt
ttcctggggcctttgtgtccgctggggccttatgcccacctggaggggcacaggcgttgc
acagaatacacacagactggaaaggaagaaggaatggaaacgtgggacctacgtattcag
tataagaaaagtgaaaatagcaaccaggaaagaacacaaagaaagtacgagaaggatggg
ctagaaattgctaaggccgccccgaaaacatcctactcacttttcagaaaatcacaactt
gcaaagtacagcaaaaccaaggaaggccaagagcttaccttggagaaagttctcgcagcc
ctgggcgccaccggctggctggttctggggctgctttgccagcaggcagccttttctcag
ctgcctttcttcgcatcaggtggcggcggctga

>gi568815593r:175859972_176068208|GENSCAN_predicted_peptide_4|572_aa
MDKVLDTYNLTRLNQEEVEYLNRPTGSEIEAIINSLPTKKSPGPDGFTAEFYQRYKEELV
PFLLKLFQSIEKERILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAEILNKILAN
RIQQHIKKLIQHDQVGFIPGMQGWFNIRKSINVIQHINRTKDKNHMIISIDAEKAFGKIQ
QPFMLKTLNKLVIDGTYLKIIRAMYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFN
IVLEVLARAIRQEKEIKAQNLLKLISNSSKVSGFKINVQKSQAFLYTNNRQTESQIMSEL
PFTVASKGIKYLGIQLPRDVKDLLKENYKPLLNEIKEDTNKWKNIPCSWVERINIMKMAI
LPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKL
YYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKKWGKDSLYNKWCW
ENWLGICRKLKLDPFLTPFTKINSRCIKDLNVRPKTIKTLEENLGNTIQDIGMGKDFLSK
TPKAMATKAKIDKWDLIELKSSFCTAKKLPSE

>gi568815593r:175859972_176068208|GENSCAN_predicted_CDS_4|1719_bp
atggataaagtccttgatacatacaacctcacaagactaaaccaggaggaagttgaatat
ctgaacagaccaacaggctctgaaattgaggcaataattaatagcttaccaaccaaaaaa
agtccaggaccagacggattcacagctgaattctaccagaggtacaaggaggagctggta
ccattccttctgaaactattccaatcaatagaaaaagagagaatcctccctaattcattt
tatgaggccagcatcatcctgataccaaagcctggcagagacacaacaaaaaaagagaat
tttagacccatatccctgatgaacatcgatgcagaaatcctcaataaaatactggcaaac
cgaatccagcagcacatcaaaaagcttatccaacacgatcaagtgggcttcatccctggg
atgcaaggctggttcaacatacgcaaatcaataaatgtaatccagcatataaacagaacc
aaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttggcaaaattcaa
cagcccttcatgctaaaaactctcaataaattagttattgatgggacgtatctcaaaata
ataagagctatgtatgacaaacccacagccaatatcatactgaatgggcaaaaactggaa
gcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctcttcaac
atagtgttggaagttctggccagggcaatcaggcaggagaaggaaataaaggcccaaaat
ctccttaagctgataagtaactccagcaaagtctcaggattcaaaatcaatgtacaaaaa
tcacaagcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactc
ccattcacagttgcttcaaagggaataaaatacctaggaatccaacttccaagggatgtg
aaggatctcctcaaggagaactacaaaccactgctcaatgaaataaaagaggatacgaac
aaatggaagaacattccatgctcatgggtagaaagaatcaatatcatgaaaatggccata
ctgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttc
actgaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcattgcc
aagtcaatcctaagccaaaagaacaaagctggaggcatcacgcttcctgacttcaaacta
tactacaaggctacagtaaccaaaacggcatggtactggtaccaaaacagagatatagac
caatggaacagaacagagccctcagaaataatgccacatatctacaactatctgatcttt
gacaaacctgacaaaaacaagaaatggggaaaggattccctatataataaatggtgctgg
gaaaactggctaggcatatgtagaaagctgaaactggatcccttccttacaccttttaca
aaaattaattcaagatgcattaaagacttaaatgttagacctaaaaccataaaaacccta
gaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcctgtctaaa
acaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattgaactaaag
agctccttctgcacagcaaaaaaactaccatcagagtga

>gi568815593r:175859972_176068208|GENSCAN_predicted_peptide_5|185_aa
MRNEKFTIRSLTWIVSAPALQAALHFRGFALDSALWIFRFGTPNPCRRGLGSPGPPAPAA
PKAEELLQGAATLAASDLSDLVSLAKPPGSRKPQRDLVLAWAPRGHRSGFPDEPGFGADA
LALGAAWLVSGSGRRLESHSLLPPPAPTAARARTRSLQLQLRHWRGMAELPLDGVRVTEC
TAYLV

>gi568815593r:175859972_176068208|GENSCAN_predicted_CDS_5|558_bp
atgagaaatgagaaattcactatcagaagtcttacctggattgtctctgctcctgcgctc
caggcagcgctccacttccgcggcttcgcccttgacagcgccctgtggatcttccgattc
ggtaccccgaacccctgtagacgtggcctagggagccccggaccgccggcccctgcggct
cccaaagccgaagaacttcttcaaggtgcagcgacactggcggcctccgacctctcagac
ctagtgagcctcgcaaagccgcccggctcccggaagccgcagagagatctggtgctggca
tgggcaccccgcggccaccggagtggcttcccggatgagcctggcttcggcgctgacgct
ctggccctgggggctgcctggctggtgtcaggtagcggaagacgcctggagagtcactcg
ctccttcccccacccgcccccaccgctgctcgtgccaggacgcgcagtttgcagttgcag
ctcaggcactggcgcgggatggcggagcttcccttggatggcgtcagggtcaccgagtgc
acagcctacctggtctga