GENSCAN 1.0	Date run:  8-Nov-116	Time: 10:04:38

Sequence gi568815593f:172883861_173120328 : 236468 bp : 45.98% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3049   3056    8  0  2   70  109     4 0.369   0.91
 1.02 Intr +   4839   4900   62  0  2  143   64   117 0.085  13.18
 1.03 Intr +  13142  13214   73  0  1   81   84    84 0.051   5.76
 1.04 Intr +  17041  17230  190  1  1   91   72    95 0.256   7.79
 1.05 Intr +  22262  22320   59  1  2  126   69   -12 0.190  -1.62
 1.06 Intr +  25807  25901   95  1  2   70   65   219 0.847  17.41
 1.07 Intr +  30854  30978  125  0  2   98   86   233 0.998  24.40
 1.08 Intr +  31658  31830  173  1  2   81   66    71 0.783   2.94
 1.09 Intr +  36504  36624  121  0  1   76   60    58 0.614   2.30
 1.10 Intr +  40145  40249  105  1  0  104   99   124 0.833  15.51
 1.11 Intr +  42649  42709   61  0  1   98   50    48 0.789   0.31
 1.12 Intr +  48576  48676  101  1  2  127   91   255 0.999  29.53
 1.13 Intr +  51328  51450  123  0  0  101  113   282 0.985  32.78
 1.14 Term +  66849  66956  108  2  0  128   48   170 0.778  15.51
 1.15 PlyA +  69734  69739    6                               1.05

 2.00 Prom +  72154  72193   40                              -6.16
 2.01 Init +  76014  76181  168  2  0  104   98   311 0.788  33.23
 2.02 Intr +  84599  84739  141  1  0   87   86   225 0.998  22.75
 2.03 Term +  85553  85681  129  1  0   99   36   190 0.999  13.08
 2.04 PlyA +  85837  85842    6                               1.05

 3.00 Prom +  89478  89517   40                              -7.16
 3.01 Init +  91651  92225  575  0  2  103   70   554 0.602  49.69
 3.02 Term +  92315  92519  205  2  1  -15   39   192 0.629   0.84
 3.03 PlyA +  92813  92818    6                               1.05

 4.00 Prom +  96839  96878   40                              -4.46
 4.01 Init + 100001 100104  104  1  2  120   98    88 0.976  12.93
 4.02 Term + 103190 103343  154  2  1   41   43   102 0.105  -1.61
 4.03 PlyA + 105191 105196    6                               1.05

 5.03 PlyA - 105653 105648    6                               1.05
 5.02 Term - 150491 150349  143  0  2   61   41    79 0.574  -1.41
 5.01 Init - 152661 152544  118  0  1   82   49    93 0.795   5.22
 5.00 Prom - 165692 165653   40                              -2.56

 6.06 PlyA - 165701 165696    6                               1.05
 6.05 Term - 171979 171875  105  1  0   43   42   160 0.856   5.31
 6.04 Intr - 173001 172835  167  1  2  127   23    59 0.718   2.98
 6.03 Intr - 195227 195133   95  1  2   52   86    77 0.320   3.51
 6.02 Intr - 202045 201909  137  1  2   24   91   132 0.351   6.47
 6.01 Init - 204350 204333   18  2  0   62   89    31 0.405   0.65
 6.00 Prom - 204687 204648   40                              -9.85

 7.00 Prom + 204899 204938   40                              -4.96
 7.01 Init + 206464 207541 1078  0  1   69   67   688 0.091  59.36
 7.02 Intr + 224764 224958  195  2  0   33   95   129 0.942   7.49
 7.03 Intr + 226662 226851  190  1  1   92   99    86 0.425   8.74
 7.04 Term + 228446 228545  100  2  1   79   38    84 0.440   0.10
 7.05 PlyA + 230203 230208    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +   4839   4908   70  0  1  143   42   126 0.914  10.91
S.002 Term +  42852  43024  173  1  2   75   44   128 0.834   5.09
S.003 Init + 223077 223125   49  2  1   77   58    66 0.879   1.61


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:172883861_173120328|GENSCAN_predicted_peptide_1|467_aa
MDRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVYRSCPKGLRRMS
PKTYRAIERRKHHIFGVFQLSEACGPQEALQVWEQLKVTVLVFWVAGPLWQLLCSWWPLI
GANTTSKVKRSVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHI
DNSMKIPLNNGAGCRFEGQFSINKNQELQILSQVGERSALGRAEAPGGSWQGFAQHVPAF
LEARYCHSGASQQRCEAAPFDRKLTSSQMSEFACFEQQRQPHQRPHGDLVSSASPAGGGQ
DGVPGNFHVSTHSATAQPQNPDMTHVIHKLSFGDTLQVQNIHGAFNALGGADRLTSNPLA
SHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYT
ERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKMH

>gi568815593f:172883861_173120328|GENSCAN_predicted_CDS_1|1404_bp
atggacaggtttgacatctacaggaaggtgcccaaggaccttacgcagccaacgtacacc
ggggccattatctccatctgctgctgcctcttcatcctcttcctcttcctctcggagctc
accggatttataacgacagaagtgtataggagttgcccgaagggcctccgcaggatgagc
cctaagacttacagagcaatcgagaggagaaagcatcacatctttggggtcttccagttg
tcagaagcttgtggcccccaggaagccctacaggtttgggaacaactgaaggtcacagtt
ctcgtcttctgggtggctggccctctgtggcagctcctttgctcttggtggcctctgatt
ggggccaacactacaagcaaggtcaagcgcagtgtgaacgagctctatgtcgatgaccca
gacaaggacagcggtggcaagatcgacgtcagtctgaacatcagtttacccaatctgcac
tgcgagttggttgggcttgacattcaggatgagatgggcaggcacgaagtgggccacatc
gacaactccatgaagatcccgctgaacaatggggcaggctgccgcttcgaggggcagttc
agcatcaacaagaaccaggagcttcagatcctaagtcaagtgggtgaacgcagtgccctt
gggagggccgaggcacccggtggcagctggcagggttttgctcagcacgtgccggccttc
ctcgaagctcggtactgtcacagtggagcctctcaacaacgctgtgaggcagcaccattt
gacaggaagttgaccagcagccagatgtcagagtttgcgtgttttgagcagcagcggcag
cctcaccagagaccccacggtgacctcgtttcatcagccagccccgcaggaggaggacag
gatggggtccccggcaacttccacgtgtccacacacagtgccacagcccagccacagaac
ccagacatgacgcatgtcatccacaagctctcctttggggacacgctacaggtccagaac
atccacggagctttcaatgctctcgggggagcagacagactcacctccaaccccctggcc
tcccacgactacatcctgaagattgtgcccacggtttatgaggacaagagtggcaagcag
cggtactcctaccagtacacggtggccaacaaggaatacgtcgcctacagccacacgggc
cgcatcatccctgcaatctggttccgctacgacctcagccccatcacggtcaagtacaca
gagagacggcagccgctgtacagattcatcaccacgatctgtgccatcattggcgggacc
ttcaccgtcgccggcatcctggactcatgcatcttcacagcctctgaggcctggaagaag
atccagctgggcaagatgcattga

>gi568815593f:172883861_173120328|GENSCAN_predicted_peptide_2|145_aa
MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG
HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE
RKAKSRQVGKEKGKYKEELIEKMQE

>gi568815593f:172883861_173120328|GENSCAN_predicted_CDS_2|438_bp
atgaagttcaatcccttcgttacctcggaccgcagtaaaaaccgcaaacgtcacttcaat
gccccctcacacgtgcgcaggaagatcatgtcatccccgctctccaaggagctgcggcag
aagtacaatgtccgctccatgcccatccgcaaggacgacgaggtccaggtagttcgagga
cactacaaaggtcagcaaattggcaaggtagtccaggtgtacagaaagaaatatgtcatc
tacatcgagcgggtgcagcgtgagaaggccaacggcacaactgtccacgtgggcattcac
ccaagcaaggtggttatcaccaggctaaaactggacaaggatcggaaaaaaattcttgaa
cgcaaagccaagtctcgacaagttggaaaagagaaaggcaaatataaagaagaacttatt
gagaaaatgcaggaataa

>gi568815593f:172883861_173120328|GENSCAN_predicted_peptide_3|259_aa
MSGFSTEERATPFSLKYRVFLKNEKGQYMSPFQDIPIYADKDVFHVVVEVPLWSNAKMEV
ATKDPLNPIKQDVKKRKLRYVANLFPYKGYVWNYGAIPQTWEDPGHNDKHTGCCGDNDPI
DVCEIGSKVCARGEIIGVKVLGILAMIDEGETDWKVIAINMDDPDAGNYTDISDVKRLKP
GYLEATVDWFRSTHDHWKALVTKKMNGKGISCMNKTVSESLFKCDPDAARAIVDALPPPC
ESACTVPTDVDTWFHHQKN

>gi568815593f:172883861_173120328|GENSCAN_predicted_CDS_3|780_bp
atgagcggcttcagcactgaggagcgcgccacgcccttctccctgaagtaccgagtcttc
ctcaaaaatgagaaaggacaatatatgtctccatttcaagatattccaatttatgcagat
aaggatgtgttccacgtggtagttgaagtaccactgtggtctaatgcaaaaatggaggtt
gctacaaaggaccctttaaaccccattaaacaagatgtgaaaaaaagaaaacttcgctat
gttgcgaatttgttcccgtataaaggatatgtctggaactatggtgccatccctcagact
tgggaagacccagggcacaatgataaacatactggctgttgtggtgacaatgacccaatt
gatgtgtgtgaaattggaagcaaggtatgtgcaagaggtgaaataattggtgtgaaagtt
ctaggcatattggctatgattgacgaaggggaaaccgactggaaagtcattgccattaat
atggatgatcctgatgcaggcaattatactgatatcagtgatgtcaaacggctgaaaccc
ggctacttagaggctactgtggactggtttagaagcactcatgaccattggaaagcatta
gtgactaagaaaatgaatggaaaaggaatcagctgcatgaacaaaactgtgtctgagagc
ctgttcaagtgtgatcctgatgctgccagagccattgtggatgctttaccaccaccctgt
gaatctgcctgcacagtaccaacagacgtggatacgtggttccatcaccagaagaactaa

>gi568815593f:172883861_173120328|GENSCAN_predicted_peptide_4|85_aa
MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGARITGMSHHARLEDTFFKQKEEQKK
LEELKVKAMGKGPLVIGGIKKSGKK

>gi568815593f:172883861_173120328|GENSCAN_predicted_CDS_4|258_bp
atggcgtatcacggcctcactgtgcctctcattgtgatgagcgtgttctggggcttcgtc
ggcttcttggtgccttggttcatccctaagggtcctaaccggggtgctagaattacaggc
atgagccaccacgcccggctggaagatacattttttaaacaaaaagaggagcagaagaaa
ctggaggagctgaaagtgaaggccatggggaaggggcccctggtcataggtggaattaag
aaatccggcaaaaaataa

>gi568815593f:172883861_173120328|GENSCAN_predicted_peptide_5|86_aa
MTFAWKGSGAQEHFRYPLNGLNGGPSSLGPDKHWMECGNGRQKVNIEKVNQANTLKCTDA
QQNMKHRIINLVQVWPGFAGLWQKVQ

>gi568815593f:172883861_173120328|GENSCAN_predicted_CDS_5|261_bp
atgacgttcgcctggaagggctctggagcgcaggaacattttcggtatcctctgaacggg
ctaaatggaggtccttccagtctgggccctgacaaacactggatggagtgtggcaacgga
aggcaaaaagttaacatcgagaaagttaaccaagccaacactttaaaatgcacagatgct
caacaaaatatgaaacacaggataatcaacttggtgcaagtttggccaggttttgcaggg
ctgtggcaaaaggtccagtaa

>gi568815593f:172883861_173120328|GENSCAN_predicted_peptide_6|173_aa
MEEELQTPFLLVGTQTDLRDDPSTIEKLAKNKQKPITPETAKKLTHDLKAISLSLCDLMP
SSYNWYVVIIIALILSPDSYEKEGRLPAAAAPGSEAAGKGRAARQDGRPALPIPGLAYCP
PASPIYRRPALLCNRPGPGHGFRGTGINQTACTFEERDPYTTVQPECHYYRSA

>gi568815593f:172883861_173120328|GENSCAN_predicted_CDS_6|522_bp
atggaagaagagctgcagactcctttcttgcttgttgggacccaaactgatctcagagat
gacccctctactattgagaaacttgccaagaacaaacagaagcctatcactccagagact
gctaaaaagctgacccatgacctgaaggccatcagtctctccttatgtgacctcatgccg
tcgtcctacaactggtatgtagtcataatcattgccctaattctctcccctgattcctat
gagaaagaaggccgactgccggcagcagcggccccgggctcggaggcagcggggaagggc
cgggcggcccggcaggacggacgcccggcgctgcccatccccggcctagcctactgcccg
cccgcgagtcccatctaccgccgccccgcgcttttatgtaaccgtcccgggccggggcac
ggattccgaggcacagggatcaatcagactgcgtgcacctttgaagagagagacccgtat
acgactgtacaaccagaatgccactactacagaagcgcctag

>gi568815593f:172883861_173120328|GENSCAN_predicted_peptide_7|520_aa
MNYQQNPRDNFLSLEDCKDIENLESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCD
IWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPL
PSSFPGKKITSRAAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFH
VECKDYVKKAKVKINPVQQSRPLLSQIHTDAAKENTCYCGAVAKRQEKKGMEPLQGHATP
ALPFKETQELLLSPLPQEGPGSLAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQ
PTKCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPG
YENDSVEDLKEVTSISSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRDTLPSNMYQKN
GLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRK
EKNKLASRACRLKKKAQYEANKVKLWGLNTEYGKPKVLRS

>gi568815593f:172883861_173120328|GENSCAN_predicted_CDS_7|1563_bp
atgaactaccaacagaatcctagagacaactttctttctttggaggactgcaaagacatt
gaaaatctggagtctttcacagatgtcctggataatgagggtgctttaacctcaaactgg
gaacagtgggatacatactgtgaagacctaacgaaatataccaaactaaccagctgtgac
atctggggaacaaaagaagtggattacttgggtcttgatgacttttctagtccttaccaa
gatgaagaggttataagtaaaactccaactttagctcaacttaatagtgaggactcacag
tctgtttctgattccctttattaccccgattcacttttcagtgtcaaacaaaatccctta
ccctcttcattccctggtaaaaagatcacaagcagagcagctgctcctgtgtgttcttct
aagactctgcaggctgaggtccctttgtcagactgtgtccaaaaagcaagtaaacccact
tcaagcacacaaatcatggtgaagaccaacatgtatcataatgaaaaggtgaactttcat
gttgaatgtaaagactatgtaaaaaaggcaaaggtaaagatcaacccagtgcaacagagc
cggcccttgttgagccagattcacacagatgcagcaaaggagaacacctgctactgtggt
gcagtggcaaagagacaagagaaaaaagggatggagcctcttcaaggtcatgccactccc
gctttgccttttaaagaaacccaggaactattactaagtcccctgccccaggaaggtcct
gggtcacttgcagcaggagagagcagcagtctttctgccagtacatcagtctcagattca
tcccagaaaaaagaagagcacaattattctctttttgtctccgacaacttgggtgaacag
ccaactaaatgcagtcctgaagaagatgaggaggacgaggaggatgttgatgatgaggac
catgatgaaggattcggcagtgagcatgaactgtctgaaaatgaggaggaggaagaagag
gaagaggattatgaagatgacaaggatgatgatattagtgatactttctctgaaccaggc
tatgaaaatgattctgtagaagacctgaaggaggtgacttcaatatcttcacggaagaga
ggtaaaagaagatacttctgggagtatagtgaacaacttacaccatcacagcaagagagg
atgctgagaccatctgagtggaaccgagatactttgccaagtaatatgtatcagaaaaat
ggcttacatcatggaaaatatgcagtaaagaagtcacggagaactgatgtagaagacctg
actccaaatcctaaaaaactcctccagataggcaatgaacttcggaaactgaataaggtg
attagtgacctgactccagtcagtgagcttcccttaacagcccgaccaaggtcaaggaag
gaaaaaaataagctggcttccagagcttgtcggttaaagaagaaagcccagtatgaagct
aataaagtgaaattatggggcctcaacacagaatatggtaaacctaaagttttaagaagt
tga