GENSCAN 1.0 Date run: 7-Nov-116 Time: 22:57:14 Sequence gi568815593r:44204998_44488682 : 283685 bp : 35.46% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Sngl + 7358 7909 552 1 0 78 39 245 0.681 14.46 1.02 PlyA + 10934 10939 6 1.05 2.00 Prom + 14634 14673 40 -3.15 2.01 Init + 34446 34531 86 2 2 52 105 78 0.747 6.24 2.02 Intr + 52757 52906 150 2 0 82 106 83 0.873 7.86 2.03 Intr + 57624 57653 30 0 0 91 87 57 0.141 2.23 2.04 Term + 73530 73728 199 0 1 40 46 143 0.943 1.19 2.05 PlyA + 73955 73960 6 1.05 3.05 PlyA - 76623 76618 6 1.05 3.04 Term - 95786 95664 123 2 0 12 48 173 0.707 3.10 3.03 Intr - 105533 105430 104 0 2 49 89 150 0.946 10.17 3.02 Intr - 183500 183361 140 1 2 122 98 153 0.925 18.89 3.01 Init - 183677 183565 113 2 2 73 33 167 0.954 7.44 3.00 Prom - 211022 210983 40 -2.45 4.05 PlyA - 211138 211133 6 1.05 4.04 Term - 220567 220483 85 0 1 67 49 86 0.185 -1.25 4.03 Intr - 238442 238318 125 2 2 40 110 95 0.041 5.36 4.02 Intr - 247964 247896 69 2 0 70 94 44 0.022 1.66 4.01 Init - 262892 262842 51 2 0 31 73 200 0.435 12.01 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815593r:44204998_44488682|GENSCAN_predicted_peptide_1|183_aa MVPCTPVMAKRGQHRAQSIASEGASPKLWWLTHGVGPAGAQKSRIDVWEPPSRFQRIHGN AWMARQKFATRVEPSQRMSARALQKRNVELKSPHRVPNGAMLSGAVRRGLLSSRPQGSRS TNILPHAPEKVADTQLQLIKPVRRGAVLSKTTDVELLKSVGAHLSHQSDLDLRLGIKKII LEI >gi568815593r:44204998_44488682|GENSCAN_predicted_CDS_1|552_bp atggtgccctgcaccccagtcatggctaaaaggggccaacatagagctcagtccattgct tcagaaggtgccagtcccaagctttggtggcttacacatggtgttgggcctgcaggtgca cagaagtcaagaattgatgtttgggaacctccatctagatttcagaggattcatggaaat gcctggatggccaggcagaagtttgctacaagggtggagccctcacaaagaatgtctgct agggcactgcagaagagaaatgtggaactgaagtccccacacagagttcccaatggggca atgcttagcggagctgtgaggagagggctattgtcctccagaccccagggtagtagatct actaacatcttgccccatgcacctgaaaaagtagcagacactcaactccagctcataaaa ccagtcagaaggggggctgtactctctaaaaccacagacgtggagctgctcaagtctgtg ggagcccacctttcacatcagtctgacctagatttgagacttggaatcaaaaagatcatt ttggaaatttaa >gi568815593r:44204998_44488682|GENSCAN_predicted_peptide_2|154_aa MKCGHPEKKNGITAIVQGIREITLNSDRRLVGSAEKHNPVLTGDFFERVSAAFIWGIENK GNRTYAKGPHFPLRVINVKRCVLRLLPRFNSVSINNVLDYSNPNCSKKSFQAHWIKLTLP LWLAATFTVQDMVSDCSVATEFVAIVATVFHPLS >gi568815593r:44204998_44488682|GENSCAN_predicted_CDS_2|465_bp atgaaatgtgggcaccctgaaaaaaagaacgggataacagcaattgttcagggaataaga gagataaccttaaactctgaccgccgattggtgggttcagctgaaaagcataatcctgtc ctcactggagacttttttgaaagggtttctgctgcatttatatgggggattgaaaataag ggaaatcgaacatatgccaagggaccacattttcccttaagggtaataaatgtaaagagg tgcgtgcttcgccttctgccacgattcaattctgtaagtatcaataatgtacttgactat tcgaatcccaattgctccaagaagtctttccaagctcactggatcaaattaactctccct ctttggcttgctgccacattcacagtccaggatatggtcagcgactgttcagtagcaaca gagtttgttgctattgttgctactgtgttccacccactgtcctaa >gi568815593r:44204998_44488682|GENSCAN_predicted_peptide_3|159_aa MDTDTLCLSLSPPARLLLLLLFVAVLGVFRPCHLPSPCAGRHVRSYNHLQGDVRWRKLFS FTKYFLKIEKNGKVSGTKKENCPYSILEITSVEIGVVAVKAINSNYYLAMNKKGKLYGSR GKVKILAAHTTATSEEEYTKETAVLQVQKPNGCLLHLIK >gi568815593r:44204998_44488682|GENSCAN_predicted_CDS_3|480_bp atggatactgacacattgtgcctcagcctttccccacctgcccggctgctgctgctgctg ctttttgttgctgttcttggtgtcttccgtccctgtcacctgccaagcccttgcgcggga aggcatgtgcggagctacaatcaccttcaaggagatgtccgctggagaaagctattctct ttcaccaagtactttctcaagattgagaagaacgggaaggtcagcgggaccaagaaggag aactgcccgtacagcatcctggagataacatcagtagaaatcggagttgttgccgtcaaa gccattaacagcaactattacttagccatgaacaagaaggggaaactctatggctcaaga ggcaaggtgaagattttggcagcccacacaaccgcaactagtgaagaagagtacaccaag gagacagcagtgctgcaggtgcaaaaaccaaatggttgtttgctacatcttattaaatga >gi568815593r:44204998_44488682|GENSCAN_predicted_peptide_4|109_aa MNSAVMLLLLLLLLLAYDNITALETMNGILGQLTKSQPRKITALREKECMSCVVQTTREE EAVGGLTSLGKGMHYLMHESYRYCPLSTSDKQPNPGRSDQESKALEIIS >gi568815593r:44204998_44488682|GENSCAN_predicted_CDS_4|330_bp atgaactctgctgtgatgctgctgctgctgctgctgctgctgctggcatatgataacatc accgctttggagacaatgaatgggatcctgggacaactgacaaaaagccagccaagaaag ataactgccttaagggagaaagaatgcatgagctgtgtggtccagactaccagagaagaa gaggctgtgggaggacttacaagtctggggaaaggaatgcattatctgatgcatgagagt tacaggtactgccctttaagcaccagtgacaagcagcccaatccagggagaagtgaccaa gagagcaaagcacttgaaatcatttcttaa