Result of FASTA (omim) for pF1KE1779
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1779, 288 aa
  1>>>pF1KE1779     288 - 288 aa - 288 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8898+/-0.000417; mu= 12.6359+/- 0.025
 mean_var=143.9284+/-29.498, 0's: 0 Z-trim(114.3): 108  B-trim: 592 in 1/56
 Lambda= 0.106906
 statistics sampled from 24912 (25071) to 24912 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.272), width:  16
 Scan time:  4.180

The best scores are:                                      opt bits E(92320)
NP_005182 (OMIM: 112203) T-lymphocyte activation a ( 288) 1950 312.7 5.6e-85
NP_008820 (OMIM: 601020) T-lymphocyte activation a ( 323)  277 54.7 2.8e-07
NP_787058 (OMIM: 601020) T-lymphocyte activation a ( 329)  276 54.6 3.2e-07
NP_795711 (OMIM: 601020) T-lymphocyte activation a ( 275)  247 50.0 6.4e-06
NP_001193854 (OMIM: 601020) T-lymphocyte activatio ( 247)  226 46.7 5.6e-05
NP_079516 (OMIM: 605715) CD276 antigen isoform b p ( 316)  215 45.2 0.00021
NP_001316557 (OMIM: 605715) CD276 antigen isoform  ( 316)  215 45.2 0.00021
XP_016866546 (OMIM: 606000,612387) butyrophilin-li ( 482)  208 44.3 0.00059
NP_001291490 (OMIM: 606000,612387) butyrophilin-li ( 482)  208 44.3 0.00059
NP_001723 (OMIM: 601610) butyrophilin subfamily 1  ( 526)  197 42.7   0.002
XP_005254757 (OMIM: 605715) CD276 antigen isoform  ( 534)  197 42.7   0.002
NP_001019907 (OMIM: 605715) CD276 antigen isoform  ( 534)  197 42.7   0.002
XP_016878127 (OMIM: 605715) CD276 antigen isoform  ( 534)  197 42.7   0.002
XP_011520397 (OMIM: 605715) CD276 antigen isoform  ( 534)  197 42.7   0.002
NP_054862 (OMIM: 605402) programmed cell death 1 l ( 290)  190 41.3  0.0029
NP_001352688 (OMIM: 605717) ICOS ligand isoform e  ( 275)  188 40.9  0.0035
NP_001300958 (OMIM: 605402) programmed cell death  ( 245)  187 40.7  0.0036
NP_056074 (OMIM: 605717) ICOS ligand isoform a pre ( 302)  188 41.0  0.0037
XP_011527817 (OMIM: 605717) ICOS ligand isoform X3 ( 304)  188 41.0  0.0037
XP_011527818 (OMIM: 605717) ICOS ligand isoform X4 ( 334)  188 41.0  0.0039
XP_011527816 (OMIM: 605717) ICOS ligand isoform X2 ( 361)  188 41.1  0.0041


>>NP_005182 (OMIM: 112203) T-lymphocyte activation antig  (288 aa)
 initn: 1950 init1: 1950 opt: 1950  Z-score: 1647.2  bits: 312.7 E(92320): 5.6e-85
Smith-Waterman score: 1950; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KE1 MGHTRRQGTSPSKCPYLNFFQLLVLAGLSHFCSGVIHVTKEVKEVATLSCGHNVSVEELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGHTRRQGTSPSKCPYLNFFQLLVLAGLSHFCSGVIHVTKEVKEVATLSCGHNVSVEELA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNTTKQEHFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNTTKQEHFP
              190       200       210       220       230       240

              250       260       270       280        
pF1KE1 DNLLPSWAITLISVNGIFVICCLTYCFAPRCRERRRNERLRRESVRPV
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DNLLPSWAITLISVNGIFVICCLTYCFAPRCRERRRNERLRRESVRPV
              250       260       270       280        

>>NP_008820 (OMIM: 601020) T-lymphocyte activation antig  (323 aa)
 initn: 144 init1:  54 opt: 277  Z-score: 252.2  bits: 54.7 E(92320): 2.8e-07
Smith-Waterman score: 277; 26.0% identity (57.4% similar) in 277 aa overlap (24-279:6-271)

               10        20        30          40        50        
pF1KE1 MGHTRRQGTSPSKCPYLNFFQLLVLAGLSHFCSGV--IHVTKEVKEVATLSCGH-NVSVE
                              .:  .. . ::.  ...    .:.: : :   : . .
NP_008                   MGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQ
                                 10        20        30        40  

        60        70         80           90       100       110   
pF1KE1 ELAQTRIYWQKEKKMVLT-MMSGDM---NIWPEYKNRTIFDITNNLSIVILALRPSDEGT
        :..  ..:: ....::. .. :     ..  .: .:: :: ... .. .  :. .:.: 
NP_008 SLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-SDSWTLRLHNLQIKDKGL
             50        60        70        80         90       100 

           120       130       140       150       160             
pF1KE1 YECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRII-----CSTSGGF
       :.:.. . .  .. : :  .  ::: :.:  : :    .: ::: . .     ::.  :.
NP_008 YQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEI----VPISNITENVYINLTCSSIHGY
             110       120       130           140       150       

      170           180        190       200          210       220
pF1KE1 PEPH-LSWL---ENGE-ELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKY
       :::. .: :   .:.  : ..:    :::  :::: :: .:.    ..:.: ...:... 
NP_008 PEPKKMSVLLRTKNSTIEYDGIMQK-SQDNVTELYDVSISLSVSFPDVTSNMTIFCILET
       160       170       180        190       200       210      

               230       240       250       260       270         
pF1KE1 GHLRV-NQTFNWNTTKQEHFPDNLLPSWAITLISVNGIFVICCLTYCFAPRCRERRRNER
        . :. .. :. .    .  ::.. : :   . .:    .:: ...:.     ....  :
NP_008 DKTRLLSSPFSIELEDPQPPPDHI-P-W---ITAVLPTVIICVMVFCLILWKWKKKKRPR
        220       230       240            250       260       270 

     280                                                   
pF1KE1 LRRESVRPV                                           
                                                           
NP_008 NSYKCGTNTMEREESEQTKKREKIHIPERSDEAQRVFKSSKTSSCDKSDTCF
             280       290       300       310       320   

>>NP_787058 (OMIM: 601020) T-lymphocyte activation antig  (329 aa)
 initn: 144 init1:  54 opt: 276  Z-score: 251.2  bits: 54.6 E(92320): 3.2e-07
Smith-Waterman score: 276; 25.6% identity (57.4% similar) in 277 aa overlap (24-279:12-277)

               10        20        30          40        50        
pF1KE1 MGHTRRQGTSPSKCPYLNFFQLLVLAGLSHFCSGV--IHVTKEVKEVATLSCGH-NVSVE
                              .:  .. . ::.  ...    .:.: : :   : . .
NP_787             MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQ
                           10        20        30        40        

        60        70         80           90       100       110   
pF1KE1 ELAQTRIYWQKEKKMVLT-MMSGDM---NIWPEYKNRTIFDITNNLSIVILALRPSDEGT
        :..  ..:: ....::. .. :     ..  .: .:: :: ... .. .  :. .:.: 
NP_787 SLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-SDSWTLRLHNLQIKDKGL
       50        60        70        80         90       100       

           120       130       140       150       160             
pF1KE1 YECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRII-----CSTSGGF
       :.:.. . .  .. : :  .  ::: :.:  : :    .: ::: . .     ::.  :.
NP_787 YQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEI----VPISNITENVYINLTCSSIHGY
       110       120       130       140           150       160   

      170           180        190       200          210       220
pF1KE1 PEPH-LSWL---ENGE-ELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKY
       :::. .: :   .:.  : ...    :::  :::: :: .:.    ..:.: ...:... 
NP_787 PEPKKMSVLLRTKNSTIEYDGVMQK-SQDNVTELYDVSISLSVSFPDVTSNMTIFCILET
           170       180        190       200       210       220  

               230       240       250       260       270         
pF1KE1 GHLRV-NQTFNWNTTKQEHFPDNLLPSWAITLISVNGIFVICCLTYCFAPRCRERRRNER
        . :. .. :. .    .  ::.. : :   . .:    .:: ...:.     ....  :
NP_787 DKTRLLSSPFSIELEDPQPPPDHI-P-W---ITAVLPTVIICVMVFCLILWKWKKKKRPR
            230       240            250       260       270       

     280                                                   
pF1KE1 LRRESVRPV                                           
                                                           
NP_787 NSYKCGTNTMEREESEQTKKREKIHIPERSDEAQRVFKSSKTSSCDKSDTCF
       280       290       300       310       320         

>>NP_795711 (OMIM: 601020) T-lymphocyte activation antig  (275 aa)
 initn: 144 init1:  54 opt: 247  Z-score: 227.9  bits: 50.0 E(92320): 6.4e-06
Smith-Waterman score: 247; 27.7% identity (59.6% similar) in 235 aa overlap (24-237:6-234)

               10        20        30          40        50        
pF1KE1 MGHTRRQGTSPSKCPYLNFFQLLVLAGLSHFCSGV--IHVTKEVKEVATLSCGH-NVSVE
                              .:  .. . ::.  ...    .:.: : :   : . .
NP_795                   MGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQ
                                 10        20        30        40  

        60        70         80           90       100       110   
pF1KE1 ELAQTRIYWQKEKKMVLT-MMSGDM---NIWPEYKNRTIFDITNNLSIVILALRPSDEGT
        :..  ..:: ....::. .. :     ..  .: .:: :: ... .. .  :. .:.: 
NP_795 SLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-SDSWTLRLHNLQIKDKGL
             50        60        70        80         90       100 

           120       130       140       150       160             
pF1KE1 YECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRII-----CSTSGGF
       :.:.. . .  .. : :  .  ::: :.:  : :    .: ::: . .     ::.  :.
NP_795 YQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEI----VPISNITENVYINLTCSSIHGY
             110       120       130           140       150       

      170           180        190       200          210       220
pF1KE1 PEPH-LSWL---ENGE-ELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKY
       :::. .: :   .:.  : ..:    :::  :::: :: .:.    ..:.: ...:... 
NP_795 PEPKKMSVLLRTKNSTIEYDGIMQK-SQDNVTELYDVSISLSVSFPDVTSNMTIFCILET
       160       170       180        190       200       210      

               230       240       250       260       270         
pF1KE1 GHLRV-NQTFNWNTTKQEHFPDNLLPSWAITLISVNGIFVICCLTYCFAPRCRERRRNER
        . :. .. :. .:. .:                                          
NP_795 DKTRLLSSPFSIGTNTMEREESEQTKKREKIHIPERSDEAQRVFKSSKTSSCDKSDTCF 
        220       230       240       250       260       270      

>>NP_001193854 (OMIM: 601020) T-lymphocyte activation an  (247 aa)
 initn:  89 init1:  54 opt: 226  Z-score: 211.0  bits: 46.7 E(92320): 5.6e-05
Smith-Waterman score: 226; 27.9% identity (57.4% similar) in 204 aa overlap (90-279:3-195)

      60        70        80        90       100       110         
pF1KE1 AQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVL
                                     :: :: ... .. .  :. .:.: :.:.. 
NP_001                             MGRTSFD-SDSWTLRLHNLQIKDKGLYQCIIH
                                            10        20        30 

     120       130       140       150       160            170    
pF1KE1 KYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRII-----CSTSGGFPEPH-L
       . .  .. : :  .  ::: :.:  : :    .: ::: . .     ::.  :.:::. .
NP_001 HKKPTGMIRIHQMNSELSVLANFSQPEI----VPISNITENVYINLTCSSIHGYPEPKKM
              40        50            60        70        80       

              180        190       200          210       220      
pF1KE1 SWL---ENGE-ELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRV-
       : :   .:.  : ..:    :::  :::: :: .:.    ..:.: ...:...  . :. 
NP_001 SVLLRTKNSTIEYDGIMQK-SQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLL
        90       100        110       120       130       140      

         230       240       250       260       270       280     
pF1KE1 NQTFNWNTTKQEHFPDNLLPSWAITLISVNGIFVICCLTYCFAPRCRERRRNERLRRESV
       .. :. .    .  ::.. : :   . .:    .:: ...:.     ....  :      
NP_001 SSPFSIELEDPQPPPDHI-P-W---ITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCG
        150       160            170       180       190       200 

                                                     
pF1KE1 RPV                                           
                                                     
NP_001 TNTMEREESEQTKKREKIHIPERSDEAQRVFKSSKTSSCDKSDTCF
             210       220       230       240       

>>NP_079516 (OMIM: 605715) CD276 antigen isoform b precu  (316 aa)
 initn:  87 init1:  63 opt: 215  Z-score: 200.6  bits: 45.2 E(92320): 0.00021
Smith-Waterman score: 215; 28.5% identity (53.6% similar) in 239 aa overlap (46-267:46-271)

          20        30        40        50           60          70
pF1KE1 YLNFFQLLVLAGLSHFCSGVIHVTKEVKEVATLSCGHNVSVEE---LAQTRIYWQ--KEK
                                     ::: :  . : :    :::  . ::    :
NP_079 AALGALWFCLTGALEVQVPEDPVVALVGTDATLCC--SFSPEPGFSLAQLNLIWQLTDTK
          20        30        40        50          60        70   

               80        90           100       110       120      
pF1KE1 KMVLTMMSGDMNIWPEYKNRTIF--DIT--NNLSIVILALRPSDEGTYECVVLKYEKDAF
       ..: ..  :. .    : ::: .  :.   .: :. .  .: .:::.. : :      ..
NP_079 QLVHSFAEGQ-DQGSAYANRTALFPDLLAQGNASLRLQRVRVADEGSFTCFV------SI
            80         90       100       110       120            

        130       140       150            160       170        180
pF1KE1 KREHLAEVTLSVKADFPTPSISDFEIPTSNIR-----RIICSTSGGFPEPHLSWLEN-GE
       .    : :.:.: : .  ::.. .: :....:      : ::.  :.:: .. : .. : 
NP_079 RDFGSAAVSLQVAAPYSKPSMT-LE-PNKDLRPGDTVTITCSSYRGYPEAEVFWQDGQGV
        130       140        150        160       170       180    

              190       200       210       220       230          
pF1KE1 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNTTKQEH-F
        :..  :: ..  :  :. : : :   . .: .. ::..   :. .   . . : :   :
NP_079 PLTGNVTTSQMANEQGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPMTF
          190       200       210       220       230       240    

     240       250       260        270       280                  
pF1KE1 PDNLLPSWAITLISVNGIFVICCLTY-CFAPRCRERRRNERLRRESVRPV          
       : . :  :. . .::  : ..  :.. :.                               
NP_079 PPEAL--WVTVGLSVCLIALLVALAFVCWRKIKQSCEEENAGAEDQDGEGEGSKTALQPL
            250       260       270       280       290       300  

>>NP_001316557 (OMIM: 605715) CD276 antigen isoform b pr  (316 aa)
 initn:  87 init1:  63 opt: 215  Z-score: 200.6  bits: 45.2 E(92320): 0.00021
Smith-Waterman score: 215; 28.5% identity (53.6% similar) in 239 aa overlap (46-267:46-271)

          20        30        40        50           60          70
pF1KE1 YLNFFQLLVLAGLSHFCSGVIHVTKEVKEVATLSCGHNVSVEE---LAQTRIYWQ--KEK
                                     ::: :  . : :    :::  . ::    :
NP_001 AALGALWFCLTGALEVQVPEDPVVALVGTDATLCC--SFSPEPGFSLAQLNLIWQLTDTK
          20        30        40        50          60        70   

               80        90           100       110       120      
pF1KE1 KMVLTMMSGDMNIWPEYKNRTIF--DIT--NNLSIVILALRPSDEGTYECVVLKYEKDAF
       ..: ..  :. .    : ::: .  :.   .: :. .  .: .:::.. : :      ..
NP_001 QLVHSFAEGQ-DQGSAYANRTALFPDLLAQGNASLRLQRVRVADEGSFTCFV------SI
            80         90       100       110       120            

        130       140       150            160       170        180
pF1KE1 KREHLAEVTLSVKADFPTPSISDFEIPTSNIR-----RIICSTSGGFPEPHLSWLEN-GE
       .    : :.:.: : .  ::.. .: :....:      : ::.  :.:: .. : .. : 
NP_001 RDFGSAAVSLQVAAPYSKPSMT-LE-PNKDLRPGDTVTITCSSYRGYPEAEVFWQDGQGV
        130       140        150        160       170       180    

              190       200       210       220       230          
pF1KE1 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNTTKQEH-F
        :..  :: ..  :  :. : : :   . .: .. ::..   :. .   . . : :   :
NP_001 PLTGNVTTSQMANEQGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPMTF
          190       200       210       220       230       240    

     240       250       260        270       280                  
pF1KE1 PDNLLPSWAITLISVNGIFVICCLTY-CFAPRCRERRRNERLRRESVRPV          
       : . :  :. . .::  : ..  :.. :.                               
NP_001 PPEAL--WVTVGLSVCLIALLVALAFVCWRKIKQSCEEENAGAEDQDGEGEGSKTALQPL
            250       260       270       280       290       300  

>>XP_016866546 (OMIM: 606000,612387) butyrophilin-like p  (482 aa)
 initn: 103 init1:  80 opt: 208  Z-score: 192.7  bits: 44.3 E(92320): 0.00059
Smith-Waterman score: 208; 26.2% identity (57.6% similar) in 229 aa overlap (42-257:259-477)

              20        30        40        50        60         70
pF1KE1 SKCPYLNFFQLLVLAGLSHFCSGVIHVTKEVKEVATLSCGHNVSVEELAQT-RIYWQKEK
                                     : :   :.:   .: .  ::. .. :.. .
XP_016 KGSVISLPEKLQTELASLKVNGPSQPILVRVGEDIQLTC--YLSPKANAQSMEVRWDRSH
      230       240       250       260         270       280      

                 80           90           100       110       120 
pF1KE1 KM--VLTMMSGDM---NIWPEYKNRTIF--DITNN--LSIVILALRPSDEGTYECVVLKY
       ..  : ..:.::    .   ::..::..  :  ..  :.. ::. ::::.: :.:.   .
XP_016 RYPAVHVYMDGDHVAGEQMAEYRGRTVLVSDAIDEGRLTLQILSARPSDDGQYRCL---F
        290       300       310       320       330       340      

             130       140       150       160       170        180
pF1KE1 EKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLE-NGE
       :::   .:  : . :.: .   .: :.  :   ..  . .::..: ::.::. : . .:.
XP_016 EKDDVYQE--ASLDLKVVSLGSSPLIT-VEGQEDGEMQPMCSSDGWFPQPHVPWRDMEGK
           350         360        370       380       390       400

              190       200       210       220         230        
pF1KE1 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQ--TFNWNTTKQEH
        . . . ...:  .  :. :.. :  .  .  .  : :.   :  ..  ::. . ...  
XP_016 TIPSSSQALTQGSHG-LFHVQTLLRVTNISAVDVTCSISIPFLGEEKIATFSLSESRMTF
              410        420       430       440       450         

      240       250       260       270       280        
pF1KE1 FPDNLLPSWAITLISVNGIFVICCLTYCFAPRCRERRRNERLRRESVRPV
       .  .::  :.. :  . :.                               
XP_016 LWKTLL-VWGLLLAVAVGLPRKRS                          
     460        470       480                            

>>NP_001291490 (OMIM: 606000,612387) butyrophilin-like p  (482 aa)
 initn: 103 init1:  80 opt: 208  Z-score: 192.7  bits: 44.3 E(92320): 0.00059
Smith-Waterman score: 208; 26.2% identity (57.6% similar) in 229 aa overlap (42-257:259-477)

              20        30        40        50        60         70
pF1KE1 SKCPYLNFFQLLVLAGLSHFCSGVIHVTKEVKEVATLSCGHNVSVEELAQT-RIYWQKEK
                                     : :   :.:   .: .  ::. .. :.. .
NP_001 KGSVISLPEKLQTELASLKVNGPSQPILVRVGEDIQLTC--YLSPKANAQSMEVRWDRSH
      230       240       250       260         270       280      

                 80           90           100       110       120 
pF1KE1 KM--VLTMMSGDM---NIWPEYKNRTIF--DITNN--LSIVILALRPSDEGTYECVVLKY
       ..  : ..:.::    .   ::..::..  :  ..  :.. ::. ::::.: :.:.   .
NP_001 RYPAVHVYMDGDHVAGEQMAEYRGRTVLVSDAIDEGRLTLQILSARPSDDGQYRCL---F
        290       300       310       320       330       340      

             130       140       150       160       170        180
pF1KE1 EKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLE-NGE
       :::   .:  : . :.: .   .: :.  :   ..  . .::..: ::.::. : . .:.
NP_001 EKDDVYQE--ASLDLKVVSLGSSPLIT-VEGQEDGEMQPMCSSDGWFPQPHVPWRDMEGK
           350         360        370       380       390       400

              190       200       210       220         230        
pF1KE1 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQ--TFNWNTTKQEH
        . . . ...:  .  :. :.. :  .  .  .  : :.   :  ..  ::. . ...  
NP_001 TIPSSSQALTQGSHG-LFHVQTLLRVTNISAVDVTCSISIPFLGEEKIATFSLSESRMTF
              410        420       430       440       450         

      240       250       260       270       280        
pF1KE1 FPDNLLPSWAITLISVNGIFVICCLTYCFAPRCRERRRNERLRRESVRPV
       .  .::  :.. :  . :.                               
NP_001 LWKTLL-VWGLLLAVAVGLPRKRS                          
     460        470       480                            

>>NP_001723 (OMIM: 601610) butyrophilin subfamily 1 memb  (526 aa)
 initn:  43 init1:  43 opt: 197  Z-score: 183.1  bits: 42.7 E(92320): 0.002
Smith-Waterman score: 197; 26.3% identity (55.7% similar) in 262 aa overlap (42-283:42-287)

              20        30        40        50          60         
pF1KE1 SKCPYLNFFQLLVLAGLSHFCSGVIHVTKEVKEVATLSC--GHNVSVEELAQTRIYWQKE
                                     : : : : :  . :.:.:.: . : . .: 
NP_001 CLLTLILLQLPKLDSAPFDVIGPPEPILAVVGEDAELPCRLSPNASAEHL-ELRWFRKKV
              20        30        40        50        60         70

      70           80        90           100       110       120  
pF1KE1 KKMVLTMMSG---DMNIWPEYKNRTIF--D--ITNNLSIVILALRPSDEGTYECVVLKYE
       .  ::.  .:   . .  :::..:. .  :    . ... : ..: ::.: : :    ..
NP_001 SPAVLVHRDGREQEAEQMPEYRGRATLVQDGIAKGRVALRIRGVRVSDDGEYTCF---FR
               80        90       100       110       120          

            130       140       150       160       170        180 
pF1KE1 KDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSW-LENGEE
       .:.  .: :  : :.: :    : :: ...  ..   . :.. : .:::...:   .::.
NP_001 EDGSYEEAL--VHLKVAALGSDPHIS-MQVQENGEICLECTSVGWYPEPQVQWRTSKGEK
       130         140       150        160       170       180    

             190        200       210       220       230       240
pF1KE1 LNAINTTVSQDPETE-LYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNTTKQEHFP
       .   .:. :..:. : :..:.... .  :. ..  : :.      :  .. .   .  .:
NP_001 FP--STSESRNPDEEGLFTVAASVIIRDTSAKNVSCYIQ------NLLLGQEKKVEISIP
            190       200       210       220             230      

                 250          260          270       280           
pF1KE1 DNLLPS---WAIT---LISVNGIFVICCLTYC---FAPRCRERRRNERLRRESVRPV   
        . ::    : ..   .. : :...:  . .    .  : :::: ::   .:        
NP_001 ASSLPRLTPWIVAVAVILMVLGLLTIGSIFFTWRLYNERPRERR-NEFSSKERLLEELKW
        240       250       260       270       280        290     

NP_001 KKATLHAVDVTLDPDTAHPHLFLYEDSKSVRLEDSRQKLPEKTERFDSWPCVLGRETFTS
         300       310       320       330       340       350     




288 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:39:14 2019 done: Thu Oct 24 21:39:14 2019
 Total Scan time:  4.180 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com