GENSCAN 1.0	Date run:  6-Nov-116	Time: 17:52:22

Sequence gi568815595f:42402736_42636278 : 233543 bp : 44.69% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 Intr -   1389   1311   79  1  1  100  115    48 0.957   7.31
 1.03 Intr -   4263   4111  153  1  0   87  131   208 0.998  25.04
 1.02 Intr -   4529   4378  152  1  2   44   74   146 0.658   8.61
 1.01 Init -  11561  11416  146  2  2   39   42   133 0.314   3.39
 1.00 Prom -  13576  13537   40                              -8.06

 2.00 Prom +  15600  15639   40                              -4.66
 2.01 Init +  18877  19153  277  0  1   52   59   200 0.202  10.74
 2.02 Term +  31644  31729   86  1  2   93   37    70 0.151   0.22
 2.03 PlyA +  32072  32077    6                               1.05

 3.03 PlyA -  34257  34252    6                               1.05
 3.02 Term -  40723  40550  174  1  0   46   34   158 0.454   3.96
 3.01 Init -  42697  42692    6  1  0   72   77     0 0.176  -1.83
 3.00 Prom -  47831  47792   40                              -0.76

 4.03 PlyA -  48372  48367    6                               1.05
 4.02 Term -  56212  55984  229  0  1   36   39   189 0.387   4.90
 4.01 Init -  91141  91032  110  1  2   57   92    68 0.359   3.92
 4.00 Prom -  95021  94982   40                              -4.56

 5.00 Prom +  95126  95165   40                              -6.76
 5.01 Init + 100001 100078   78  1  0   73  101   139 0.608  12.76
 5.02 Intr + 111014 111119  106  1  1  108   66   141 0.993  13.69
 5.03 Intr + 116488 116595  108  2  0  101  116    46 0.665   8.96
 5.04 Intr + 123152 123258  107  0  2   97   90   128 0.865  13.83
 5.05 Intr + 124634 124761  128  1  2   21   94   183 0.520  11.68
 5.06 Intr + 125256 125388  133  0  1   70   85   252 0.997  23.75
 5.07 Intr + 128044 128197  154  0  1  137   39   178 0.854  17.45
 5.08 Intr + 128736 128796   61  1  1   83   80    38 0.708   0.29
 5.09 Intr + 129068 129134   67  2  1   76   91    48 0.791   2.81
 5.10 Intr + 129507 129598   92  2  2   68   80   109 0.697   6.89
 5.11 Intr + 132240 132369  130  0  1   93   80   162 0.992  16.60
 5.12 Intr + 132608 132649   42  1  0  127   99    67 0.995  10.14
 5.13 Term + 133355 133546  192  1  0  110   47   203 0.594  15.82
 5.14 PlyA + 134816 134821    6                               1.05

 6.06 PlyA - 135963 135958    6                              -0.45
 6.05 Term - 139848 139782   67  2  1   88   47    64 0.040  -0.29
 6.04 Intr - 148016 147893  124  0  1   16   64   110 0.068   1.04
 6.03 Intr - 158561 158382  180  0  0  126  119    83 0.985  15.04
 6.02 Intr - 160951 160788  164  0  2   70   10   103 0.650   0.32
 6.01 Init - 166311 166130  182  0  2   72   98    78 0.741   4.05
 6.00 Prom - 172644 172605   40                              -2.16

 7.00 Prom + 174653 174692   40                              -6.86
 7.01 Init + 188163 188231   69  2  0   59   88    55 0.319   3.65
 7.02 Intr + 188790 188866   77  2  2  126   92   158 0.571  18.31
 7.03 Term + 191687 191774   88  2  1  125   33     9 0.395  -3.77
 7.04 PlyA + 192236 192241    6                               1.05

 8.00 Prom + 195115 195154   40                              -4.36
 8.01 Init + 198061 198145   85  0  1   59   41   119 0.950   3.28
 8.02 Intr + 198249 198329   81  1  0  132   88   151 0.960  19.11
 8.03 Intr + 216285 216392  108  1  0  120   75    31 0.913   5.26
 8.04 Intr + 217281 217308   28  1  1  111  116     0 0.927   2.27
 8.05 Intr + 228436 228581  146  1  2   49   95   114 0.861   8.13
 8.06 Intr + 229941 230088  148  1  1  102   83    50 0.985   5.19
 8.07 Intr + 230845 231000  156  1  0   28  103   138 0.969   8.43
 8.08 Intr + 231878 231902   25  2  1  105   87    15 0.666   1.13
 8.09 Term + 232486 232635  150  0  0   57   48    88 0.862  -0.39
 8.10 PlyA + 233017 233022    6                              -0.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  88401  88293  109  2  1  149   42    53 0.960   4.78


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:42402736_42636278|GENSCAN_predicted_peptide_1|177_aa
MENSIRGFNRKFNIPEERIPELPGRPEYMIQDAVQGYRHEKYETLRHGGSLEKMKASVVL
SLLGYLVVPSGAYILGRCTVAKKLHDGGLDYFEGYSLENWVCLAYFESKFNPMAIYENTR
EGYTGFGLFQMRGSDWCGDHGRNRCHMSCSALLNPNLEKTIKCAKTIVKGKEGMGAX

>gi568815595f:42402736_42636278|GENSCAN_predicted_CDS_1|531_bp
atggaaaactcaattcgtggatttaaccgcaaatttaatattcctgaagagagaattcct
gagctgccaggtagacctgaatacatgatccaggatgcagtccagggatacagacatgag
aaatatgagacattgagacatggagggagcctggagaagatgaaggcatccgtggttctc
tccctccttggctacctggtggttccaagtggtgcttacatcttggggcgttgcacagtg
gctaagaaactccacgatggaggcctggattattttgagggctatagccttgagaactgg
gtgtgcctggcctacttcgagagcaagttcaaccccatggccatctacgagaacacacgt
gagggctacactggctttggcctctttcagatgcgtggcagtgactggtgtggcgaccat
ggcaggaaccgctgccatatgtcatgttccgctttactgaatcctaatttagagaagaca
attaaatgtgccaagaccattgtaaaaggaaaagaagggatgggagcatgn

>gi568815595f:42402736_42636278|GENSCAN_predicted_peptide_2|120_aa
MAPPEVILLNTHSAAFMLQRQRYGWVLMLLLNSPCDLGQETSLSKPQYPYVQNGAESGAN
LFRSYGKFLVHHKLSMNAKDKEEERPGVQCGADLAAFSGSNSSGKDSLCSQTSMLIQTFM

>gi568815595f:42402736_42636278|GENSCAN_predicted_CDS_2|363_bp
atggctcctccagaggtcatccttttaaacacgcactcagctgcttttatgctccagaga
cagagatatggctgggtcctgatgctgcttcttaatagcccgtgtgacctaggacaagaa
acatcactctccaaacctcagtatccctacgtgcaaaatggggctgaaagtggcgctaac
ctcttcaggtcgtatggaaagttcctggtccaccacaagctctccatgaatgccaaggac
aaggaagaagagcgcccaggggtgcagtgcggagcggatcttgctgccttctcaggatcc
aacagtagtgggaaagattctctttgctctcagacctccatgctgattcagaccttcatg
taa

>gi568815595f:42402736_42636278|GENSCAN_predicted_peptide_3|59_aa
MELQPMAEYVFSDEEGRQQNQKKYKERCFFITPPQSLVNFPDFVTHGPKILLKESSTRR

>gi568815595f:42402736_42636278|GENSCAN_predicted_CDS_3|180_bp
atggagctacagcccatggcagagtacgtgttttctgatgaagaaggaagacagcaaaat
cagaaaaaatacaaagagagatgcttcttcatcacaccaccccaaagccttgtcaacttt
ccagacttcgtgacccatggacctaagattctgctgaaagagtcttccacaagacgttaa

>gi568815595f:42402736_42636278|GENSCAN_predicted_peptide_4|112_aa
MGPESGLPLAEKVEHSPGLCLSDEDLRTLKKRPEKPSKSCEIYQAQNNKFLLEKSVSICA
RFHRIYDRANQGNHKRDCGYGKKVEDEEFRDMAVGEIQELTDTTLEELTEDD

>gi568815595f:42402736_42636278|GENSCAN_predicted_CDS_4|339_bp
atgggcccagagtctgggctcccattggctgagaaggtagagcacagcccaggtctgtgc
ctctctgacgaggacctcaggaccctgaagaaacgcccagagaaacccagtaaaagctgt
gaaatctatcaagcccaaaacaataaattcctgctagagaaatctgtgtccatatgtgca
agatttcacagaatttatgacagagccaatcaaggaaatcataaaagagattgtggatat
ggcaagaaggtagaggatgaagagtttagagatatggctgttggagaaattcaagagctg
acagacactacactagaggaattaacagaagacgactaa

>gi568815595f:42402736_42636278|GENSCAN_predicted_peptide_5|465_aa
MRPPSPLPARWLCVLAGALAWALGPAGGQAARLQEECDYVQMIEVQHKQCLEEAQLENET
IGCSKMWDNLTCWPATPRGQVVVLACPLIFKLFSSIQGRNVSRSCTDEGWTHLEPGPYPI
ACGLDDKAASLDESLSLSLQQQQTMFYGSVKTGYTIGYGLSLATLLVATAILSLFRKLHC
TRNYIHMHLFISFILRAAAVFIKDLALFDSGESDQCSEGSVGCKAAMVFFQYCVMANFFW
LLVEGLYLYTLLAVSFFSERKYFWGYILIGWGVPSTFTMVWTIARIHFEDYGCWDTINSS
LWWIIKGPILTSILVNFILFICIIRILLQKLRPPDIRKSDSSPYSRLARSTLLLIPLFGV
HYIMFAFFPDNFKPEVKMVFELVVGSFQGFVVAILYCFLNGEVQAELRRKWRRWHLQGVL
GWNPKYRHPSGGSNGATCSTQVSMLTRVSPGARRSSSFQAEVSLV

>gi568815595f:42402736_42636278|GENSCAN_predicted_CDS_5|1398_bp
atgcgcccgccaagtccgctgcccgcccgctggctatgcgtgctggcaggcgccctcgcc
tgggcccttgggccggcgggcggccaggcggccaggctgcaggaggagtgtgactatgtg
cagatgatcgaggtgcagcacaagcagtgcctggaggaggcccagctggagaatgagaca
ataggctgcagcaagatgtgggacaacctcacctgctggccagccacccctcggggccag
gtagttgtcttggcctgtcccctcatcttcaagctcttctcctccattcaaggccgcaat
gtaagccgcagctgcaccgacgaaggctggacgcacctggagcctggcccgtaccccatt
gcctgtggtttggatgacaaggcagcgagtttggatgagagcctctccctgtccctccaa
cagcagcagaccatgttctacggttctgtgaagaccggctacaccattggctacggcctg
tccctcgccacccttctggtcgccacagctatcctgagcctgttcaggaagctccactgc
acgcggaactacatccacatgcacctcttcatatccttcatcctgagggctgccgctgtc
ttcatcaaagacttggccctcttcgacagcggggagtcggaccagtgctccgagggctcg
gtgggctgtaaggcagccatggtctttttccaatattgtgtcatggctaacttcttctgg
ctgctggtggagggcctctacctgtacaccctgcttgccgtctccttcttctctgagcgg
aagtacttctgggggtacatactcatcggctggggggtacccagcacattcaccatggtg
tggaccatcgccaggatccattttgaggattatgggtgctgggacaccatcaactcctca
ctgtggtggatcataaagggccccatcctcacctccatcttggtaaacttcatcctgttt
atttgcatcatccgaatcctgcttcagaaactgcggcccccagatatcaggaagagtgac
agcagtccatactcaaggctagccaggtccacactcctgctgatccccctgtttggagta
cactacatcatgttcgccttctttccggacaattttaagcctgaagtgaagatggtcttt
gagctcgtcgtggggtctttccagggttttgtggtggctatcctctactgcttcctcaat
ggtgaggtgcaggcggagctgaggcggaagtggcggcgctggcacctgcagggcgtcctg
ggctggaaccccaaataccggcacccgtcgggaggcagcaacggcgccacgtgcagcacg
caggtttccatgctgacccgcgtcagcccaggtgcccgccgctcctccagcttccaagcc
gaagtctccctggtctga

>gi568815595f:42402736_42636278|GENSCAN_predicted_peptide_6|238_aa
MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSI
HFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSIIQ
KVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPGSKET
VLEDESFLVMLPDHRGTTRDVIHTRSNVWISVNIYMGFNGCATEILAVMFGKVAAAMV

>gi568815595f:42402736_42636278|GENSCAN_predicted_CDS_6|717_bp
atgtccgtgatcttttttgcctgcgtggtacgggtaagggatggactgcccctctcagcc
tctactgatttttaccacacccaagattttttggaatggaggagacggctcaagagttta
gccttgcgactggcccagtatccaggtcgaggttctgcagaaggttgtgactttagtata
catttttcttctttcggggacgtggcctgcatggctatctgctcctgccagtgtccagca
gccatggccttctgcttcctggagaccctgtggtgggaattcacagcttcctatgacact
acctgcattggcctagcctccaggccatacgcttttcttgagtttgacagcatcattcag
aaagtgaagtggcattttaactatgtaagttcctctcagatggagtgcagcttggaaaaa
attcaggaggagctcaagttgcagcctccagcggttctcactctggaggacacagatgtg
gcaaatggggtgatgaatggtcacacaccgatgcacttggagcctggcagtaaagaaacg
gtccttgaagatgagtccttcctggtaatgcttcctgaccaccgaggcactaccagagat
gttatccacaccaggtcgaatgtgtggatatcagttaacatctacatgggctttaatgga
tgtgcaaccgagatattggcagtaatgttcggcaaggtggcagctgcaatggtgtga

>gi568815595f:42402736_42636278|GENSCAN_predicted_peptide_7|77_aa
MSVAFVPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIY
LATIADASPTSTSKAME

>gi568815595f:42402736_42636278|GENSCAN_predicted_CDS_7|234_bp
atgtcggtggccttcgtaccggactggctgaggggcaaggcggaagtcaatcaagagact
atccagcggctccttgaggagaatgaccagctgatccgctgtattgtggagtatcagaac
aagggccgcgggaacgagtgcgtgcagtaccagcatgtgttacatagaaatctcatttat
ttggctaccattgcagatgccagtccaaccagcacttcaaaagcaatggaataa

>gi568815595f:42402736_42636278|GENSCAN_predicted_peptide_8|308_aa
MRARCVGAARPGAGGGLVLASCAVATGRPLAATSVAMGAQDRPQCHFDIEINREPGEKGL
GKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEENVVFCKMKRVHVVFGLVISGFEVIEQIE
NLKTDAASRPYADVRVIDCGVLATKSIKDESSSESELEHERSRRRKHKRRPKVKRSKKRR
KEASSSEEPRNKHAMNPKGHSERSDTNEKRSVDSSAKREKPVVRPEEIPPVPENRFLLRR
DMPVVTAEPEPKIPDVAPIRYHTPPRSRSCSESDDDDSSETPPHWKEEMQRLRAYRPPSG
EKWSKGDK

>gi568815595f:42402736_42636278|GENSCAN_predicted_CDS_8|927_bp
atgcgtgcgcgctgcgtgggagccgcgaggcccggggcgggagggggcctcgtcttggcc
tcctgcgctgtcgcgacgggccggcctcttgccgccacctcggtcgcgatgggggcgcag
gaccggccgcagtgccacttcgacatcgagatcaaccgggagccgggagagaaaggcctt
gggaaaacaactgggaagaagttatgttataaaggttctacgttccatcgtgtggttaaa
aactttatgattcagggtggggacttcagtgaagagaatgtggtcttttgcaaaatgaaa
agggtgcatgtagtctttggactggttatttctggttttgaagtaatcgaacaaattgaa
aatctgaagaccgatgctgcaagcagaccatatgcagatgtgcgagttattgactgtgga
gtacttgccacaaaatcaataaaagatgaatcatcttcagaaagtgaacttgaacatgag
agaagcagaaggaggaaacataagaggaggccaaaagttaaacgttctaaaaagaggcga
aaggaagcaagcagttcagaagagccaaggaataaacatgcaatgaacccaaaaggtcac
tctgagaggagtgataccaatgaaaaaaggtcagttgattccagtgctaaaagggaaaaa
cctgtggtccgcccagaagagattcctccagtgcctgagaaccgatttttactgagaaga
gatatgcctgttgttactgcagaacctgaaccgaagattcctgatgttgcacccattcgc
tatcacacacctccaagatcaagatcctgttctgagtcagatgatgatgacagcagtgaa
actcctcctcactggaaagaggaaatgcagagattaagagcatatagaccacctagtgga
gaaaaatggagtaaaggagataagtaa