Result of FASTA (omim) for pF1KB6904
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6904, 223 aa
  1>>>pF1KB6904     223 - 223 aa - 223 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3929+/-0.000326; mu= 19.0676+/- 0.020
 mean_var=62.8771+/-12.658, 0's: 0 Z-trim(116.2): 22  B-trim: 283 in 1/48
 Lambda= 0.161744
 statistics sampled from 28354 (28376) to 28354 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.307), width:  16
 Scan time:  2.980

The best scores are:                                      opt bits E(92320)
NP_005205 (OMIM: 123890,140300,152700,601388,60975 ( 223) 1501 358.4 5.9e-99
NP_001032720 (OMIM: 123890,140300,152700,601388,60 ( 174) 1021 246.3 2.6e-65
NP_006130 (OMIM: 186760) T-cell-specific surface g ( 220)  280 73.5 3.4e-13
XP_011510496 (OMIM: 186760) T-cell-specific surfac ( 234)  275 72.3 8.1e-13
NP_001138939 (OMIM: 609148,611550) natural cytotox ( 190)  151 43.3 0.00036
NP_001138938 (OMIM: 609148,611550) natural cytotox ( 177)  149 42.8 0.00047
XP_011510499 (OMIM: 186760) T-cell-specific surfac ( 136)  129 38.0  0.0099


>>NP_005205 (OMIM: 123890,140300,152700,601388,609755,61  (223 aa)
 initn: 1501 init1: 1501 opt: 1501  Z-score: 1898.1  bits: 358.4 E(92320): 5.9e-99
Smith-Waterman score: 1501; 99.6% identity (100.0% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KB6 MACLGFQRHKAQLNLAARTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_005 MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFL
              130       140       150       160       170       180

              190       200       210       220   
pF1KB6 LTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN
       :::::::::::::::::::::::::::::::::::::::::::
NP_005 LTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN
              190       200       210       220   

>>NP_001032720 (OMIM: 123890,140300,152700,601388,609755  (174 aa)
 initn: 1021 init1: 1021 opt: 1021  Z-score: 1294.2  bits: 246.3 E(92320): 2.6e-65
Smith-Waterman score: 1021; 96.8% identity (97.5% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB6 MACLGFQRHKAQLNLAARTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_001 MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFL
       ::::::::::::::::::::::::::::::::  :  :                      
NP_001 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIAKEKKPSYNRGLCENAPNRARM      
              130       140       150       160       170          

              190       200       210       220   
pF1KB6 LTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN

>>NP_006130 (OMIM: 186760) T-cell-specific surface glyco  (220 aa)
 initn: 150 init1: 128 opt: 280  Z-score: 358.4  bits: 73.5 E(92320): 3.4e-13
Smith-Waterman score: 280; 31.0% identity (61.9% similar) in 210 aa overlap (24-221:5-212)

               10        20        30          40        50        
pF1KB6 MACLGFQRHKAQLNLAARTWPCTLLFFLLF--IPVFCKAMHVAQPAVVLASSRGIASFVC
                              :: . ::  : :  . . : :  ...: . .. .. :
NP_006                    MLRLLLALNLFPSIQVTGNKILVKQSPMLVAYDNAV-NLSC
                                  10        20        30         40

       60        70        80        90       100         110      
pF1KB6 EYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDS--ICTGTSSGNQVNLTI
       .:.    . : :... .  :: : :::..   ....:   . .   : :  ....:.. .
NP_006 KYSYNLFSREFRASLHKGLDSAV-EVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYL
               50        60         70        80        90         

        120       130       140        150       160            170
pF1KB6 QGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIDPEPCPDSDFL-----LWILAAV
       :.: . .: .:.::.:.::::::  .  .::: :.:   . ::.  :      .:.:..:
NP_006 QNLYVNQTDIYFCKIEVMYPPPYLDNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWVLVVV
     100       110       120       130       140       150         

              180       190        200        210       220        
pF1KB6 SSGLFFYSFLLTAVSLSKMLK-KRSPLTTGVYVKMPPTEP-ECEKQFQPYFIPIN     
       .. :  ::.:.:.. .   .. ::: :  . :..: : .:   .:..:::  :       
NP_006 GGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYR
     160       170       180       190       200       210         

NP_006 S
     220

>>XP_011510496 (OMIM: 186760) T-cell-specific surface gl  (234 aa)
 initn: 150 init1: 128 opt: 275  Z-score: 351.7  bits: 72.3 E(92320): 8.1e-13
Smith-Waterman score: 275; 30.7% identity (63.0% similar) in 192 aa overlap (40-221:37-226)

      10        20        30        40        50        60         
pF1KB6 KAQLNLAARTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEYASPGKATEV
                                     : :  ...: . .. .. :.:.    . : 
XP_011 ALIMCPKGMVAVVVAVDDGDSQALAGNKILVKQSPMLVAYDNAV-NLSCKYSYNLFSREF
         10        20        30        40        50         60     

      70        80        90       100         110       120       
pF1KB6 RVTVLRQADSQVTEVCAATYMMGNELTFLDDS--ICTGTSSGNQVNLTIQGLRAMDTGLY
       :... .  :: : :::..   ....:   . .   : :  ....:.. .:.: . .: .:
XP_011 RASLHKGLDSAV-EVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIY
          70         80        90       100       110       120    

       130       140        150       160            170       180 
pF1KB6 ICKVELMYPPPYYLG-IGNGTQIYVIDPEPCPDSDFL-----LWILAAVSSGLFFYSFLL
       .::.:.::::::  .  .::: :.:   . ::.  :      .:.:..:.. :  ::.:.
XP_011 FCKIEVMYPPPYLDNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWVLVVVGGVLACYSLLV
          130       140       150       160       170       180    

             190        200        210       220         
pF1KB6 TAVSLSKMLK-KRSPLTTGVYVKMPPTEP-ECEKQFQPYFIPIN      
       :.. .   .. ::: :  . :..: : .:   .:..:::  :        
XP_011 TVAFIIFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRS
          190       200       210       220       230    

>>NP_001138939 (OMIM: 609148,611550) natural cytotoxicit  (190 aa)
 initn:  56 init1:  35 opt: 151  Z-score: 196.5  bits: 43.3 E(92320): 0.00036
Smith-Waterman score: 151; 26.5% identity (54.6% similar) in 196 aa overlap (24-211:6-189)

               10        20        30        40        50          
pF1KB6 MACLGFQRHKAQLNLAARTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFV-CE
                              ::....  :  : :. :.::  .  . .: ..:. : 
NP_001                   MAWMLLLILIMVHPGSC-ALWVSQPPEI-RTLEGSSAFLPCS
                                 10         20         30        40

      60         70        80        90       100       110        
pF1KB6 Y-ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQG
       . :: :. .   :: .:.      ::  .:  . ..:. : .:        .:..: :. 
NP_001 FNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRD
               50        60        70        80           90       

      120       130       140       150       160       170        
pF1KB6 LRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYS
       .:. :...:.:.::..      .: ::::.. :   .:   .  .: . :    :..  :
NP_001 VRGHDASIYVCRVEVL---GLGVGTGNGTRLVVEKEHPQLGAGTVLLLRA----GFYAVS
       100       110          120       130       140           150

      180       190       200             210       220   
pF1KB6 FLLTAVSLSKMLKKRSPLTTGVYVKMP--PT----EPECEKQFQPYFIPIN
       :: .::. . . . .     :.. .    :     ::.:            
NP_001 FLSVAVGSTVYYQGKCHCHMGTHCHSSDGPRGVIPEPRCP           
              160       170       180       190           

>>NP_001138938 (OMIM: 609148,611550) natural cytotoxicit  (177 aa)
 initn:  56 init1:  35 opt: 149  Z-score: 194.4  bits: 42.8 E(92320): 0.00047
Smith-Waterman score: 149; 28.8% identity (57.1% similar) in 163 aa overlap (24-184:6-156)

               10        20        30        40        50          
pF1KB6 MACLGFQRHKAQLNLAARTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFV-CE
                              ::....  :  : :. :.::  .  . .: ..:. : 
NP_001                   MAWMLLLILIMVHPGSC-ALWVSQPPEI-RTLEGSSAFLPCS
                                 10         20         30        40

      60         70        80        90       100       110        
pF1KB6 Y-ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQG
       . :: :. .   :: .:.      ::  .:  . ..:. : .:        .:..: :. 
NP_001 FNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRD
               50        60        70        80           90       

      120       130       140       150       160       170        
pF1KB6 LRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYS
       .:. :...:.:.::..      .: ::::.. :   .:   .  .: . :    :..  :
NP_001 VRGHDASIYVCRVEVL---GLGVGTGNGTRLVVEKEHPQLGAGTVLLLRA----GFYAVS
       100       110          120       130       140           150

      180       190       200       210       220   
pF1KB6 FLLTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN
       :: .::                                       
NP_001 FLSVAVGSTVYYQGKYAKSTLSGFPQL                  
              160       170                         

>>XP_011510499 (OMIM: 186760) T-cell-specific surface gl  (136 aa)
 initn:  65 init1:  43 opt: 129  Z-score: 170.6  bits: 38.0 E(92320): 0.0099
Smith-Waterman score: 129; 34.5% identity (61.9% similar) in 84 aa overlap (145-221:45-128)

          120       130       140       150       160              
pF1KB6 TIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFL-----LWILAA
                                     ::: :.:   . ::.  :      .:.:..
XP_011 QVTGNKILVKQSPMLVAYDNAVNLSYNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWVLVV
           20        30        40        50        60        70    

     170       180       190        200        210       220       
pF1KB6 VSSGLFFYSFLLTAVSLSKMLK-KRSPLTTGVYVKMPPTEP-ECEKQFQPYFIPIN    
       :.. :  ::.:.:.. .   .. ::: :  . :..: : .:   .:..:::  :      
XP_011 VGGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAY
           80        90       100       110       120       130    

XP_011 RS
         




223 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:38:19 2019 done: Thu Oct 24 21:38:19 2019
 Total Scan time:  2.980 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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