GENSCAN 1.0	Date run: 19-Feb-121	Time: 20:36:30

Sequence gi568815597r:116419231_116670972 : 251742 bp : 44.51% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   9605   9644   40                              -2.16
 1.01 Init +  25309  25371   63  0  0   76   82    72 0.148   6.55
 1.02 Term +  26353  26418   66  0  0   80   41    51 0.069  -2.46
 1.03 PlyA +  28422  28427    6                               1.05

 2.03 PlyA -  29348  29343    6                               1.05
 2.02 Term -  38986  38885  102  1  0   31   48   162 0.487   4.78
 2.01 Init -  45764  45741   24  2  0   69  119     7 0.398   1.50
 2.00 Prom -  45944  45905   40                              -4.46

 3.03 PlyA -  46293  46288    6                               1.05
 3.02 Term -  47836  47698  139  0  1   75   42   166 0.620   8.14
 3.01 Init -  50055  50027   29  0  2   84   73    29 0.599   0.07
 3.00 Prom -  52472  52433   40                              -5.36

 4.07 PlyA -  53982  53977    6                               1.05
 4.06 Term -  54191  54040  152  0  2   80   47    62 0.087  -0.63
 4.05 Intr -  58942  58822  121  1  1  117  119    13 0.104   7.37
 4.04 Intr -  77126  77049   78  2  0  125   31    32 0.321   0.95
 4.03 Intr -  78503  78477   27  2  0  124   79     1 0.475   1.11
 4.02 Intr -  79673  79572  102  2  0   46   72    74 0.377   1.97
 4.01 Init -  91802  91749   54  2  0   86   81    63 0.456   4.73
 4.00 Prom - 106741 106702   40                              -2.26

 5.04 PlyA - 107284 107279    6                               1.05
 5.03 Term - 113918 113706  213  2  0   -8   49   328 0.542  16.53
 5.02 Intr - 114237 113926  312  0  0  -29  -53   296 0.178   0.18
 5.01 Init - 115018 114284  735  1  0   28    6   563 0.496  36.67
 5.00 Prom - 115796 115757   40                              -2.16

 6.03 PlyA - 118500 118495    6                               1.05
 6.02 Term - 130939 130833  107  2  2   61   49   103 0.725   2.27
 6.01 Init - 151742 151673   70  2  1   83   97   152 0.999  14.81
 6.00 Prom - 155651 155612   40                              -7.36

 7.12 PlyA - 155743 155738    6                              -0.45
 7.11 Term - 158332 158082  251  2  2  108   47   276 0.896  21.37
 7.10 Intr - 160647 160162  486  1  0  103   89   745 0.989  69.09
 7.09 Intr - 165822 165415  408  1  0  118   94   445 0.996  42.34
 7.08 Intr - 169874 169464  411  0  0  109  110   588 0.999  57.26
 7.07 Intr - 176092 175955  138  2  0   38  110    91 0.130   6.74
 7.06 Intr - 181115 180711  405  0  0  107  109   561 0.252  54.42
 7.05 Intr - 184795 184394  402  2  0   98   97   630 0.995  59.30
 7.04 Intr - 189101 188712  390  0  0   81   89   593 0.772  53.40
 7.03 Intr - 194945 194535  411  0  0   94   65   538 0.743  46.26
 7.02 Intr - 197227 196850  378  2  0  102   82   392 0.463  34.94
 7.01 Init - 247096 247054   43  1  1  107  106   103 0.855  12.58

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  21215  21072  144  2  0   34   54   169 0.835   2.01
S.002 Term - 151342 151143  200  2  2   68   48    60 0.894  -2.44
S.003 Intr + 234564 234825  262  2  1   96   86    78 0.923   5.46
S.004 Term + 235699 235814  116  2  2  100   49    47 0.940   0.73


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:116419231_116670972|GENSCAN_predicted_peptide_1|42_aa
MEPEDATHVDETHLANAQPENTNSTHEKIKPVSKLKAAPLTA

>gi568815597r:116419231_116670972|GENSCAN_predicted_CDS_1|129_bp
atggagccagaggatgcaactcatgtggatgagacccatttggccaatgcacagccggag
aataccaactcaacacatgagaagattaagccagtatccaagctcaaggctgcaccccta
acagcctga

>gi568815597r:116419231_116670972|GENSCAN_predicted_peptide_2|41_aa
MTGTRKKLRVGIPLALPQLHPECRQLKYTSALTELAGDVQL

>gi568815597r:116419231_116670972|GENSCAN_predicted_CDS_2|126_bp
atgactgggacaagaaagaagctgagggttgggattccactggccctgccccagctgcac
cctgaatgccgtcagctcaagtacaccagcgcgctgacggagctggcaggtgacgtgcag
ctgtga

>gi568815597r:116419231_116670972|GENSCAN_predicted_peptide_3|55_aa
MDNINAVIKGLIPIISTLPLSSQPLSIVTVITIIISTTIITVITITTIITTILPS

>gi568815597r:116419231_116670972|GENSCAN_predicted_CDS_3|168_bp
atggataacatcaatgcagtaattaaaggtcttatccccatcatctcaacactacctcta
tcatcacaaccactgtcaattgtcaccgtcatcaccattatcatcagcactactatcatt
actgtcatcaccatcaccaccatcattaccaccatcttaccatcatga

>gi568815597r:116419231_116670972|GENSCAN_predicted_peptide_4|177_aa
MALASGLCSWSLAAAQHLTVAPRNLLLPYLMGLNRRYIPRFTIATFRERLHQIQSYKQRQ
QDHADSVGPGPGSTSQASEHVNLRTEQVLTSLSCFPLLQYGFDILIITATAKIPLCFINP
EENTMSADPGTHSLDSKFHEDRVHVSFISEVPGPSKGPGTMQMLKKYCWMLNEWMNE

>gi568815597r:116419231_116670972|GENSCAN_predicted_CDS_4|534_bp
atggcactggcttctgggctatgcagctggagcctagctgcagcccagcacctgaccgtg
gcaccaaggaacctgctgctaccctacttgatggggctgaacaggagatatattccacgc
ttcacaattgccacctttcgggagcggcttcaccagattcagtcatataagcagaggcag
caggaccatgctgattctgtgggaccaggcccgggctctaccagccaggcctctgaacat
gtcaacttgagaactgaacaggttctcacatcgctttcctgtttccctctcctgcaatat
ggatttgacatattaatcattacagcaactgctaaaattccactgtgcttcattaatccg
gaggaaaataccatgtcagctgaccctggcactcactcattagattccaagttccatgag
gacagggtccatgtctccttcatcagtgaggtcccagggcctagcaaagggcctggcacg
atgcagatgctcaagaaatattgctggatgttgaatgaatggatgaatgaatga

>gi568815597r:116419231_116670972|GENSCAN_predicted_peptide_5|419_aa
MGKKVLGIASQLLGAVRCEPDGRRVLPEDWPECLSLVTHGTWFTRQGDKNIQMADNSFSD
GVPSDFVEAAKNASKTEKLTDQVMQNPGVLAALQERLDNAPHTPSSYIETLPKAVKRRIN
ALKQIQVRCAHIEAKFYEEVHDLERKYAALYQPLFDERREFITGDVEPTSDMESEWHREN
EEEEKLAGDRKNKVVITEKAAATAEEPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKY
LQDIKFHFQPNDCFANSVLTKTCKMKSEPDKADPFSFAGPEIMDCDGCTIDWKKGKNVTV
KTIKKKQKRKGPGTVRTITKQVSNESFFNFFNPLKASGDGESLDKDSEFPLILKLDTFSV
SGPQAVLYFAGEALKDDDNFDEGEEEEDELEGDEEGEDEDEVEINPNKEPSQPAECKQQ

>gi568815597r:116419231_116670972|GENSCAN_predicted_CDS_5|1260_bp
atggggaagaaagtccttggcattgcatctcagctgttgggagctgtgcggtgcgagcca
gatgggcggcgtgtgctccccgaggactggcctgagtgccttagcctagttactcacggg
acttggtttaccagacaaggggataaaaacattcagatggcagataacagtttttcagat
ggggttccttcagatttcgtggaagctgctaaaaatgcaagtaagacggaaaagctcacg
gatcaggtgatgcagaatcctggagttttggcagctttacaggagcgacttgacaatgcc
cctcacaccccttccagctacatcgaaactttacctaaagcagtaaaaagaagaattaat
gcattgaaacaaattcaggtgagatgcgctcatatagaagccaagttctatgaagaagtt
catgacttggaaagaaaatatgcagcattataccagcctctctttgacgagagaagagaa
tttatcaccggtgatgttgaaccaacatctgatatggaatcagaatggcaccgtgaaaat
gaagaggaggagaaattggctggagacaggaaaaataaagtagtcataacagaaaaagca
gcagcaacagctgaagagccaaatcccaaaggaattccagagttctggtttaccatcttt
agaaatgtagatatgctaagtgaattagtccaggaatatgatgaaccaatcttgaaatac
ctgcaggatattaaattccactttcaacccaatgactgctttgccaactcagtcctgaca
aaaacctgcaagatgaaatcagaaccagataaggctgatcccttttcatttgcaggtcct
gagatcatggactgcgatgggtgtactattgactggaagaaaggaaagaatgttactgtc
aaaaccatcaagaaaaagcagaagcgtaagggtccaggcactgttagaacaattaccaaa
caagtatccaatgagtcatttttcaacttcttcaatccactgaaagcatctggggacgga
gaatcactggataaagattctgaattccctctgattttgaaattggacactttttccgtg
agcggaccacaggctgtgctgtacttcgctggggaggccttaaaggatgatgacaatttt
gacgaaggtgaagaagaagaggacgaattagaaggtgatgaggagggagaagatgaggat
gaggtggaaattaatcccaacaaggaacccagccagccggcggaatgcaagcagcagtag

>gi568815597r:116419231_116670972|GENSCAN_predicted_peptide_6|58_aa
MVAGSDAGRALGVLSVVCLLHCFEIATAIAAFSNQHPDQSAAINIEARPFTSKNIRTC

>gi568815597r:116419231_116670972|GENSCAN_predicted_CDS_6|177_bp
atggttgctgggagcgacgcggggcgggccctgggggtcctcagcgtggtctgcctgctg
cactgctttgaaattgccacagccattgcagcctttagcaaccaacaccctgatcagtca
gcagccatcaacattgaggcaagacctttcaccagcaaaaatattaggacttgctga

>gi568815597r:116419231_116670972|GENSCAN_predicted_peptide_7|1240_aa
MKCFFPVLSCLAVLGVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIY
LPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGNSTLLHITDLQARDAGEYEC
HTPSTDKQYFGSYSAKMNLVVIPDSLQTTAMPQTLHRVEQDPLELTCEVASETIQHSHLS
VAWLRQKVGEKPVEVISLSRDFMLHSSSEYAQRQSLGEVRLDKLGRTTFRLTIFHLQPSD
QGEFYCEAAEWIQDPDGSWYAMTRKRSEGAVVNVQPTDKEFTVRLETEKRLHTVGEPVEF
RCILEAQNVPDRYFAVSWAFNSSLIATMGPNAVPVLNSEFAHREARGQLKVAKESDSVFV
LKIYHLRQEDSGKYNCRVTEREKTVTGEFIDKESKRPKNIPIIVLPLKSSISVEVASNAS
VILEGEDLRFSCSVRTAGRPQGRFSVIWQLVDRQNRRSNIMWLDRDGTVQPGSSYWERSS
FGGVQMEQVQPNSFSLGIFNSRKEDEGQYECHVTEWVRAVDGEWQIVGERRASTPISITA
LEMGFAVTAISRTPGVTYSDSFDLQCIIKPHYPAWVPVSVTWRFQPVGTVEFHDLVTFTR
DGGVQWGDRSSSFRTRTAIEKAESSNNVRLSISRASDTEAGKYQCVAELWRKNYNNTWTR
LAERTSNLLEIRVLQPDRMGVSARALRGELSPSQIPQACCHGNTGALVIGIKEPGSLPYL
QTVTKLQVSKSKRTLTLVENKPIQLNCSVKSQTSQNSHFAVLWYVHKPSDADGKLILKTT
HNSAFEYGTYAEEEGLRARLQFERHVSGGLFSLTVQRAEVSDSGSYYCHVEEWLLSPNYA
WYKLAEEVSGRTEVTVKQPDSRLRLSQAQGNLSVLETRQVQLECVVLNRTSITSQLMVEW
FVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQNVAVQDSG
TYSCHVEEWLPSPSGMWYKRAEDTAGQTALTVMRPDASLQVDTVVPNATVSEKAAFQLDC
SIVSRSSQDSRFAVAWYSLRTKAGGKRSSPGLEEQEEEREEEEEEDDDDDDDPTERTALL
SVGPDAVFGPEGSPWEGRLRFQRLSPVLYRLTVLQASPQDTGNYSCHVEEWLPSPQKEWY
RLTEEESAPIGIRVLDTSPTLQSIICSNDALFYFVFFYPFPIFGILIITILLVRFKSRNS
SKNSDGKNGVPLLWIKEPHLNYSPTCLEPPVLSIHPGAID

>gi568815597r:116419231_116670972|GENSCAN_predicted_CDS_7|3723_bp
atgaagtgctttttcccggtgctgagctgtctggctgtgctgggtgtggtgtcagcacag
cggcaggtcaccgttcaggaaggacccttgtaccgcacggagggctcccacatcactatc
tggtgcaatgtgagtggctaccagggaccttctgagcagaatttccagtggtccatttac
ctgccttcgtcgccagagcgagaggtgcagatcgtcagcaccatggactcttccttcccc
tatgccatctacacccagcgcgtccgcggagggaagatcttcatagaaagagtccagggg
aactcaaccctattgcacatcacagatcttcaggcccgggatgccggggagtatgaatgc
cacacacccagcactgataagcaatactttgggagttacagtgcaaagatgaacctagtg
gtgatcccagactccctgcagaccactgccatgccccagactctgcacagagtggagcag
gacccgctggagctcacttgtgaggtggcctcagagaccattcagcacagccacctgtct
gtggcctggctccggcagaaagttggcgagaagcccgtggaggtcatctccctgagccga
gatttcatgcttcactccagcagcgaatatgcccagaggcagagcctgggggaggtgcgg
ctggacaagctggggaggaccaccttccgcctcaccatcttccacctgcagccttctgac
cagggcgaattctactgcgaggccgccgagtggatccaggatccggatgggtcgtggtat
gctatgacccgaaagcgttccgagggagccgtggtcaacgtccagccaactgacaaagaa
ttcactgttcggctggagacagagaagcggctgcacacggtgggcgagccggtggagttc
agatgcatcctggaggctcagaatgttcccgaccgttactttgctgtctcctgggccttc
aacagctcgctcatcgccaccatgggtcctaacgctgtgcctgtcctcaacagcgaattt
gctcaccgggaagccaggggacagcttaaggtggccaaagagagcgacagtgtctttgtg
ctgaagatctaccacctccgccaggaagatagcgggaaatacaactgccgggtgactgag
cgagagaaaaccgtgaccggggaattcattgataaggagagcaagcgtcccaagaacatc
cccatcatagtcctccccctcaagagcagcatctccgtggaggtggccagcaatgccagc
gtcatccttgagggcgaggacctgcgcttctcctgcagtgtccgcacggcaggcaggccg
cagggtcgcttctctgtcatctggcagcttgtggacaggcagaaccgccgcagcaatatc
atgtggctagaccgggatggcaccgtgcagccaggctcgtcctactgggagcgcagcagc
tttgggggcgtccagatggagcaggtgcagcccaactcgttcagcctgggcatcttcaac
agcaggaaggaggacgagggccagtatgaatgccatgtgactgaatgggtgcgggcagtg
gatggcgagtggcagattgttggggagcgccgggccagcactcccatctccatcacagct
cttgaaatgggcttcgcagtcacagccatctcccggacaccgggggtgacctacagcgac
tcctttgacttgcagtgtatcatcaaaccccactaccctgcctgggtccccgtgtcggtg
acatggcggttccagccggtgggcacggtggagttccatgacttggtgaccttcacccgg
gacggaggggtccagtggggggacaggtcctccagcttccgaacccgaactgccatcgag
aaggctgagtccagcaacaacgtccgcctaagcatcagccgagccagtgacacggaagca
ggcaagtaccagtgtgtggcagagctgtggcggaagaactacaacaacacctggacgcga
ctggcggagaggacctccaacctgctggagatcagggtgctgcagccagatagaatgggt
gtcagtgcaagagccctaagaggagagctcagcccctcccagatccctcaggcctgttgt
catggtaacaccggggcacttgttattggcatcaaggagccagggtcactgccctacctg
cagacagtgacaaagctgcaggtgagcaaatcgaagaggaccctcaccctggtggaaaac
aagcccattcagttgaactgctcagtcaagtctcagactagccagaactcccactttgcg
gtgctctggtatgtccacaagccctcggatgccgatggcaagcttatcctgaagaccacc
cacaactccgcctttgaatacggtacttacgccgaggaggagggcctgagagccaggctc
cagtttgagaggcatgtgtcggggggcctgttcagcctcaccgtccagagagccgaggtc
agcgacagcggcagctactactgccacgtggaggagtggctgctgagccccaactacgcc
tggtacaagctggcagaggaggtttctgggcgcacagaagtcactgtgaaacagccagac
agccgcctgaggctcagccaagcccaggggaacctgtcggttctggagacccggcaggta
cagctggagtgtgtggttctcaaccgcaccagcataacctcccagctcatggtggaatgg
tttgtatggaagcccaaccaccctgagcgggagactgtggcccgcttgagccgtgacgcc
accttccactatggagagcaggcagccaagaacaatctgaaggggcggctgcatttggag
agtccttcccccggcgtgtaccgtctcttcatccagaacgtggctgtgcaggacagcggg
acctacagctgccatgtggaggagtggctgcccagccccagtggcatgtggtataagcgg
gcagaggacaccgctgggcagacagctctgacagtcatgcgaccagatgcttccctgcag
gtggacacagtggtccccaatgccacggtctctgagaaggcagctttccagctggactgt
agcatcgtgtcccgctccagccaggactcccgcttcgctgtggcctggtattccctgagg
actaaagctggggggaaaaggagcagccctggcctggaagaacaggaagaggaaagggag
gaggaggaggaggaggacgacgacgacgacgacgacccaacagagcggacggccctgctg
agcgtgggcccagatgctgtctttggcccagagggcagtccttgggagggcaggcttcgc
ttccagaggctctccccggtgctctaccggctcacagtgctgcaggcaagcccccaagat
acaggcaattactcctgccatgtggaggagtggctgcccagccctcagaaggaatggtac
cggctgacggaggaggagtcagcccccatcggcatccgtgttctagatacaagtcccacc
ctccagtccatcatctgctccaacgacgcactcttctacttcgtcttcttctaccctttc
cccatctttggcattcttatcatcaccatccttctggtgcgtttcaagagccggaactcc
agcaagaactctgatgggaagaatggggtgcctctgctgtggatcaaagagccacacctc
aactactcccctacttgcctggagccccctgttctcagtatccatccaggggccatagac
taa