GENSCAN 1.0	Date run:  8-Nov-116	Time: 12:50:36

Sequence gi568815590r:20049676_20280964 : 231289 bp : 44.34% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5016   5177  162  2  0   66   43   117 0.240   4.90
 1.02 Intr +   5800   6022  223  0  1   52   31   115 0.055  -0.10
 1.03 Intr +  24235  24345  111  2  0   20   74    93 0.031   1.45
 1.04 Intr +  42276  42409  134  1  2   81  113    32 0.025   5.36
 1.05 Intr +  54893  54979   87  1  0   59   73    55 0.096   1.27
 1.06 Term +  67960  68316  357  0  0  100   49   141 0.373   5.91
 1.07 PlyA +  69973  69978    6                               1.05

 2.00 Prom +  81118  81157   40                              -1.16
 2.01 Init +  83081  83110   30  1  0   57  106    47 0.511   2.29
 2.02 Term +  87826  88089  264  0  0   68   54   145 0.689   4.61
 2.03 PlyA +  88445  88450    6                               1.05

 3.12 PlyA -  89147  89142    6                               1.05
 3.11 Term -  96201  96088  114  0  0  110   43   139 0.999  10.17
 3.10 Intr -  96865  96791   75  1  0   65   70    59 0.736   1.51
 3.09 Intr -  97716  97583  134  1  2   91   61   225 0.525  20.46
 3.08 Intr -  98047  97928  120  2  0  101   77   186 0.992  19.27
 3.07 Intr -  98395  98332   64  1  1  132   82   -11 0.528   0.99
 3.06 Intr - 100052 100001   52  1  1  109   75     5 0.438   0.21
 3.05 Intr - 101069 100991   79  0  1   98   88    63 0.399   5.91
 3.04 Intr - 106409 106326   84  0  0   92   59    62 0.680   3.49
 3.03 Intr - 107407 107258  150  2  0   26   84    92 0.378   2.73
 3.02 Intr - 112458 112378   81  1  0   90   91    22 0.536   2.31
 3.01 Init - 115269 115194   76  0  1  117  106   100 0.991  15.11
 3.00 Prom - 115473 115434   40                              -7.36

 4.08 PlyA - 116821 116816    6                               1.05
 4.07 Term - 119278 119253   26  2  2   80   42    20 0.285  -5.01
 4.06 Intr - 121819 121730   90  2  0   72  107   112 0.631  11.47
 4.05 Intr - 123453 123361   93  1  0   85  106    75 0.950   8.94
 4.04 Intr - 124769 124686   84  0  0   77   92    41 0.893   3.19
 4.03 Intr - 128818 128760   59  0  2   97   83    29 0.971   1.83
 4.02 Intr - 129809 129446  364  0  1   94   70   278 0.969  20.84
 4.01 Init - 131289 131166  124  0  1   81   79   153 0.948  14.21
 4.00 Prom - 136179 136140   40                              -3.66

 5.00 Prom + 144847 144886   40                              -4.26
 5.01 Init + 147732 147867  136  2  1  101   70   164 0.961  15.20
 5.02 Intr + 154809 154864   56  1  2  126   85    18 0.965   4.00
 5.03 Intr + 159758 159856   99  1  0   93  111    40 0.992   7.11
 5.04 Intr + 160671 160764   94  2  1  104   27   104 0.957   5.44
 5.05 Intr + 160894 160971   78  2  0  109   69    89 0.986   8.62
 5.06 Intr + 161502 161641  140  1  2    5   78    88 0.906  -0.32
 5.07 Intr + 161977 162078  102  0  0   64   78    32 0.498   0.17
 5.08 Intr + 162427 162524   98  0  2   54  111    77 0.985   5.41
 5.09 Intr + 163107 163230  124  0  1   71  107   107 0.998  11.49
 5.10 Intr + 165143 165293  151  1  1   56  115    30 0.801   2.24
 5.11 Intr + 166738 166820   83  2  2   80   84    60 0.940   4.16
 5.12 Intr + 168478 168607  130  0  1  103   90   154 0.992  17.37
 5.13 Intr + 175114 175205   92  2  2    9  115    33 0.011  -2.19
 5.14 Term + 181077 181340  264  2  0   13   41   197 0.280   3.01
 5.15 PlyA + 190491 190496    6                               1.05

 6.06 PlyA - 190521 190516    6                               1.05
 6.05 Term - 200688 200047  642  0  0   94   55  1399 0.999 131.37
 6.04 Intr - 203910 203107  804  0  0  115   78  1212 0.992 114.55
 6.03 Intr - 205556 205162  395  0  2   90  103   477 0.019  43.77
 6.02 Intr - 217635 217492  144  1  0   72   78   102 0.847   7.85
 6.01 Init - 220201 220114   88  1  1   63   72   114 0.662   8.10

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 205506 205162  345  0  0  107  103   508 0.878  51.41


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:20049676_20280964|GENSCAN_predicted_peptide_1|357_aa
MLEEPFSLPLHRGSPSLGWSRPEPVPSACGEVWRERHEWELGLHTMLVGQCEFWVCKCTN
QHSVSSSGFVNTPIHTVYLANLVGTWRTFVSSSGIVNAPISTLSKRTNQLSIKQTNRLSV
KWTNQQDVELRDQRESKIEGLEEVKGNLIEKGQGILSEELGSKVRKSSNSILPFNQAKNL
EIVLLFLFLSYPTSIQPGNLVDSLFEYIQKSIQYLSPAVSDHICTQLLQDLSTSSGIFAE
MPLEWEKLLLPQIAGEEREFLIFLIEAHGASVLEIQYTSVMALEKRTQDPQDPMARDDKS
LWVYRHFPYVLRHVCMHLLAYFSILKASCYVLVLKQPIIVKTNFCTKRMNRQLRKSE

>gi568815590r:20049676_20280964|GENSCAN_predicted_CDS_1|1074_bp
atgcttgaggagcccttcagcctgccgctgcaccgcgggagcccttctctgggctggtcg
aggccggagccggttccctcagcttgcggggaggtgtggagggagaggcacgagtgggaa
ctggggctgcacacgatgcttgtgggccagtgcgagttctgggtttgtaaatgcaccaat
cagcactctgtgtctagctcagggtttgtaaatacaccaatccacactgtgtacctagct
aatctagtggggacgtggagaacttttgtgtctagctcagggattgtaaacgcaccaatc
agcaccctgtcaaaacggaccaatcagctctccataaaacagaccaatcggctctctgta
aaatggaccaatcagcaggatgtggaactacgtgatcaaagggaatccaagattgaaggg
ttagaggaagtgaaaggaaatttaattgagaaaggacagggcatccttagtgaagaattg
ggatccaaagtcagaaaaagcagtaactccattcttccgtttaatcaggctaaaaaccta
gaaattgtgctgctttttctctttctctcatatcccacatccatccaaccaggaaatctt
gttgactctctctttgaatatatccagaagtctattcagtatctgagcccagcagtcagt
gaccacatctgcacccagctcctgcaggacctcagcacctcctcaggaatctttgcagaa
atgcctcttgaatgggagaagctgctgctcccccaaattgctggggaagaaagggagttc
ctgatctttcttattgaggctcatggagcttctgtcctggagattcagtatacttcagta
atggctctggagaagagaactcaggatcctcaagacccaatggctcgtgatgataaaagc
ctttgggtctaccgacattttccctacgtgctcagacatgtctgcatgcatttattggca
tatttttccatactcaaagcaagttgctatgtgttagtactaaagcaacccataatagta
aaaacgaatttctgcaccaagagaatgaatcggcagctgagaaagtcagagtga

>gi568815590r:20049676_20280964|GENSCAN_predicted_peptide_2|97_aa
MTLAVAMAVWLSEELLEDILQQKMKMHQEQESEFRKLESSLGEQHKKTQPKAHAGGSENE
SRGHRAGNKTYRQMTCYDQKQIVRGLHKSVSGLENNG

>gi568815590r:20049676_20280964|GENSCAN_predicted_CDS_2|294_bp
atgacactggcagtggctatggctgtctggctatctgaggaattattggaggacatactc
caacagaagatgaaaatgcaccaagaacaagaaagtgaattcaggaaactggagtccagt
ttaggagagcaacacaagaaaacccagcccaaagcccatgcaggtggctctgagaatgaa
tccagaggacacagggctggaaacaaaacgtaccgacagatgacctgctatgatcagaaa
caaatagtcaggggtcttcataaatcagttagtggacttgagaacaatgggtga

>gi568815590r:20049676_20280964|GENSCAN_predicted_peptide_3|342_aa
MGVAILEPTLPIWMMQTMCSPKWQLVQCPSTVPAMAQVGPDVAWPPTLEGASGTSAYRIS
YAHRCSSPAPVFPPFLTTKKGVQAAGLWWSITSVPNIAFAIRGPVPVLKYWVISSKALAK
ELRLGDCIAQGLAFLPASVSYLIGTNLFGVLANKMGRWLCSLIGMLVVGTSLLCVPLAHN
IFGLIGPNAGLGLAIGMVDSSMMPIMGHLVDLRHTSVYGSVYAIADVAFCMGFAIGPSTG
GAIVKAIGFPWLMVITGVINIVYAPLCYYLRSPPAKEEKLHKHPEGLMGLGYRQRLLKGT
KEDMKAILSQDCPMETRMYATQKPTKEFPLGEDSDEEPDHEE

>gi568815590r:20049676_20280964|GENSCAN_predicted_CDS_3|1029_bp
atgggggtggccatcctggagcccacactgcccatctggatgatgcagaccatgtgctcc
cccaagtggcagctggtgcagtgcccctcaactgtgccagccatggctcaagtgggccca
gatgtggcctggcctcccactctggagggtgcaagtgggacatctgcttaccggattagt
tacgctcaccgatgtagcagtcctgcacctgttttcccgcctttcttgaccacaaagaaa
ggagtccaggctgctggattatggtggtccattaccagcgtgcccaacattgcctttgcg
atcaggggcccagttccagtgttaaagtactgggtcatcagttctaaggccctcgccaag
gagctgaggcttggagattgtattgcacagggtctagctttcttgcctgccagtgtgtcc
tacctcattggcaccaacctctttggtgtgttggccaacaagatgggtcggtggctgtgt
tccctaatcgggatgctggtagtaggtaccagcttgctctgtgttcctctggctcacaat
atttttggtctcattggccccaatgcagggcttggccttgccataggcatggtggattct
tctatgatgcccatcatggggcacctggtggatctacgccacacctcggtgtatgggagt
gtctacgccatcgctgatgtggctttttgcatgggctttgctataggtccatccaccggt
ggtgccattgtaaaggccatcggttttccctggctcatggtcatcactggggtcatcaac
atcgtctatgctccactctgctactacctgcggagccccccggcaaaggaagagaagctt
cacaaacatcctgagggcctgatgggtttgggataccgacagaggctgctcaagggaaca
aaagaagacatgaaggctattctgagtcaggactgccccatggagacccggatgtatgca
acccagaagcccacgaaggaatttcctctgggggaggacagtgatgaggagcctgaccat
gaggagtag

>gi568815590r:20049676_20280964|GENSCAN_predicted_peptide_4|279_aa
MLRTILDAPQRLLKEGRASRQLVLVVVFVALLLDNMLFTVVVPIVPTFLYDMEFKEVNSS
LHLGHAGSSPHALASPAFSTIFSFFNNNTVAVEESVPSGIAWMNDTASTIPPPATEAISA
HKNNCLQGTGFLEEEITRVGVLFASKAVMQLLVNPFVGPLTNRIGYHIPMFAGFVIMFLS
TVMFAFSGTYTLLFVARTLQGIGSSFSSVAGLGMLASVYTDDHERGRAMGTALGGLALGL
LVGAPFGSVMYEFVGKSAPFLILAFLALLDGDLLSIDDS

>gi568815590r:20049676_20280964|GENSCAN_predicted_CDS_4|840_bp
atgctccggaccattctggatgctccccagcggttgctgaaggaggggagagcgtcccgg
cagctggtgctggtggtggtattcgtcgctttgctcctggacaacatgctgtttactgtg
gtggtgccaattgtgcccaccttcctatatgacatggagttcaaagaagtcaactcttct
ctgcacctcggccatgccggaagttccccacatgccctcgcctctcctgccttttccacc
atcttctccttcttcaacaacaacaccgtggctgttgaagaaagcgtacctagtggaata
gcatggatgaatgacactgccagcaccatcccacctccagccactgaagccatctcagct
cataaaaacaactgcttgcaaggcacaggtttcttggaggaagagattacccgggtcggg
gttctgtttgcttcaaaggctgtgatgcaacttctggtcaacccattcgtgggccctctc
accaacaggattggatatcatatccccatgtttgctggctttgttatcatgtttctctcc
acagttatgtttgctttttctgggacctatactctactctttgtggcccgaacccttcaa
ggcattggatcttcattttcatctgttgcaggtcttggaatgctggccagtgtctacact
gatgaccatgagagaggacgagccatgggaactgctctggggggcctggccttggggttg
ctggtgggagctccctttggaagtgtaatgtacgagtttgttgggaagtctgcacccttc
ctcatcctggccttcctggcactactggatggagatttgttatccattgatgattcttga

>gi568815590r:20049676_20280964|GENSCAN_predicted_peptide_5|548_aa
MALRAMRGIVNGAAPELPVPTGGPAVGAREQALAVSRNYLSQPRLTYKTVSGVNGPLVIL
DHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILR
TPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGM
NSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMET
ARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDM
SSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDD
ITHPIPDLTGYITEGQIYVDRQLHNRQYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFL
QKFERNFIAQVALKCGPSTKEASLVIYLLDVHCSDKTWKVQPCPIRERVPFPRGEAPGKA
ALGITPRQQLLMPERGSPPSPAVAAPLDPEAQPPLLSLVTDNAYRLCHQLFQSKNYLSAQ
CPKKRERA

>gi568815590r:20049676_20280964|GENSCAN_predicted_CDS_5|1647_bp
atggcgctgcgggcgatgcgggggattgtcaacggggccgcacccgagctacccgtgccc
accggtgggccggcggtgggagctcgggagcaggcgctggcagtcagtcggaactacctc
tcccagcctcgcctcacatacaagacagtatctggagtcaatggtccactagtgatctta
gatcatgttaagtttcccaggtatgctgaaattgtccatttgaccttaccggatggcaca
aagagaagtgggcaagttctggaagttagtggttccaaggcagtagttcaggtatttgaa
gggacttcaggtatagatgctaagaaaacgtcctgtgagtttactggggatattctccga
acaccggtgtctgaggatatgcttggtcgggtattcaatggatcgggaaaacccattgac
agaggtcctgttgtactggccgaagacttccttgatatcatgggtcagccaatcaaccct
caatgtcgaatctacccagaggaaatgattcagactggcatttcggccatcgatgggatg
aacagtattgctagggggcagaaaattcctatcttctctgctgctgggctaccacacaat
gagattgcagctcagatctgtcgccaggctggtttggtaaagaaatccaaagatgtagta
gactacagtgaggaaaattttgcaattgtatttgctgctatgggtgtaaacatggaaact
gcccggttcttcaaatctgactttgaagaaaatggctcaatggacaatgtctgcctcttt
ttgaacttggctaatgacccaaccattgagcgaattatcactcctcgcctggctctaacc
acagctgaatttctggcgtaccaatgtgagaaacatgtattggttattctaacagacatg
agttcttatgctgaagcacttcgagaggtttcagcagccagggaagaggtacctggtcga
cgaggttttccaggttacatgtatacagatttagccacgatatatgaacgcgctgggcga
gtggaagggagaaacggctcgattactcaaatccctattctaaccatgcctaatgatgat
atcactcaccccatcccagacttgactggctacattacagaggggcagatctatgtggac
agacagctgcacaacagacagtatgcgtgctatgctattggaaaggatgtgcaagccatg
aaagctgtcgttggagaagaagcccttacctcagatgatcttctctacttggaatttctg
cagaagtttgagaggaacttcattgctcaggtcgcactcaagtgtggccctagcaccaag
gaagcttcattagtgatttacctactagatgttcattgttcagataaaacttggaaagtg
cagccctgtcccatcagggagcgagtgcccttcccccgaggagaagctccagggaaagca
gccctgggcatcacccccaggcagcagctgctcatgcccgagagagggagcccaccttcc
ccagctgtggctgctcccttagaccccgaggcccagccaccactgctcagtttggtcact
gacaatgcctacagattgtgtcaccagttattccagagcaagaattacctctcagctcag
tgcccgaaaaaacgagagagggcttga

>gi568815590r:20049676_20280964|GENSCAN_predicted_peptide_6|690_aa
MEDPGLESEEDHSVDLGTVKEDQNFGERGAPNMETRSTLLGSQHPGDKEAGGKEHKDDAR
NQGTRQPRQHPPPGCLRAFPRPCPALPHPQPRVTMGSVSSLISGHSFHSKHCRASQYKLR
KSSHLKKLNRYSDGLLRFGFSQDSGHGKSSSKMGKSEDFFYIKVSQKARGSHHPDYTALS
SGDLGGQAGVDFDPSTPPKLMPFSNQLEMGSEKGAVRPTAFKPVLPRSGAILHSSPESAS
HQLHPAPPDKPKEQELKPGLCSGALSDSGRNSMSSLPTHSTSSSYQLDPLVTPVGPTSRF
GGSAHNITQGIVLQDSNMMSLKALSFSDGGSKLGHSNKADKGPSCVRSPISTDECSIQEL
EQKLLEREGALQKLQRSFEEKELASSLAYEERPRRCRDELEGPEPKGGNKLKQASQKSQR
AQQVLHLQVLQLQQEKRQLRQELESLMKEQDLLETKLRSYEREKTSFGPALEETQWEVCQ
KSGEISLLKQQLKESQTEVNAKASEILGLKAQLKDTRGKLEGLELRTQDLEGALRTKGLE
LEVCENELQRKKNEAELLREKVNLLEQELQELRAQAALARDMGPPTFPEDVPALQRELER
LRAELREERQGHDQMSSGFQHERLVWKEEKEKVIQYQKQLQQSYVAMYQRNQRLEKALQQ
LARGDSAGEPLEVDLEGADIPYEDIIATEI

>gi568815590r:20049676_20280964|GENSCAN_predicted_CDS_6|2073_bp
atggaagaccctggtctagagagtgaagaggaccacagtgtggacctggggacagtgaag
gaagatcagaattttggagagaggggagcccccaacatggagaccaggtctacactcttg
ggctctcagcaccctggggacaaagaagcaggaggaaaagaacacaaggacgatgccaga
aaccaggggacccgacagcccagacagcatcctccaccagggtgcctgagagcctttcca
agaccctgcccggccctgccccatcctcagccccgagtcaccatgggcagcgtcagtagc
ctcatctccggccacagcttccacagcaagcactgccgggcttcgcagtacaagctgcgc
aagtcctcccacctcaagaagctcaaccggtattccgacgggctgctgaggtttggcttc
tcccaggactccggtcacggcaagtccagctccaaaatgggcaagagcgaagacttcttc
tacatcaaggtcagccagaaagcccggggctcccatcacccagattacacggcactgtcc
agcggggatttagggggccaggctggggtggactttgacccgtccacaccccccaagctc
atgcccttctccaatcagctagaaatgggctccgagaagggtgcagtgaggcccacagcc
ttcaagcctgtgctgccacggtcaggagccatcctgcactcctccccggagagtgccagc
caccagctgcaccccgcccctccagacaagcccaaggagcaggagctgaagcctggcctg
tgctctggggcgctgtcagactccggccggaactccatgtccagcctgcccacacacagc
accagcagcagctaccagctggacccgctggtcacacccgtgggacccacaagccgtttt
gggggctccgcccacaacatcacccagggcatcgtcctccaggacagcaacatgatgagc
ctgaaggctctgtccttctccgacggaggtagcaagctgggccactcgaacaaggcagac
aagggcccctcgtgtgtccgctcccccatctccacggacgagtgcagcatccaggagctg
gagcagaagctgttggagagggagggcgccctccagaagctgcagcgcagctttgaggag
aaggagcttgcctccagcctggcctacgaggagcggccgcggcgctgcagggacgagctg
gagggcccggagcccaaaggcggcaacaagctcaagcaggcctcgcagaagagccagcgc
gcgcagcaggtcctgcacctgcaggtactgcagcttcagcaggagaagcggcagctccgg
caggagctcgagagcctcatgaaggagcaggacctgctggagaccaagctcaggtcctac
gagagggagaagaccagcttcggccccgcgctggaggagacccagtgggaggtgtgccag
aagtcaggcgagatctccctcctgaagcagcagctgaaggagtcccagacggaggtgaac
gccaaggctagcgagatcctgggtctcaaggcacagctgaaggacacgcggggcaagctg
gagggcctggagctgaggacccaggacctggagggcgccctgcgcaccaagggcctggag
ctggaggtctgtgagaatgagctgcagcgcaagaagaacgaggcggagctgctgcgggag
aaggtgaacctgctggagcaggagctgcaggagctgcgggcccaggccgccctggcccgc
gacatggggccgcccaccttccccgaggacgtccctgccctgcagcgggagctggagcgg
ctgcgggccgagctgcgggaggagcggcaaggccatgaccagatgtcctcgggcttccag
catgagcggctcgtgtggaaggaggagaaggagaaggtgattcagtaccagaaacagctg
cagcagagctacgtggccatgtaccagcggaaccagcgcctggagaaggccctgcagcag
ctggcacgtggggacagcgccggggagcccttggaggttgacctggaaggggctgacatc
ccctacgaggacatcatagccactgagatctga