GENSCAN 1.0	Date run:  7-Nov-116	Time: 20:36:11

Sequence gi568815597r:235350209_235604252 : 254044 bp : 44.15% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  12212  12314  103  0  1   83   36    61 0.012  -0.37
 1.02 Intr +  17171  17296  126  2  0   84   99    45 0.080   4.99
 1.03 Intr +  29811  29941  131  0  2   83  115   115 0.435  14.04
 1.04 Term +  30016  30029   14  2  2   77   43    17 0.600  -5.54
 1.05 PlyA +  32058  32063    6                               1.05

 2.04 PlyA -  32855  32850    6                               1.05
 2.03 Term -  34434  33809  626  1  2   46   42   287 0.716  14.45
 2.02 Intr -  35064  34771  294  1  0   39   20   166 0.053   1.88
 2.01 Init -  36711  36411  301  0  1   88   -8   241 0.133  11.91
 2.00 Prom -  37438  37399   40                              -7.76

 3.00 Prom +  46287  46326   40                              -3.76
 3.01 Init +  58996  59036   41  0  2   85   62    39 0.704   0.66
 3.02 Intr +  64225  64410  186  1  0   93  115   160 0.978  18.00
 3.03 Term +  69265  69424  160  1  1   48   32    97 0.235  -2.49
 3.04 PlyA +  75023  75028    6                               1.05

 4.00 Prom +  80837  80876   40                              -4.86
 4.01 Init +  82777  82963  187  0  1   85   92   284 0.967  27.72
 4.02 Intr +  83851  84003  153  2  0   68   66    56 0.509   1.44
 4.03 Intr +  86336  86400   65  0  2  101   71    51 0.702   3.14
 4.04 Intr +  87114  87266  153  2  0   75   83   181 0.775  16.57
 4.05 Term +  91606  91659   54  0  0   88   48    39 0.406  -2.54
 4.06 PlyA +  93636  93641    6                               1.05

 5.15 PlyA -  94027  94022    6                               1.05
 5.14 Term -  95876  95810   67  1  1   46   49    84 0.229  -2.29
 5.13 Intr - 100132 100032  101  1  2   80   62    74 0.290   2.91
 5.12 Intr - 102938 102882   57  2  0   24  111    70 0.774   1.98
 5.11 Intr - 104101 103948  154  0  1   36   91   112 0.703   6.37
 5.10 Intr - 105476 105351  126  1  0  104  106    44 0.939   7.59
 5.09 Intr - 108578 108395  184  0  1   72   78   130 0.790   9.25
 5.08 Intr - 115506 115428   79  0  1   97  110   -16 0.590   0.62
 5.07 Intr - 120752 120642  111  2  0   48   98    53 0.650   2.88
 5.06 Intr - 129941 129846   96  2  0   64   77   131 0.895   9.81
 5.05 Intr - 134307 134114  194  1  2   47   69   251 0.991  18.31
 5.04 Intr - 139060 138960  101  0  2   40  111    55 0.861   2.75
 5.03 Intr - 144620 144473  148  0  1  112   90    57 0.897   7.59
 5.02 Intr - 153653 153480  174  0  0   73   18    87 0.459   0.11
 5.01 Init - 154044 153933  112  0  1   26   94   265 0.986  19.28
 5.00 Prom - 167919 167880   40                              -5.46

 6.00 Prom + 174318 174357   40                              -3.96
 6.01 Init + 181214 181234   21  1  0   99   50    17 0.525  -2.27
 6.02 Term + 183728 183796   69  1  0  119   39   111 0.919   7.24
 6.03 PlyA + 184170 184175    6                               1.05

 7.06 PlyA - 184182 184177    6                               1.05
 7.05 Term - 188609 188419  191  0  2   41   52   137 0.411   3.01
 7.04 Intr - 194242 194211   32  0  2  116   74    16 0.621   0.77
 7.03 Intr - 200052 199876  177  2  0   58   75   171 0.880  11.83
 7.02 Intr - 202029 201923  107  0  2  144  -57   115 0.360   1.61
 7.01 Init - 202707 202705    3  0  0   71  101     0 0.249  -0.40
 7.00 Prom - 206947 206908   40                              -1.96

 8.00 Prom + 213871 213910   40                              -1.86
 8.01 Init + 216475 216528   54  0  0   84   59    75 0.328   5.48
 8.02 Intr + 225024 225092   69  2  0   62   97    32 0.065   0.88
 8.03 Intr + 241398 241609  212  2  2   47   74   133 0.348   5.51
 8.04 Intr + 243567 243615   49  0  1   66   89    52 0.322   1.78
 8.05 Intr + 244742 244793   52  1  1   76   81    45 0.314   1.08
 8.06 Term + 244947 244966   20  1  2  122   50    -9 0.275  -2.82
 8.07 PlyA + 246374 246379    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:235350209_235604252|GENSCAN_predicted_peptide_1|124_aa
XLPLSTRQIKQELAEEYETTKSPVPPAYSLQLLLSSRTSLRWRRDFLQHFRPEPQASLLG
SWLEGLLLGTPGVSAGRSHILDSGYIIMSDTLTADVIGRRVEVNGEHATVRFAGVVPPVA
AVSV

>gi568815597r:235350209_235604252|GENSCAN_predicted_CDS_1|375_bp
nggttacccctaagcaccagacagatcaaacaggagcttgctgaggagtatgagaccact
aagagtccagtgcccccagcctacagcctccaactcctcctaagcagccgtacctcactc
cggtggaggcgggacttcctacagcacttccggccagagcctcaagcttcgctgctgggc
agttggctggaggggctgctgctgggaacacctggagtctccgcgggcagatctcatatt
ttggattctggatatattataatgagtgacactttgacagcggatgtcattggtcgaaga
gttgaagttaatggagaacatgcaacagtacgttttgctggtgttgtccctcccgtggca
gctgtttctgtgtaa

>gi568815597r:235350209_235604252|GENSCAN_predicted_peptide_2|406_aa
MGKKQSRKTGNSKKQSASPPPKEHSSSPATEQSWTENDFDKLREEGFRRSNYSELQEEIQ
TKGKEVKNFEKNLDECITRITNTEKCLKELMELKAKAQELPPHHTYSKIDHIVGSKALLS
KCKRSDIITNCLSDHSAIKLEFRIKKLTQNRSTTWKLNNLLLNDYWVHNEMKTEIKMFFE
TNENKDTTYQNLWDNIQSKIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVE
SLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEEQVPFLLKLFQSIEKEGILPN
SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFI
PGMQGWFNICKSINVIQHINRTKDKNHMIISIDAEKAFDKIQQPSC

>gi568815597r:235350209_235604252|GENSCAN_predicted_CDS_2|1221_bp
atggggaaaaaacagagcagaaaaactggaaactctaaaaagcagagcgcctctcctcct
ccaaaggaacacagctcctcaccagcaacggaacaaagctggacagagaatgactttgac
aaattgagagaagaaggcttcagacgatcaaactactccgagctacaggaggaaattcaa
accaaaggcaaagaagttaaaaactttgaaaaaaatttagacgaatgtataactagaata
accaatacagagaagtgcttaaaggagctgatggagctgaaagccaaggctcaagaacta
ccaccacaccacacctattccaaaattgaccacatagttggaagtaaagctctcctcagc
aaatgtaaaagatcagacattataacaaactgtctctcagaccacagtgcaatcaaacta
gaattcaggattaagaaactcactcaaaaccgctcaactacatggaaactgaacaacctg
ctcctgaatgactactgggtacataatgaaatgaagacagaaataaagatgttctttgaa
accaacgagaacaaagacacaacataccagaatctctgggacaacattcaaagcaaaata
caaactaccatcagagaatactacaaacacctctacgcaaataaactagaaaatctagaa
gaaatggataaattcctcgacacatacaccctcccaagactaaaccaggaagaagttgaa
tctctgaatagaccaataacaggctctgaaattgtggcaataatcaatagcttaccaacc
aaaaagagtccaggaccagatggattcacagccgaattctaccagaggtacaaggaggaa
caggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccctaac
tcattttatgaggccagcatcatcctgataccaaagccaggcagagacacaaccaaaaaa
gagaattttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaaatactg
gcaaaccgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatc
cctgggatgcaaggctggttcaatatatgcaaatcaataaatgtaatccagcatataaac
agaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaa
attcaacaaccttcatgctaa

>gi568815597r:235350209_235604252|GENSCAN_predicted_peptide_3|128_aa
MGQDDDFTSSMCNWHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGN
KPVETIGFDSIMKQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPSILFTESLLLESDYG
FYTCARDC

>gi568815597r:235350209_235604252|GENSCAN_predicted_CDS_3|387_bp
atgggtcaggatgatgattttaccagcagcatgtgtaattggcacccgacaggaggatcc
tttattcgtccgaacaaggtaaattttggaacagactttcttactgcaattaagaaccgc
tatgtgttagaagatggaccagaggaagatagaaaagagcaaattgttacaattggaaat
aaacctgtggagactatcggttttgactctattatgaaacagcaaagtcagctgagcaag
ttgcaagaagtttctctgaggaactgtgcagtaagttgtgctggtgaaaaaggaggagtt
gctgaagcatgtcctagtatccttttcaccgagagcttgttattggaatctgactatgga
ttttatacctgtgccagagactgctaa

>gi568815597r:235350209_235604252|GENSCAN_predicted_peptide_4|203_aa
MQKDASKFVDLCVLQKCSTSNCIISAKDHTSMRMNVAKASEVTGRFNSQFKTCAICRTVC
RMGLKQSYELSVRHLFAETVTELNSCGGSYEHPGRNSQQRPPEPEPSFSSRCCGCKTSMF
PSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLK
TLNKCENMVHLKIGNSKHSNHLC

>gi568815597r:235350209_235604252|GENSCAN_predicted_CDS_4|612_bp
atgcagaaagacgccagcaagttcgtggatctgtgcgtgctgcagaaatgctccaccagc
aactgcatcatcagtgccaaggaccacacatccatgcggatgaacgtggccaaggccagt
gaggtcacgggcaggtttaacagccagtttaaaacctgtgctatctgcaggactgtttgc
aggatgggcctgaaacagtcttatgaactgtccgtgaggcacttgtttgctgaaacagta
actgagctgaattcttgtggtggttcctatgaacacccgggaagaaacagccagcagagg
ccgcctgagcctgaaccgagtttctcttccaggtgctgcgggtgcaaaacgtccatgttc
ccatccttgaagtacctggtagtaaacgacaatcagatatcacaatggtcgtttttcaat
gagctagagaagttaccaagtctacgggctttgtcctgcctaagaaaccccctgaccaaa
gaggacaaagaagcagagacggcgcgactactcattatcgccagcattggccagctgaag
acgctgaacaaatgtgagaatatggtgcacctgaagattgggaactcaaaacacagcaac
cacttatgctga

>gi568815597r:235350209_235604252|GENSCAN_predicted_peptide_5|567_aa
MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPAGLVSDVRRRPFARERNLVCPSAA
SAFCFGSSGSEVVFFPPKLLVFLGQDWGFSAVDNVYQLALFPQWKSTHYDVVVGVLSARN
NHELRNVIRSTWMRHLLQHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNPVL
NQEIEAFSLSEDTSSGLPEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLYQA
EQEEALFIARFSPPSCGVQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHKVT
VNDGGGVLRVITAGEGALPHEFLEGVEGVAGGFIYTIQEGDALLHNLHSRPQRLIDHIRN
LHEEDALLKEESSIYDDIVFVDVVDTYRNVPAKLLNFYRWTVETTSFNLLLKTDDDCYID
LEAVFNRIVQKNLDGPNFWWGKLNWAVDRTGKWQELEYPSPAYPAFACGSGYVISKDIVK
WLASNSGRLKTYQGEDVSMGIWMAAIGPKRYQDSLWLCEKTCETGMLSSPQYSPWELTEL
WKLKERHTLPSMAATCGTEHLESGEYD

>gi568815597r:235350209_235604252|GENSCAN_predicted_CDS_5|1704_bp
atgcgaaactggctggtgctgctgtgcccgtgtgtgctcggggccgcgctgcacctctgg
ctgcggctgcgctccccgccgcccgcctgcgcctccggggccggccctgcaggcctggtt
agtgatgtccgacgccgcccgttcgcccgggagcggaacctcgtgtgcccttcagccgcc
agcgctttctgctttgggagctctggctctgaagttgttttcttcccccccaagttgttg
gtctttctcggtcaagactggggttttagtgccgtggataatgtgtatcagttggcctta
tttcctcagtggaaatctactcactatgatgtggtagttggcgtgttgtcagctcgcaat
aaccatgaacttcgaaacgtgataagaagcacctggatgagacatttgctacagcatccc
acattaagtcaacgtgtgcttgtgaagttcataataggtgctcatggctgtgaagtgcct
gtggaagacagggaggatccttattcctgtaaactactcaacatcacaaatccagttttg
aatcaggaaattgaagcgttcagtctgtccgaagacacttcatcggggctgcctgaggat
cgagttgtcagcgtgagtttccgagttctctaccccatcgttattaccagtcttggagtg
ttctacgatgccaatgatgtgggtttccagaggaacatcactgtcaaactttatcaggca
gaacaagaggaggccctcttcattgctcgcttcagtcctccaagctgtggtgtgcaggtg
aacaagctgtggtacaagcccgtggaacaattcatcttaccagagagctttgaaggtaca
atcgtgtgggagagccaagacctccacggccttgtgtcaagaaatctccacaaagtgaca
gtgaatgatggagggggagttctcagagtcattacagctggggagggtgcattgcctcat
gaattcttggaaggtgtggagggagttgcaggtggttttatatatactattcaggaaggt
gatgctctcttacacaaccttcattctcgccctcaaagacttattgatcatataaggaat
ctccatgaggaagatgccttactgaaggaggaaagcagcatctatgatgatattgttttt
gtggatgttgtcgacacttatcgtaatgttcctgcaaaattattgaacttctatagatgg
actgtggaaacaacgagcttcaatttgttgctgaagacagatgatgactgttacatagac
ctcgaagctgtatttaataggattgtccaaaagaatctggatgggcctaatttttggtgg
ggaaaactgaattgggcagttgaccgaaccggaaagtggcaggagttggagtacccgagc
cccgcttaccctgcctttgcatgtgggtcaggatatgtgatctccaaggacatcgtcaag
tggctggcaagcaactcggggaggttaaagacctatcagggtgaagatgtaagcatgggc
atctggatggctgccataggacctaaaagataccaggacagtctgtggctgtgtgagaag
acctgtgagacaggaatgctgtcttctcctcagtattctccgtgggaactgacggaactg
tggaaactgaaggaacgccatacactgcccagtatggcagccacatgtggtactgagcac
ctggaaagcggcgagtatgactga

>gi568815597r:235350209_235604252|GENSCAN_predicted_peptide_6|29_aa
MGLGPGPPTQCEDEDEDEDFYDDPLSLNE

>gi568815597r:235350209_235604252|GENSCAN_predicted_CDS_6|90_bp
atggggctggggcctggccctcctactcaatgtgaagatgaagatgaggatgaagacttt
tatgatgatccactttcacttaatgaatag

>gi568815597r:235350209_235604252|GENSCAN_predicted_peptide_7|169_aa
MVSQAAADLLAYCEAHVREDPLIIPVPASENPFREKKRKPYSGSLRKVIHGCPKERLDID
ELALGLSKINLKVLPKPNSYDPDERGEYTVGAELFVPQTHTGPRPGASLIHNLSEEQDIR
KIGGLFKTLPLTSSSHFISSLTTYRYAFLTGFYSKDLIIEPANTSYTNA

>gi568815597r:235350209_235604252|GENSCAN_predicted_CDS_7|510_bp
atggtctcccaggcagctgcggacctcctggcctactgtgaagctcacgtgcgggaagat
cctctcatcattccagtgcctgcatcagaaaacccctttcgcgagaagaagaggaagccg
tattctggtagtttaaggaaggtgattcatggatgccccaaggaaaggctagacatcgat
gaattagctcttggattgtctaagatcaacctgaaggtcctacctaaaccaaactcatat
gatcccgatgaaagaggagaatacacagtgggagcagagctctttgtgccacagacccat
actggtccgcggcctggggcgtccctcatccataacctcagtgaagaacaagacatccga
aaaataggagggctattcaagactctacccctcacttcctcctcccattttatcagcagc
ctcacaacttacaggtatgccttcctcacaggcttttactccaaagacctcattattgaa
cctgcaaacacatcatacaccaatgcctga

>gi568815597r:235350209_235604252|GENSCAN_predicted_peptide_8|151_aa
MAVLSNENGDATSAEDLGWQKAIRIQYAPPLPMGSHPHKPITFMRLHIPPGPKKKNGSRN
REELQQISTRTLATGNTDWALGFPEDEARGKRDHLLRGGTWGHVLTQLFLPSGFVVSLAS
GVKPQTFVLSLSLKGPSSLNCEWGGSAHPFT

>gi568815597r:235350209_235604252|GENSCAN_predicted_CDS_8|456_bp
atggcggtgctatctaatgagaacggggatgctaccagtgctgaagatctgggttggcag
aaagcaatacgcattcagtatgctcctccacttcccatggggtcacatccgcataaaccc
atcacattcatgcgtctgcacatcccacctggacccaagaagaaaaatggaagtaggaac
agagaggagctgcaacaaatctccacacgcacactggctaccggcaacactgactgggct
ctcggctttccagaagatgaggcaagggggaaaagggaccatttgcttaggggtggcacc
tggggccacgtgctcacacagctctttcttcccagtgggtttgtggtctcgctggcttca
ggagtgaagccgcagaccttcgtgctatccctgagcctgaagggacccagcagcttaaac
tgcgagtggggaggaagtgcacatccattcacatag