GENSCAN 1.0	Date run:  7-Nov-116	Time: 18:41:45

Sequence gi568815583f:66603259_66881532 : 278274 bp : 49.60% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   6459   6498   40                               2.14
 1.01 Init +   7569   7576    8  2  2  103   91     0 0.460   2.30
 1.02 Intr +  16162  16275  114  1  0   59   85    53 0.344   1.66
 1.03 Intr +  18703  18789   87  1  0   88   41    63 0.256   0.69
 1.04 Intr +  19110  19203   94  0  1   70   49    60 0.328   0.27
 1.05 Intr +  26540  26624   85  1  1  105   23    96 0.400   4.19
 1.06 Intr +  32855  32954  100  0  1   93   98    34 0.489   4.07
 1.07 Term +  38653  38788  136  1  1   66   46    80 0.131  -0.91
 1.08 PlyA +  39946  39951    6                              -0.45

 2.08 PlyA -  40315  40310    6                               1.05
 2.07 Term -  40878  40713  166  2  1   77   42   110 0.201   2.69
 2.06 Intr -  49368  49226  143  0  2   76   32   149 0.443   7.25
 2.05 Intr -  53021  52892  130  1  1  120   47   -14 0.018  -1.60
 2.04 Intr -  65714  65464  251  2  2   77   35   125 0.050   2.34
 2.03 Intr -  67273  67209   65  2  2   91   42    63 0.452   0.44
 2.02 Intr -  74450  74274  177  0  0   56   84    56 0.398   1.89
 2.01 Init -  77104  77095   10  1  1   80  115    -2 0.473   2.32
 2.00 Prom -  80038  79999   40                              -2.86

 3.03 PlyA -  81159  81154    6                              -0.45
 3.02 Term -  81636  81511  126  0  0  110   47    75 0.795   3.88
 3.01 Init -  81859  81809   51  1  0   66   90    16 0.382   1.03
 3.00 Prom -  93218  93179   40                              -2.56

 4.00 Prom +  96050  96089   40                              -2.86
 4.01 Init +  97479  97569   91  2  1   47  103    28 0.562   0.88
 4.02 Intr +  99993 100817  825  1  0   38  105  1153 0.925 103.39
 4.03 Intr + 108410 108466   57  0  0  116  106    69 0.495  10.36
 4.04 Intr + 113163 113240   78  1  0  129   76    47 0.255   7.12
 4.05 Intr + 116142 116267  126  1  0   57   57    92 0.210   3.65
 4.06 Term + 163472 163686  215  0  2   79   48   118 0.062   4.29
 4.07 PlyA + 166476 166481    6                               1.05

 5.00 Prom + 166495 166534   40                              -6.46
 5.01 Sngl + 177747 178277  531  2  0   84   40  1263 0.980 117.17
 5.02 PlyA + 178711 178716    6                               1.05

 6.00 Prom + 202409 202448   40                              -4.66
 6.01 Sngl + 205420 205998  579  0  0   72   42   453 0.952  35.28
 6.02 PlyA + 206004 206009    6                              -4.04

 7.00 Prom + 206021 206060   40                             -11.43
 7.01 Init + 206145 206276  132  2  0   92   56    99 0.978   7.25
 7.02 Intr + 206412 206466   55  2  1   86   84    63 0.912   4.25
 7.03 Term + 206649 207292  644  1  2   57   49   690 0.949  56.33
 7.04 PlyA + 207440 207445    6                               1.05

 8.05 PlyA - 207452 207447    6                               1.05
 8.04 Term - 209791 209399  393  1  0   57   48   310 0.020  18.93
 8.03 Intr - 236109 235968  142  2  1   67   93    47 0.358   3.46
 8.02 Intr - 238974 238844  131  0  2  107   56    54 0.361   3.59
 8.01 Init - 241804 241799    6  1  0  100   94     0 0.221   2.77
 8.00 Prom - 243448 243409   40                              -6.16

 9.00 Prom + 247857 247896   40                              -4.16
 9.01 Init + 259375 259432   58  0  1   77   64    71 0.656   5.07
 9.02 Intr + 260611 260755  145  2  1   97   15    99 0.279   2.84
 9.03 Term + 262703 262916  214  2  1   73   42   122 0.535   2.80
 9.04 PlyA + 263628 263633    6                               1.05

10.04 PlyA - 263731 263726    6                               1.05
10.03 Term - 274226 274188   39  2  0  136   44    13 0.553  -1.11
10.02 Intr - 274912 274852   61  0  1  108   97    33 0.772   4.94
10.01 Intr - 277779 277694   86  0  2   88   49    56 0.291   0.32

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 144243 144074  170  0  2   85  110    79 0.817   8.81
S.002 Intr - 174416 174366   51  0  0  100   95    35 0.841   4.28


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583f:66603259_66881532|GENSCAN_predicted_peptide_1|207_aa
MPSLGSQPGKPSPGGAATCTRFEARTLRFPGVVTLVEQGPWASTPRLRKGQLCPHRAPRG
LAERNRVTERAAVATGRSRLIGRPCEPAADPAWPSPGCPSQSWSPVLTAESILNCAAKHR
GMGVVELLREAYLRITEEGYCLDSQQSVFSECKIPQTPDSSQQAWDGFSPLLTSGQGHPG
VGKPVVEDIQRQCGLEFALFPAQPSRP

>gi568815583f:66603259_66881532|GENSCAN_predicted_CDS_1|624_bp
atgcccagcctcgggtcacagccagggaaacccagccccggaggcgcagcaacctgcacc
cgtttcgaggcccgcactttgcgcttcccaggggttgttaccctggtcgagcaaggtccc
tgggcgtcaactccccgtctgcggaaagggcagctttgtccccatcgcgcccctcgaggc
ctggctgagaggaaccgggtgaccgagagggccgccgtggcgacgggccgctcccgcctt
atcggccgcccctgcgagcccgcggccgaccccgcctggccctccccgggctgcccctcc
cagagctggtcccctgtgctgacagcagagagtattctcaactgtgcagcaaagcaccgg
ggcatgggggtggtggagctgctccgggaggcctatttgagaattactgaggaagggtac
tgcttggactcacagcagagtgtgttctccgaatgtaagataccccaaactcctgacagc
tctcaacaggcttgggatggcttttctcctctgctgacctctggccagggccaccctggt
gtgggcaaaccagtggtggaggacatccagagacaatgtggcctggagtttgccttgttc
cctgctcagccctccaggccctaa

>gi568815583f:66603259_66881532|GENSCAN_predicted_peptide_2|313_aa
MPHDSTADPHHRCPFSPRLPPQTSSHPSRIERYVCGLATIYPKHPPYYHHSHKYLLHAYY
VPVCGPLTFCTSLLVTVIRIVLQIPLAGLLPNGPMGGIEAWNKSGLLMGWPATLSDHTQS
CRASQPACPDGASVDLKPDNWMKAYGTQAHEIPKSSGASSTGRELAGRTPQCLLQSYPPC
SAAPPSDTQPLDTTVGTAEWLHEIWAQIHLWSPDKLQILQEEMHMLNSDFLPASLKVNPQ
DTASKPNHLVGSQGYSVGGDPRGHRPNAEGLSEAPGTHILALNRSWQPGESKAVLMEPDE
QPIPHCIRLLGLP

>gi568815583f:66603259_66881532|GENSCAN_predicted_CDS_2|942_bp
atgccacatgattccacagcagacccacatcacaggtgccccttcagtccacggctgcca
cctcagacctccagccacccctccagaatagagaggtatgtctgtggccttgctaccatc
taccccaaacacccaccctattatcaccatagccacaaatacctcctgcatgcctactat
gtgccagtttgtggccctctgacattttgcacgtctttgttggtcactgttatccggatt
gttcttcagattccactggcaggtctgctcccaaatgggcccatgggtggaattgaggcc
tggaacaagtctggcctcctgatgggctggccagcaactctttctgatcacacacagtcc
tgcagggcctcacagccagcatgcccagatggagcatcagtggacctgaagcctgacaac
tggatgaaagcctatggaacccaagcccatgaaatccccaaatcttctggggcttccagc
acagggagagagctggcagggcggactccacaatgcctgctccaatcttaccctccctgc
tcagcagccccaccctctgacacacagccactggataccactgtggggactgctgagtgg
ctgcatgaaatctgggctcagattcacctttggagtcctgataaactacagatcctccaa
gaagagatgcacatgctgaacagtgacttcttgcctgcctccttaaaggtcaacccccaa
gatacagcatccaaacccaatcacctggtgggcagccagggctatagcgtgggaggagac
cccaggggccacagacccaatgctgaaggactctcagaagcaccaggaacacacatcctt
gccctcaacagatcctggcaacctggtgaatccaaagccgtccttatggaaccagatgaa
caacctataccccactgtatccgtctgcttgggctgccataa

>gi568815583f:66603259_66881532|GENSCAN_predicted_peptide_3|58_aa
MKAQNLGLCECTTPLREIEKGFEILTESDAVSANLWSAEETGRLDLHSVEAKRACTGA

>gi568815583f:66603259_66881532|GENSCAN_predicted_CDS_3|177_bp
atgaaggctcagaacctgggtctctgtgaatgcaccacacctctcagggagattgaaaaa
ggatttgaaattctcactgaatctgatgcagttagtgcaaatctgtggtcagcagaagaa
acaggaaggcttgacctgcactcagtggaagctaagagagcttgcacaggggcttga

>gi568815583f:66603259_66881532|GENSCAN_predicted_peptide_4|463_aa
MGVRKCLSPIFLSGSNGHSQRAQREQYLVPGYRMFRSKRSGLVRRLWRSRVVPDREEGGS
GGGGGGDEDGSLGSRAEPAPRAREGGGCGRSEVRPVAPRRPRDAVGQRGAQGAGRRRRAG
GPPRPMSEPGAGAGSSLLDVAEPGGPGWLPESDCETVTCCLFSERDAAGAPRDASDPLAG
AALEPAGGGRSREARSRLLLLEQELKTVTYSLLKRLKERSLDTLLEAVESRGGVPGGCVL
VPRADLRLGGQPAPPQLLLGRLFRWPDLQHAVELKPLCGCHSFAAAADGPTVCCNPYHFS
RLCGPESPPPPYSRLSPRDEYKPLDLSDSTLSYTETEATNSLITAPGEFSGHYWTNLGDH
PEITPLAGLAFHLPEFWGSADPESLVTLSVLGCPCSCKQPSGGGNSSRRHLGIAIIEFSP
DVSLGLLSFLEEIQNYELDHGKHSMPIFTEKLTLAIKDQIEAG

>gi568815583f:66603259_66881532|GENSCAN_predicted_CDS_4|1392_bp
atgggtgtgaggaagtgtctcagtccgatctttctttcggggagcaacggccactctcag
agagcgcagcgcgaacagtacctggttccaggatatcgtatgttcaggtccaaacgctcg
gggctggtgcggcgactttggcgaagtcgtgtggtccccgaccgggaggaaggcggcagc
ggcggcggcggtggcggcgacgaggatgggagcttgggcagccgagctgagccggccccg
cgggcaagagagggcggaggctgcggccgctccgaagtccgcccggtagccccgcggcgg
ccccgggacgcagtgggacagcgaggcgcccagggcgcggggaggcgccggcgcgcaggg
ggccccccgaggcccatgtcggagccaggggccggcgctgggagctccctgctggacgtg
gcggagccgggaggcccgggctggctgcccgagagtgactgcgagacggtgacctgctgt
ctcttttcggagcgggacgccgccggcgcgccccgggacgccagcgaccccctggccggg
gcggccctggagccggcgggcggcgggcggagtcgcgaagcgcgctcgcggctgctgctg
ctggagcaggaactcaaaaccgtcacgtactcgctgctgaagcggctcaaggagcgctcg
ctggacacgctgctggaggcggtggagtcccgcggcggcgtgccgggcggctgcgtgctg
gtgccgcgcgccgacctccgcctgggcggccagcccgcgccgccgcagctgctgctcggc
cgcctctttcgctggcccgacctgcagcacgccgtggagctgaagcccctgtgcggctgc
cacagcttcgccgccgccgccgacggccctaccgtgtgctgcaacccctaccacttcagc
cggctctgcgggcccgaatctccgccacctccctactctcggctgtctcctcgcgacgag
tacaagccactggatctgtccgattccacattgtcttacactgaaacggaggctaccaac
tccctcatcactgctccgggtgaattctcaggccactactggacaaaccttggggaccac
ccagagatcacaccactcgctggcctggccttccatctcccggagttctgggggtctgcc
gatcccgagagccttgttaccctcagtgtcctgggatgtccctgtagctgcaaacagccc
tccggagggggaaacagttctagaaggcacttgggcattgccatcatcgagttcagccca
gatgtctccctgggactcttgtcttttctagaagaaatccagaattatgaactggatcat
ggaaaacatagcatgcccatcttcactgaaaagttaaccttggcaataaaagaccaaata
gaagccggctga

>gi568815583f:66603259_66881532|GENSCAN_predicted_peptide_5|176_aa
MSPDATKPSHWCSVAYWEHRTRVGRLYAVYDQAVSIFYDLPQGSGFCLGQLNLEQRSESV
RRTRSKIGFGILLSKEPDGVWAYNRGEHPIFVNSPTLDAPGGRALVVRKVPPGYSIKVFD
FERSGLQHAPEPDAADGPYDPNSVRISFAKGWGPCYSRQFITSCPCWLEILLNNPR

>gi568815583f:66603259_66881532|GENSCAN_predicted_CDS_5|531_bp
atgtctccggacgccaccaagccgagccactggtgcagcgtggcgtactgggagcaccgg
acgcgcgtgggccgcctctatgcggtgtacgaccaggccgtcagcatcttctacgaccta
cctcagggcagcggcttctgcctgggccagctcaacctggagcagcgcagcgagtcggtg
cggcgaacgcgcagcaagatcggcttcggcatcctgctcagcaaggagcccgacggcgtg
tgggcctacaaccgcggcgagcaccccatcttcgtcaactccccgacgctggacgcgccc
ggcggccgcgccctggtcgtgcgcaaggtgccccccggctactccatcaaggtgttcgac
ttcgagcgctcgggcctgcagcacgcgcccgagcccgacgccgccgacggcccctacgac
cccaacagcgtccgcatcagcttcgccaagggctgggggccctgctactcccggcagttc
atcacctcctgcccctgctggctggagatcctcctcaacaaccccagatag

>gi568815583f:66603259_66881532|GENSCAN_predicted_peptide_6|192_aa
MGPQDLPARCWHSSPHLGDYSIVKSHNDKNKKLEEGSPGYNPPEEAPVKSVGRRVLDGLK
HCYHSFSLLWMDTRTATHSLWGILSGHMLNHREHRQFVRVRADLFCLVPLLIFAVVLFME
LLLPIIVKIFPNMLLSTFETQSIKEERPKKQLWGSWNWLHFSRTPSRRKETKGRTAKAFS
MFFQKIRETGKT

>gi568815583f:66603259_66881532|GENSCAN_predicted_CDS_6|579_bp
atgggacctcaggaccttcctgcacgctgctggcactcatctccccaccttggcgactac
tccatagtcaagtcccacaacgacaagaacaagaagctggaggaaggcagccccgggtac
aacccccctgaagaggcgccagtgaagtctgtggggcggagggtcctggacgggctgaag
cactgttaccacagcttcagccttctctggatggacaccaggacagccacacactcgctc
tgggggattctcagtggccatatgctgaaccaccgggagcacaggcagtttgtccgtgtc
cgtgctgacctcttttgcctggtcccgctcctcatctttgcagtggtgcttttcatggag
ttgctgttgcccatcatagtgaaaatctttcccaacatgttgctgtccacatttgagacc
cagtccatcaaggaggagagaccgaagaagcagctatgggggagctggaactggctacat
ttctccaggacaccatcgaggagaaaagaaaccaaggggaggactgccaaagccttctcc
atgtttttccagaagatccgagagacaggaaagacctaa

>gi568815583f:66603259_66881532|GENSCAN_predicted_peptide_7|276_aa
MRLRSIKANNELIAEEGVDSLNIKELLSTCRTRGMWALGVPENHTLPETVVKGAQVKVDK
VKEALKDTAPVLEILKEEKITKEEMGVLSDACSKLKEQNKSLTKEKEELELLKEDVQDDS
DDLQEIKKEVSKTSKEKYVEKSKASKTLTKRVQQMIWWIDSLIAQLEMDQRPGKLGQAED
SGGAGEKVIGITELISTMKQIKNIPENKLISLASTLDKSKNGKVNIDKLIKVIELVDKDV
HVSTSQVAEIVAMLEKEERWRRRRRLRERLRRRLQK

>gi568815583f:66603259_66881532|GENSCAN_predicted_CDS_7|831_bp
atgaggttgaggtccataaaggccaacaatgagttgattgctgaggaaggggtggacagc
ctgaatatcaaggaattgctgtcgacatgtagaactcgagggatgtgggccctcggggtc
ccagaaaaccatactcttccagagacagtggtgaagggagcccaggtgaaagtggacaag
gttaaggaggccctgaaggacactgcccctgtgctggagatcttgaaggaggagaaaata
actaaagaagaaatgggtgtacttagcgatgcgtgttctaaactgaaggagcaaaataag
tccctaaccaaggagaaggaggagctggagctgctgaaggaggatgtccaggacgatagt
gatgacttgcaagagatcaagaaggaagtttcaaagaccagcaaagaaaaatatgtggaa
aaatctaaagccagcaagacactgacaaagagagttcagcagatgatctggtggatagac
agcttgatcgcacagctggagatggatcagaggcctggcaagctgggccaggcagaggac
tcagggggagcgggagagaaagtcatcggtatcactgagctcatcagtaccatgaagcaa
atcaagaacattccagaaaacaagctgatcagcttggcctcaacactggataaaagtaag
aatggcaaggtcaacattgacaagctcattaaggtgattgagcttgtggacaaagatgtt
cacgtctctaccagtcaggtggctgagattgtagcaatgctggagaaggaggagaggtgg
aggagaagaagaaggctaagggaaaggctgaggaggaggctgcagaagtga

>gi568815583f:66603259_66881532|GENSCAN_predicted_peptide_8|223_aa
MQAFAVHLLCTKFDARRWEFSSEQKRRKDLVKKIKRQRGSQAVTTRSSFVSASAAVFVSK
ATSIYESISTSIEPPLTQYPKHQFKNRSFSAEKDRSSLPAMEQSRMENDFDELTEVGFRK
SVITNFSKLKEDVRTHRKEAKNLEKRLDKRLTRKNSVKKTLNDLMELKTMAQELHDSCTS
FSSQLDQVEERVSVIEDQINEMKREEKFREKKVKRNEQSLQEI

>gi568815583f:66603259_66881532|GENSCAN_predicted_CDS_8|672_bp
atgcaggcgtttgctgtgcacctcttgtgcaccaaattcgatgctaggcgctgggaattc
agcagtgagcaaaagagaaggaaggacctggtgaaaaagataaaaagacagagaggcagt
caggcggtgaccacacgatcctcatttgtctctgcatctgcagctgtatttgtatccaag
gccacatccatatatgaatctatatctacatccatagagccaccacttacccagtatcca
aaacatcagtttaagaatagaagctttagtgccgaaaaggatcgcagctccttgccagca
atggaacaaagcaggatggagaatgactttgacgagttgacagaagtaggcttcagaaag
tcggtaataacaaacttctccaagctgaaggaggatgttcgaacccatcgcaaggaagct
aaaaaccttgaaaaaagattagacaaacggctaactagaaaaaacagtgtaaagaagacc
ttaaatgacctgatggagctgaaaaccatggcacaagaactacatgactcatgcacaagc
ttcagtagccaactcgatcaagtggaagaaagggtatcagtgattgaagatcaaataaat
gaaatgaagagagaagagaagtttagagaaaaaaaagtaaaaagaaacgaacaaagcctc
caagaaatatag

>gi568815583f:66603259_66881532|GENSCAN_predicted_peptide_9|138_aa
MDFNRKELASTGGNADIVAVGAAVMQGGLAVEEEDMSLGPDSYWIPTPPAPSSADKLVPS
TKAPAAELMAGAVLNAWEDGPNVPPQGIASHISTARDGSCCANTLCRLVGTLAEMSGHLD
FNPVFAIHSLCGPPPQTK

>gi568815583f:66603259_66881532|GENSCAN_predicted_CDS_9|417_bp
atggattttaatcgaaaagagttagcctctactggtggaaatgcggacattgtggcagta
ggggctgctgtcatgcaaggaggtctggcagtggaggaagaagacatgagccttgggcca
gactcttactggattcccaccccacctgccccgtcttcagcagacaagctggtacccagc
acaaaggctccagctgctgagctaatggcaggtgctgtgctgaatgcctgggaagatggc
cccaatgttcctccccaagggattgccagtcacatcagcacagcacgggatggatcctgc
tgtgccaacactctctgcaggcttgtggggaccctggctgagatgtctggacacctggat
ttcaatccggtctttgccatccactccctgtgtggccctcccccgcaaactaaataa

>gi568815583f:66603259_66881532|GENSCAN_predicted_peptide_10|61_aa
SPQRQYSEQEKGPPSQAQWEKQRSHHQGRWMFQRDLSLGLLPGICWKEKDFKVEVFAEPL
K

>gi568815583f:66603259_66881532|GENSCAN_predicted_CDS_10|186_bp
tctccacagagacaatacagtgaacaagagaagggcccacccagccaggcccagtgggag
aagcagcggtcccaccaccagggcagatggatgttccagcgcgacctcagcctggggtta
cttcctggaatctgctggaaggaaaaggattttaaagtggaagtttttgctgagccccta
aaatga